A citation-based method for searching scientific literature

D D Lee, H S Seung. Nature 1999
Times Cited: 1961







List of co-cited articles
236 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Metagenes and molecular pattern discovery using matrix factorization.
Jean-Philippe Brunet, Pablo Tamayo, Todd R Golub, Jill P Mesirov. Proc Natl Acad Sci U S A 2004
802
16

Graph Regularized Nonnegative Matrix Factorization for Data Representation.
Deng Cai, Xiaofei He, Jiawei Han, Thomas S Huang. IEEE Trans Pattern Anal Mach Intell 2011
282
9

Signatures of mutational processes in human cancer.
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Samuel A J R Aparicio, Sam Behjati, Andrew V Biankin, Graham R Bignell, Niccolò Bolli, Ake Borg, Anne-Lise Børresen-Dale,[...]. Nature 2013
6

Merging of healthy motor modules predicts reduced locomotor performance and muscle coordination complexity post-stroke.
David J Clark, Lena H Ting, Felix E Zajac, Richard R Neptune, Steven A Kautz. J Neurophysiol 2010
448
6

A flexible R package for nonnegative matrix factorization.
Renaud Gaujoux, Cathal Seoighe. BMC Bioinformatics 2010
598
6



Long-term training modifies the modular structure and organization of walking balance control.
Andrew Sawers, Jessica L Allen, Lena H Ting. J Neurophysiol 2015
69
7

Muscle synergies and complexity of neuromuscular control during gait in cerebral palsy.
Katherine M Steele, Adam Rozumalski, Michael H Schwartz. Dev Med Child Neurol 2015
141
5

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.
Amit Zeisel, Ana B Muñoz-Manchado, Simone Codeluppi, Peter Lönnerberg, Gioele La Manno, Anna Juréus, Sueli Marques, Hermany Munguba, Liqun He, Christer Betsholtz,[...]. Science 2015
5

Similarity network fusion for aggregating data types on a genomic scale.
Bo Wang, Aziz M Mezlini, Feyyaz Demir, Marc Fiume, Zhuowen Tu, Michael Brudno, Benjamin Haibe-Kains, Anna Goldenberg. Nat Methods 2014
672
5

Deep learning.
Yann LeCun, Yoshua Bengio, Geoffrey Hinton. Nature 2015
5

Discovery of multi-dimensional modules by integrative analysis of cancer genomic data.
Shihua Zhang, Chun-Chi Liu, Wenyuan Li, Hui Shen, Peter W Laird, Xianghong Jasmine Zhou. Nucleic Acids Res 2012
177
4


The repertoire of mutational signatures in human cancer.
Ludmil B Alexandrov, Jaegil Kim, Nicholas J Haradhvala, Mi Ni Huang, Alvin Wei Tian Ng, Yang Wu, Arnoud Boot, Kyle R Covington, Dmitry A Gordenin, Erik N Bergstrom,[...]. Nature 2020
942
4

Semi-Supervised Non-Negative Matrix Factorization With Dissimilarity and Similarity Regularization.
Yuheng Jia, Sam Kwong, Junhui Hou, Wenhui Wu. IEEE Trans Neural Netw Learn Syst 2020
12
33

Central and sensory contributions to the activation and organization of muscle synergies during natural motor behaviors.
Vincent C K Cheung, Andrea d'Avella, Matthew C Tresch, Emilio Bizzi. J Neurosci 2005
268
4

Motor patterns in human walking and running.
G Cappellini, Y P Ivanenko, R E Poppele, F Lacquaniti. J Neurophysiol 2006
417
4

SC3: consensus clustering of single-cell RNA-seq data.
Vladimir Yu Kiselev, Kristina Kirschner, Michael T Schaub, Tallulah Andrews, Andrew Yiu, Tamir Chandra, Kedar N Natarajan, Wolf Reik, Mauricio Barahona, Anthony R Green,[...]. Nat Methods 2017
595
4

Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning.
Bo Wang, Junjie Zhu, Emma Pierson, Daniele Ramazzotti, Serafim Batzoglou. Nat Methods 2017
262
4



Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
M Ashburner, C A Ball, J A Blake, D Botstein, H Butler, J M Cherry, A P Davis, K Dolinski, S S Dwight, J T Eppig,[...]. Nat Genet 2000
3

