A citation-based method for searching scientific literature

R M Andrews, I Kubacka, P F Chinnery, R N Lightowlers, D M Turnbull, N Howell. Nat Genet 1999
Times Cited: 2117







List of co-cited articles
690 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing.
Hansi Weissensteiner, Dominic Pacher, Anita Kloss-Brandstätter, Lukas Forer, Günther Specht, Hans-Jürgen Bandelt, Florian Kronenberg, Antonio Salas, Sebastian Schönherr. Nucleic Acids Res 2016
278
31


The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
22


Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
19

Massive migration from the steppe was a source for Indo-European languages in Europe.
Wolfgang Haak, Iosif Lazaridis, Nick Patterson, Nadin Rohland, Swapan Mallick, Bastien Llamas, Guido Brandt, Susanne Nordenfelt, Eadaoin Harney, Kristin Stewardson,[...]. Nature 2015
507
13

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments.
Jesse Dabney, Michael Knapp, Isabelle Glocke, Marie-Theres Gansauge, Antje Weihmann, Birgit Nickel, Cristina Valdiosera, Nuria García, Svante Pääbo, Juan-Luis Arsuaga,[...]. Proc Natl Acad Sci U S A 2013
454
12

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
12

A revised timescale for human evolution based on ancient mitochondrial genomes.
Qiaomei Fu, Alissa Mittnik, Philip L F Johnson, Kirsten Bos, Martina Lari, Ruth Bollongino, Chengkai Sun, Liane Giemsch, Ralf Schmitz, Joachim Burger,[...]. Curr Biol 2013
251
12


Fast model-based estimation of ancestry in unrelated individuals.
David H Alexander, John Novembre, Kenneth Lange. Genome Res 2009
11

EMPOP--a forensic mtDNA database.
Walther Parson, Arne Dür. Forensic Sci Int Genet 2007
196
11

DNA Commission of the International Society for Forensic Genetics: revised and extended guidelines for mitochondrial DNA typing.
W Parson, L Gusmão, D R Hares, J A Irwin, W R Mayr, N Morling, E Pokorak, M Prinz, A Salas, P M Schneider,[...]. Forensic Sci Int Genet 2014
132
11

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters.
Hákon Jónsson, Aurélien Ginolhac, Mikkel Schubert, Philip L F Johnson, Ludovic Orlando. Bioinformatics 2013
458
10


Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform.
Martin Kircher, Susanna Sawyer, Matthias Meyer. Nucleic Acids Res 2012
511
9

Ancient admixture in human history.
Nick Patterson, Priya Moorjani, Yontao Luo, Swapan Mallick, Nadin Rohland, Yiping Zhan, Teri Genschoreck, Teresa Webster, David Reich. Genetics 2012
824
9

Population structure and eigenanalysis.
Nick Patterson, Alkes L Price, David Reich. PLoS Genet 2006
9

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
9

Genome-wide patterns of selection in 230 ancient Eurasians.
Iain Mathieson, Iosif Lazaridis, Nadin Rohland, Swapan Mallick, Nick Patterson, Songül Alpaslan Roodenberg, Eadaoin Harney, Kristin Stewardson, Daniel Fernandes, Mario Novak,[...]. Nature 2015
450
9

Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA.
Gabriel Renaud, Viviane Slon, Ana T Duggan, Janet Kelso. Genome Biol 2015
125
9

Population genomics of Bronze Age Eurasia.
Morten E Allentoft, Martin Sikora, Karl-Göran Sjögren, Simon Rasmussen, Morten Rasmussen, Jesper Stenderup, Peter B Damgaard, Hannes Schroeder, Torbjörn Ahlström, Lasse Vinner,[...]. Nature 2015
430
8

Parallel palaeogenomic transects reveal complex genetic history of early European farmers.
Mark Lipson, Anna Szécsényi-Nagy, Swapan Mallick, Annamária Pósa, Balázs Stégmár, Victoria Keerl, Nadin Rohland, Kristin Stewardson, Matthew Ferry, Megan Michel,[...]. Nature 2017
100
8

Ancient human genomes suggest three ancestral populations for present-day Europeans.
Iosif Lazaridis, Nick Patterson, Alissa Mittnik, Gabriel Renaud, Swapan Mallick, Karola Kirsanow, Peter H Sudmant, Joshua G Schraiber, Sergi Castellano, Mark Lipson,[...]. Nature 2014
519
8

PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
8

The genomic landscape of polymorphic human nuclear mitochondrial insertions.
Gargi Dayama, Sarah B Emery, Jeffrey M Kidd, Ryan E Mills. Nucleic Acids Res 2014
80
10

Patterns of damage in genomic DNA sequences from a Neandertal.
Adrian W Briggs, Udo Stenzel, Philip L F Johnson, Richard E Green, Janet Kelso, Kay Prüfer, Matthias Meyer, Johannes Krause, Michael T Ronan, Michael Lachmann,[...]. Proc Natl Acad Sci U S A 2007
427
8

mtDNA Variation and Analysis Using Mitomap and Mitomaster.
Marie T Lott, Jeremy N Leipzig, Olga Derbeneva, H Michael Xie, Dimitra Chalkia, Mahdi Sarmady, Vincent Procaccio, Douglas C Wallace. Curr Protoc Bioinformatics 2013
223
8

Validation of NGS for mitochondrial DNA casework at the FBI Laboratory.
Michael D Brandhagen, Rebecca S Just, Jodi A Irwin. Forensic Sci Int Genet 2020
19
42

