A citation-based method for searching scientific literature

M S Ko, J R Kitchen, X Wang, T A Threat, X Wang, A Hasegawa, T Sun, M J Grahovac, G J Kargul, M K Lim, Y Cui, Y Sano, T Tanaka, Y Liang, S Mason, P D Paonessa, A D Sauls, G E DePalma, R Sharara, L B Rowe, J Eppig, C Morrell, H Doi. Development 2000
Times Cited: 186







List of co-cited articles
761 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Dynamics of global gene expression changes during mouse preimplantation development.
Toshio Hamatani, Mark G Carter, Alexei A Sharov, Minoru S H Ko. Dev Cell 2004
639
33

A genome-wide study of gene activity reveals developmental signaling pathways in the preimplantation mouse embryo.
Q Tian Wang, Karolina Piotrowska, Maria Anna Ciemerych, Ljiljana Milenkovic, Matthew P Scott, Ronald W Davis, Magdalena Zernicka-Goetz. Dev Cell 2004
394
30

Transcript profiling during preimplantation mouse development.
Fanyi Zeng, Don A Baldwin, Richard M Schultz. Dev Biol 2004
337
28


Mater, a maternal effect gene required for early embryonic development in mice.
Z B Tong, L Gold, K E Pfeifer, H Dorward, E Lee, C A Bondy, J Dean, L M Nelson. Nat Genet 2000
382
11


Transcriptome analysis of mouse stem cells and early embryos.
Alexei A Sharov, Yulan Piao, Ryo Matoba, Dawood B Dudekula, Yong Qian, Vincent VanBuren, Geppino Falco, Patrick R Martin, Carole A Stagg, Uwem C Bassey,[...]. PLoS Biol 2003
143
10


Zygote arrest 1 (Zar1) is a novel maternal-effect gene critical for the oocyte-to-embryo transition.
Xuemei Wu, Maria M Viveiros, John J Eppig, Yuchen Bai, Susan L Fitzpatrick, Martin M Matzuk. Nat Genet 2003
298
10



The unique transcriptome through day 3 of human preimplantation development.
Anthony T Dobson, Rajiv Raja, Michael J Abeyta, Theresa Taylor, Shehua Shen, Christopher Haqq, Renee A Reijo Pera. Hum Mol Genet 2004
182
9

Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos.
Anne E Peaston, Alexei V Evsikov, Joel H Graber, Wilhelmine N de Vries, Andrea E Holbrook, Davor Solter, Barbara B Knowles. Dev Cell 2004
440
9


Circadian clockwork genes are expressed in the reproductive tract and conceptus of the early pregnant mouse.
Martin H Johnson, Alice Lim, Dinukshi Fernando, Margot L Day. Reprod Biomed Online 2002
69
13

In situ-synthesized novel microarray optimized for mouse stem cell and early developmental expression profiling.
Mark G Carter, Toshio Hamatani, Alexei A Sharov, Condie E Carmack, Yong Qian, Kazuhiro Aiba, Naomi T Ko, Dawood B Dudekula, Pius M Brzoska, S Stuart Hwang,[...]. Genome Res 2003
88
9

The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells.
Kaoru Mitsui, Yoshimi Tokuzawa, Hiroaki Itoh, Kohichi Segawa, Mirei Murakami, Kazutoshi Takahashi, Masayoshi Maruyama, Mitsuyo Maeda, Shinya Yamanaka. Cell 2003
8

Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells.
Ian Chambers, Douglas Colby, Morag Robertson, Jennifer Nichols, Sonia Lee, Susan Tweedie, Austin Smith. Cell 2003
8

Global gene expression analysis identifies molecular pathways distinguishing blastocyst dormancy and activation.
Toshio Hamatani, Takiko Daikoku, Haibin Wang, Hiromichi Matsumoto, Mark G Carter, Minoru S H Ko, Sudhansu K Dey. Proc Natl Acad Sci U S A 2004
176
8

Roles of NPM2 in chromatin and nucleolar organization in oocytes and embryos.
Kathleen H Burns, Maria M Viveiros, Yongsheng Ren, Pei Wang, Francesco J DeMayo, Donald E Frail, John J Eppig, Martin M Matzuk. Science 2003
259
8

Stella is a maternal effect gene required for normal early development in mice.
Bernhard Payer, Mitinori Saitou, Sheila C Barton, Rosemary Thresher, John P C Dixon, Dirk Zahn, William H Colledge, Mark B L Carlton, Toru Nakano, M Azim Surani. Curr Biol 2003
284
8

Initial sequencing and comparative analysis of the mouse genome.
Robert H Waterston, Kerstin Lindblad-Toh, Ewan Birney, Jane Rogers, Josep F Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An,[...]. Nature 2002
8

Systems biology of the 2-cell mouse embryo.
A V Evsikov, W N de Vries, A E Peaston, E E Radford, K S Fancher, F H Chen, J A Blake, C J Bult, K E Latham, D Solter,[...]. Cytogenet Genome Res 2004
106
8