Modularity and community structure in networks.
M E J Newman. Proc Natl Acad Sci U S A 2006
3


The construction of movement by the spinal cord.
M C Tresch, P Saltiel, E Bizzi. Nat Neurosci 1999
366
3

netNMF-sc: leveraging gene-gene interactions for imputation and dimensionality reduction in single-cell expression analysis.
Rebecca Elyanow, Bianca Dumitrascu, Barbara E Engelhardt, Benjamin J Raphael. Genome Res 2020
27
11

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
3

Hierarchical clustering schemes.
S C Johnson. Psychometrika 1967
714
3

A global geometric framework for nonlinear dimensionality reduction.
J B Tenenbaum, V de Silva, J C Langford. Science 2000
3

Mutational processes molding the genomes of 21 breast cancers.
Serena Nik-Zainal, Ludmil B Alexandrov, David C Wedge, Peter Van Loo, Christopher D Greenman, Keiran Raine, David Jones, Jonathan Hinton, John Marshall, Lucy A Stebbings,[...]. Cell 2012
3

Clock-like mutational processes in human somatic cells.
Ludmil B Alexandrov, Philip H Jones, David C Wedge, Julian E Sale, Peter J Campbell, Serena Nik-Zainal, Michael R Stratton. Nat Genet 2015
509
3

Deciphering signatures of mutational processes operative in human cancer.
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Peter J Campbell, Michael R Stratton. Cell Rep 2013
693
3

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets.
Yingyao Zhou, Bin Zhou, Lars Pache, Max Chang, Alireza Hadj Khodabakhshi, Olga Tanaseichuk, Christopher Benner, Sumit K Chanda. Nat Commun 2019
3

NEMO: cancer subtyping by integration of partial multi-omic data.
Nimrod Rappoport, Ron Shamir. Bioinformatics 2019
54
5





Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity.
Joshua D Welch, Velina Kozareva, Ashley Ferreira, Charles Vanderburg, Carly Martin, Evan Z Macosko. Cell 2019
335
3

A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure.
Maayan Baron, Adrian Veres, Samuel L Wolock, Aubrey L Faust, Renaud Gaujoux, Amedeo Vetere, Jennifer Hyoje Ryu, Bridget K Wagner, Shai S Shen-Orr, Allon M Klein,[...]. Cell Syst 2016
518
3


Machine learning: Trends, perspectives, and prospects.
M I Jordan, T M Mitchell. Science 2015
784
3

SPOTlight: seeded NMF regression to deconvolute spatial transcriptomics spots with single-cell transcriptomes.
Marc Elosua-Bayes, Paula Nieto, Elisabetta Mereu, Ivo Gut, Holger Heyn. Nucleic Acids Res 2021
85
3

Locomotor primitives in newborn babies and their development.
Nadia Dominici, Yuri P Ivanenko, Germana Cappellini, Andrea d'Avella, Vito Mondì, Marika Cicchese, Adele Fabiano, Tiziana Silei, Ambrogio Di Paolo, Carlo Giannini,[...]. Science 2011
349
3

The case for and against muscle synergies.
Matthew C Tresch, Anthony Jarc. Curr Opin Neurobiol 2009
281
3

Challenges and new approaches to proving the existence of muscle synergies of neural origin.
Jason J Kutch, Francisco J Valero-Cuevas. PLoS Comput Biol 2012
142
3

Motor modules of human locomotion: influence of EMG averaging, concatenation, and number of step cycles.
Anderson S Oliveira, Leonardo Gizzi, Dario Farina, Uwe G Kersting. Front Hum Neurosci 2014
114
3

The organization of the human cerebral cortex estimated by intrinsic functional connectivity.
B T Thomas Yeo, Fenna M Krienen, Jorge Sepulcre, Mert R Sabuncu, Danial Lashkari, Marisa Hollinshead, Joshua L Roffman, Jordan W Smoller, Lilla Zöllei, Jonathan R Polimeni,[...]. J Neurophysiol 2011
3

Extensions of sparse canonical correlation analysis with applications to genomic data.
Daniela M Witten, Robert J Tibshirani. Stat Appl Genet Mol Biol 2009
214
3


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.