High-quality and high-throughput massively parallel sequencing of the human mitochondrial genome using the Illumina MiSeq.
Jonathan L King, Bobby L LaRue, Nicole M Novroski, Monika Stoljarova, Seung Bum Seo, Xiangpei Zeng, David H Warshauer, Carey P Davis, Walther Parson, Antti Sajantila,[...]. Forensic Sci Int Genet 2014
106
8

137 ancient human genomes from across the Eurasian steppes.
Peter de Barros Damgaard, Nina Marchi, Simon Rasmussen, Michaël Peyrot, Gabriel Renaud, Thorfinn Korneliussen, J Víctor Moreno-Mayar, Mikkel Winther Pedersen, Amy Goldberg, Emma Usmanova,[...]. Nature 2018
99
7

DNA analysis of an early modern human from Tianyuan Cave, China.
Qiaomei Fu, Matthias Meyer, Xing Gao, Udo Stenzel, Hernán A Burbano, Janet Kelso, Svante Pääbo. Proc Natl Acad Sci U S A 2013
213
7

Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes.
Mingkun Li, Anna Schönberg, Michael Schaefer, Roland Schroeder, Ivane Nasidze, Mark Stoneking. Am J Hum Genet 2010
196
7

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.
Swapan Mallick, Heng Li, Mark Lipson, Iain Mathieson, Melissa Gymrek, Fernando Racimo, Mengyao Zhao, Niru Chennagiri, Susanne Nordenfelt, Arti Tandon,[...]. Nature 2016
464
7

The genomic history of southeastern Europe.
Iain Mathieson, Songül Alpaslan-Roodenberg, Cosimo Posth, Anna Szécsényi-Nagy, Nadin Rohland, Swapan Mallick, Iñigo Olalde, Nasreen Broomandkhoshbacht, Francesca Candilio, Olivia Cheronet,[...]. Nature 2018
141
7

ANGSD: Analysis of Next Generation Sequencing Data.
Thorfinn Sand Korneliussen, Anders Albrechtsen, Rasmus Nielsen. BMC Bioinformatics 2014
708
7

Genomic insights into the origin of farming in the ancient Near East.
Iosif Lazaridis, Dani Nadel, Gary Rollefson, Deborah C Merrett, Nadin Rohland, Swapan Mallick, Daniel Fernandes, Mario Novak, Beatriz Gamarra, Kendra Sirak,[...]. Nature 2016
280
7

mtDNA-Server: next-generation sequencing data analysis of human mitochondrial DNA in the cloud.
Hansi Weissensteiner, Lukas Forer, Christian Fuchsberger, Bernd Schöpf, Anita Kloss-Brandstätter, Günther Specht, Florian Kronenberg, Sebastian Schönherr. Nucleic Acids Res 2016
67
10

Next generation database search algorithm for forensic mitogenome analyses.
Nicole Huber, Walther Parson, Arne Dür. Forensic Sci Int Genet 2018
35
20

The formation of human populations in South and Central Asia.
Vagheesh M Narasimhan, Nick Patterson, Priya Moorjani, Nadin Rohland, Rebecca Bernardos, Swapan Mallick, Iosif Lazaridis, Nathan Nakatsuka, Iñigo Olalde, Mark Lipson,[...]. Science 2019
70
10

A high-coverage genome sequence from an archaic Denisovan individual.
Matthias Meyer, Martin Kircher, Marie-Theres Gansauge, Heng Li, Fernando Racimo, Swapan Mallick, Joshua G Schraiber, Flora Jay, Kay Prüfer, Cesare de Filippo,[...]. Science 2012
821
7

leeHom: adaptor trimming and merging for Illumina sequencing reads.
Gabriel Renaud, Udo Stenzel, Janet Kelso. Nucleic Acids Res 2014
101
7

A "Copernican" reassessment of the human mitochondrial DNA tree from its root.
Doron M Behar, Mannis van Oven, Saharon Rosset, Mait Metspalu, Eva-Liis Loogväli, Nuno M Silva, Toomas Kivisild, Antonio Torroni, Richard Villems. Am J Hum Genet 2012
258
6


Mitochondrial DNA heteroplasmy in the emerging field of massively parallel sequencing.
Rebecca S Just, Jodi A Irwin, Walther Parson. Forensic Sci Int Genet 2015
67
8

Genome flux and stasis in a five millennium transect of European prehistory.
Cristina Gamba, Eppie R Jones, Matthew D Teasdale, Russell L McLaughlin, Gloria Gonzalez-Fortes, Valeria Mattiangeli, László Domboróczki, Ivett Kővári, Ildikó Pap, Alexandra Anders,[...]. Nat Commun 2014
265
6

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.
Pablo Cingolani, Adrian Platts, Le Lily Wang, Melissa Coon, Tung Nguyen, Luan Wang, Susan J Land, Xiangyi Lu, Douglas M Ruden. Fly (Austin) 2012
6

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans.
Maanasa Raghavan, Pontus Skoglund, Kelly E Graf, Mait Metspalu, Anders Albrechtsen, Ida Moltke, Simon Rasmussen, Thomas W Stafford, Ludovic Orlando, Ene Metspalu,[...]. Nature 2014
328
6

The Beaker phenomenon and the genomic transformation of northwest Europe.
Iñigo Olalde, Selina Brace, Morten E Allentoft, Ian Armit, Kristian Kristiansen, Thomas Booth, Nadin Rohland, Swapan Mallick, Anna Szécsényi-Nagy, Alissa Mittnik,[...]. Nature 2018
127
6

Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA.
Susanna Sawyer, Johannes Krause, Katerina Guschanski, Vincent Savolainen, Svante Pääbo. PLoS One 2012
233
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.