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, N Osato, R Saito, H Suzuki,[...]. Nature 2002
8

Zscan4: a novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells.
Geppino Falco, Sung-Lim Lee, Ilaria Stanghellini, Uwem C Bassey, Toshio Hamatani, Minoru S H Ko. Dev Biol 2007
177
8

Regulation of gene expression at the beginning of mammalian development.
J Y Nothias, S Majumder, K J Kaneko, M L DePamphilis. J Biol Chem 1995
226
7

Gene expression in the preimplantation embryo: in-vitro developmental changes.
Shunping Wang, Chad A Cowan, Hiram Chipperfield, R Douglas Powers. Reprod Biomed Online 2005
34
20

Transcriptional profiling of pig embryogenesis by using a 15-K member unigene set specific for pig reproductive tissues and embryos.
K M Whitworth, C Agca, J-G Kim, R V Patel, G K Springer, N J Bivens, L J Forrester, N Mathialagan, J A Green, R S Prather. Biol Reprod 2005
106
7


Potential and limitations of bovine-specific arrays for the analysis of mRNA levels in early development: preliminary analysis using a bovine embryonic array.
Marc-André Sirard, Isabelle Dufort, Maud Vallée, Lyne Massicotte, Catherine Gravel, Hélène Reghenas, Andrew J Watson, W Allan King, Claude Robert. Reprod Fertil Dev 2005
39
17

Zscan4 regulates telomere elongation and genomic stability in ES cells.
Michal Zalzman, Geppino Falco, Lioudmila V Sharova, Akira Nishiyama, Marshall Thomas, Sung-Lim Lee, Carole A Stagg, Hien G Hoang, Hsih-Te Yang, Fred E Indig,[...]. Nature 2010
276
7

Embryonic stem cell potency fluctuates with endogenous retrovirus activity.
Todd S Macfarlan, Wesley D Gifford, Shawn Driscoll, Karen Lettieri, Helen M Rowe, Dario Bonanomi, Amy Firth, Oded Singer, Didier Trono, Samuel L Pfaff. Nature 2012
614
7

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
M Ashburner, C A Ball, J A Blake, D Botstein, H Butler, J M Cherry, A P Davis, K Dolinski, S S Dwight, J T Eppig,[...]. Nat Genet 2000
6



Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries.
L Diatchenko, Y F Lau, A P Campbell, A Chenchik, F Moqadam, B Huang, S Lukyanov, K Lukyanov, N Gurskaya, E D Sverdlov,[...]. Proc Natl Acad Sci U S A 1996
6

Core transcriptional regulatory circuitry in human embryonic stem cells.
Laurie A Boyer, Tong Ihn Lee, Megan F Cole, Sarah E Johnstone, Stuart S Levine, Jacob P Zucker, Matthew G Guenther, Roshan M Kumar, Heather L Murray, Richard G Jenner,[...]. Cell 2005
6

Identification of novel and known oocyte-specific genes using complementary DNA subtraction and microarray analysis in three different species.
Maud Vallée, Catherine Gravel, Marie-France Palin, Hélène Reghenas, Paul Stothard, David S Wishart, Marc-André Sirard. Biol Reprod 2005
53
11


The transcriptional landscape of the mammalian genome.
P Carninci, T Kasukawa, S Katayama, J Gough, M C Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells,[...]. Science 2005
6

High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization.
Toshiyuki Yoshikawa, Yulan Piao, Jinhui Zhong, Ryo Matoba, Mark G Carter, Yuxia Wang, Ilya Goldberg, Minoru S H Ko. Gene Expr Patterns 2006
68
8


Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
6

Embryonic genome activation.
K E Latham, R M Schultz. Front Biosci 2001
124
6


Bioluminescence imaging of period1 gene expression in utero.
Meera T Saxena, Sara J Aton, Charles Hildebolt, Julie L Prior, Ute Abraham, David Piwnica-Worms, Erik D Herzog. Mol Imaging 2007
23
26

Developmental expression of clock genes in the Syrian hamster.
Xiaodong Li, Fred C Davis. Brain Res Dev Brain Res 2005
33
18

Insight into molecular core clock mechanism of embryonic and early postnatal rat suprachiasmatic nucleus.
Martin Sládek, Alena Sumová, Zuzana Kováciková, Zdenka Bendová, Kristyna Laurinová, Helena Illnerová. Proc Natl Acad Sci U S A 2004
110
6

Dynamics of global transcriptome in bovine matured oocytes and preimplantation embryos.
M Misirlioglu, G P Page, H Sagirkaya, A Kaya, J J Parrish, N L First, E Memili. Proc Natl Acad Sci U S A 2006
109
6

Selective degradation of transcripts during meiotic maturation of mouse oocytes.
You-Qiang Su, Koji Sugiura, Yong Woo, Karen Wigglesworth, Sonya Kamdar, Jason Affourtit, John J Eppig. Dev Biol 2007
232
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.