A citation-based method for searching scientific literature

M E Massari, C Murre. Mol Cell Biol 2000
Times Cited: 1286







List of co-cited articles
613 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The Arabidopsis basic/helix-loop-helix transcription factor family.
Gabriela Toledo-Ortiz, Enamul Huq, Peter H Quail. Plant Cell 2003
773
26



Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae.
Lorenzo Carretero-Paulet, Anahit Galstyan, Irma Roig-Villanova, Jaime F Martínez-García, Jose R Bilbao-Castro, David L Robertson. Plant Physiol 2010
306
17

Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis.
Xiaoxing Li, Xuepeng Duan, Haixiong Jiang, Yujin Sun, Yuanping Tang, Zheng Yuan, Jingkang Guo, Wanqi Liang, Liang Chen, Jingyuan Yin,[...]. Plant Physiol 2006
341
16


Evolutionary and comparative analysis of MYB and bHLH plant transcription factors.
Antje Feller, Katja Machemer, Edward L Braun, Erich Grotewold. Plant J 2011
603
15



The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
Marc A Heim, Marc Jakoby, Martin Werber, Cathie Martin, Bernd Weisshaar, Paul C Bailey. Mol Biol Evol 2003
588
12



Interactions between heterologous helix-loop-helix proteins generate complexes that bind specifically to a common DNA sequence.
C Murre, P S McCaw, H Vaessin, M Caudy, L Y Jan, Y N Jan, C V Cabrera, J N Buskin, S D Hauschka, A B Lassar. Cell 1989
11

The protein Id: a negative regulator of helix-loop-helix DNA binding proteins.
R Benezra, R L Davis, D Lockshon, D L Turner, H Weintraub. Cell 1990
10



TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data.
Chengjie Chen, Hao Chen, Yi Zhang, Hannah R Thomas, Margaret H Frank, Yehua He, Rui Xia. Mol Plant 2020
9



MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
Sudhir Kumar, Glen Stecher, Koichiro Tamura. Mol Biol Evol 2016
8

MEME SUITE: tools for motif discovery and searching.
Timothy L Bailey, Mikael Boden, Fabian A Buske, Martin Frith, Charles E Grant, Luca Clementi, Jingyuan Ren, Wilfred W Li, William S Noble. Nucleic Acids Res 2009
8

Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition.
T Shimizu, A Toumoto, K Ihara, M Shimizu, Y Kyogoku, N Ogawa, Y Oshima, T Hakoshima. EMBO J 1997
145
8

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity.
Yupeng Wang, Haibao Tang, Jeremy D Debarry, Xu Tan, Jingping Li, Xiyin Wang, Tae-ho Lee, Huizhe Jin, Barry Marler, Hui Guo,[...]. Nucleic Acids Res 2012
8

The Psychiatric Risk Gene Transcription Factor 4 (TCF4) Regulates Neurodevelopmental Pathways Associated With Schizophrenia, Autism, and Intellectual Disability.
Marc P Forrest, Matthew J Hill, David H Kavanagh, Katherine E Tansey, Adrian J Waite, Derek J Blake. Schizophr Bull 2018
50
14


The bHLH genes GLABRA3 (GL3) and ENHANCER OF GLABRA3 (EGL3) specify epidermal cell fate in the Arabidopsis root.
Christine Bernhardt, Myeong Min Lee, Antonio Gonzalez, Fan Zhang, Alan Lloyd, John Schiefelbein. Development 2003
276
7

Structure and function of helix-loop-helix proteins.
C Murre, G Bain, M A van Dijk, I Engel, B A Furnari, M E Massari, J R Matthews, M W Quong, R R Rivera, M H Stuiver. Biochim Biophys Acta 1994
394
7

Genome-wide analysis of the bHLH transcription factor family in Chinese cabbage (Brassica rapa ssp. pekinensis).
Xiao-Ming Song, Zhi-Nan Huang, Wei-Ke Duan, Jun Ren, Tong-Kun Liu, Ying Li, Xi-Lin Hou. Mol Genet Genomics 2014
61
11



Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
Paul C Bailey, Cathie Martin, Gabriela Toledo-Ortiz, Peter H Quail, Enamul Huq, Marc A Heim, Marc Jakoby, Martin Werber, Bernd Weisshaar. Plant Cell 2003
184
6


Tcf4 Regulates Synaptic Plasticity, DNA Methylation, and Memory Function.
Andrew J Kennedy, Elizabeth J Rahn, Brynna S Paulukaitis, Katherine E Savell, Holly B Kordasiewicz, Jing Wang, John W Lewis, Jessica Posey, Sarah K Strange, Mikael C Guzman-Karlsson,[...]. Cell Rep 2016
81
7

Analysis of the expression pattern of the schizophrenia-risk and intellectual disability gene TCF4 in the developing and adult brain suggests a role in development and plasticity of cortical and hippocampal neurons.
Matthias Jung, Benjamin M Häberle, Tristan Tschaikowsky, Marie-Theres Wittmann, Elli-Anna Balta, Vivien-Charlott Stadler, Christiane Zweier, Arnd Dörfler, Christian Johannes Gloeckner, D Chichung Lie. Mol Autism 2018
35
17


ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis.
Viswanathan Chinnusamy, Masaru Ohta, Siddhartha Kanrar, Byeong-Ha Lee, Xuhui Hong, Manu Agarwal, Jian-Kang Zhu. Genes Dev 2003
872
6

Interaction of shade avoidance and auxin responses: a role for two novel atypical bHLH proteins.
Irma Roig-Villanova, Jordi Bou-Torrent, Anahit Galstyan, Lorenzo Carretero-Paulet, Sergi Portolés, Manuel Rodríguez-Concepción, Jaime F Martínez-García. EMBO J 2007
150
6


Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth.
Danielle M Friedrichsen, Jennifer Nemhauser, Takamichi Muramitsu, Julin N Maloof, José Alonso, Joseph R Ecker, Masaki Furuya, Joanne Chory. Genetics 2002
182
6

The HECATE genes regulate female reproductive tract development in Arabidopsis thaliana.
Kristina Gremski, Gary Ditta, Martin F Yanofsky. Development 2007
174
6

Genome-Wide Characterization of bHLH Genes in Grape and Analysis of their Potential Relevance to Abiotic Stress Tolerance and Secondary Metabolite Biosynthesis.
Pengfei Wang, Ling Su, Huanhuan Gao, Xilong Jiang, Xinying Wu, Yi Li, Qianqian Zhang, Yongmei Wang, Fengshan Ren. Front Plant Sci 2018
46
13

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.
Magali Lescot, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, Stephane Rombauts. Nucleic Acids Res 2002
6


Mutations in TCF4, encoding a class I basic helix-loop-helix transcription factor, are responsible for Pitt-Hopkins syndrome, a severe epileptic encephalopathy associated with autonomic dysfunction.
Jeanne Amiel, Marlene Rio, Loic de Pontual, Richard Redon, Valerie Malan, Nathalie Boddaert, Perrine Plouin, Nigel P Carter, Stanislas Lyonnet, Arnold Munnich,[...]. Am J Hum Genet 2007
212
5

Arabidopsis AtbHLH112 regulates the expression of genes involved in abiotic stress tolerance by binding to their E-box and GCG-box motifs.
Yujia Liu, Xiaoyu Ji, Xianguang Nie, Min Qu, Lei Zheng, Zilong Tan, Huimin Zhao, Lin Huo, Shengnan Liu, Bing Zhang,[...]. New Phytol 2015
94
5

The Intellectual Disability and Schizophrenia Associated Transcription Factor TCF4 Is Regulated by Neuronal Activity and Protein Kinase A.
Mari Sepp, Hanna Vihma, Kaja Nurm, Mari Urb, Stephanie Cerceo Page, Kaisa Roots, Anu Hark, Brady J Maher, Priit Pruunsild, Tõnis Timmusk. J Neurosci 2017
28
17

Mutational, functional, and expression studies of the TCF4 gene in Pitt-Hopkins syndrome.
Loïc de Pontual, Yves Mathieu, Christelle Golzio, Marlène Rio, Valérie Malan, Nathalie Boddaert, Christine Soufflet, Capucine Picard, Anne Durandy, Angus Dobbie,[...]. Hum Mutat 2009
115
5

Haploinsufficiency of TCF4 causes syndromal mental retardation with intermittent hyperventilation (Pitt-Hopkins syndrome).
Christiane Zweier, Maarit M Peippo, Juliane Hoyer, Sergio Sousa, Armand Bottani, Jill Clayton-Smith, William Reardon, Jorge Saraiva, Alexandra Cabral, Ina Gohring,[...]. Am J Hum Genet 2007
220
5

Common Pathophysiology in Multiple Mouse Models of Pitt-Hopkins Syndrome.
Courtney Thaxton, Alexander D Kloth, Ellen P Clark, Sheryl S Moy, Raymond A Chitwood, Benjamin D Philpot. J Neurosci 2018
29
17

E-proteins orchestrate the progression of neural stem cell differentiation in the postnatal forebrain.
Bruno Fischer, Kasum Azim, Anahí Hurtado-Chong, Sandra Ramelli, María Fernández, Olivier Raineteau. Neural Dev 2014
30
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.