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List of co-cited articles
947 articles co-cited >1



Times Cited
  Times     Co-cited
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CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus.
A T Hark, C J Schoenherr, D J Katz, R S Ingram, J M Levorse, S M Tilghman. Nature 2000
40

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
30

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
25

Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Elphège P Nora, Anton Goloborodko, Anne-Laure Valton, Johan H Gibcus, Alec Uebersohn, Nezar Abdennur, Job Dekker, Leonid A Mirny, Benoit G Bruneau. Cell 2017
626
24

Widespread plasticity in CTCF occupancy linked to DNA methylation.
Hao Wang, Matthew T Maurano, Hongzhu Qu, Katherine E Varley, Jason Gertz, Florencia Pauli, Kristen Lee, Theresa Canfield, Molly Weaver, Richard Sandstrom,[...]. Genome Res 2012
339
17

Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
17

Cohesin Loss Eliminates All Loop Domains.
Suhas S P Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M Engreitz, Elizabeth M Perez, Kyong-Rim Kieffer-Kwon, Adrian L Sanborn, Sarah E Johnstone, Gavin D Bascom, Ivan D Bochkov,[...]. Cell 2017
667
17


Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions.
Darío G Lupiáñez, Katerina Kraft, Verena Heinrich, Peter Krawitz, Francesco Brancati, Eva Klopocki, Denise Horn, Hülya Kayserili, John M Opitz, Renata Laxova,[...]. Cell 2015
942
16

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
16

CTCF: master weaver of the genome.
Jennifer E Phillips, Victor G Corces. Cell 2009
15

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes.
Adrian L Sanborn, Suhas S P Rao, Su-Chen Huang, Neva C Durand, Miriam H Huntley, Andrew I Jewett, Ivan D Bochkov, Dharmaraj Chinnappan, Ashok Cutkosky, Jian Li,[...]. Proc Natl Acad Sci U S A 2015
766
15

CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function.
Ya Guo, Quan Xu, Daniele Canzio, Jia Shou, Jinhuan Li, David U Gorkin, Inkyung Jung, Haiyang Wu, Yanan Zhai, Yuanxiao Tang,[...]. Cell 2015
491
14

Formation of Chromosomal Domains by Loop Extrusion.
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
721
14

The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension.
Judith H I Haarhuis, Robin H van der Weide, Vincent A Blomen, J Omar Yáñez-Cuna, Mario Amendola, Marjon S van Ruiten, Peter H L Krijger, Hans Teunissen, René H Medema, Bas van Steensel,[...]. Cell 2017
311
13

A genome-wide map of CTCF multivalency redefines the CTCF code.
Hirotaka Nakahashi, Kyong-Rim Kieffer Kwon, Wolfgang Resch, Laura Vian, Marei Dose, Diana Stavreva, Ofir Hakim, Nathanael Pruett, Steevenson Nelson, Arito Yamane,[...]. Cell Rep 2013
175
12

Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA.
Hideharu Hashimoto, Dongxue Wang, John R Horton, Xing Zhang, Victor G Corces, Xiaodong Cheng. Mol Cell 2017
103
12

Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells.
Jessica Zuin, Jesse R Dixon, Michael I J A van der Reijden, Zhen Ye, Petros Kolovos, Rutger W W Brouwer, Mariëtte P C van de Corput, Harmen J G van de Werken, Tobias A Knoch, Wilfred F J van IJcken,[...]. Proc Natl Acad Sci U S A 2014
471
11

Insulator dysfunction and oncogene activation in IDH mutant gliomas.
William A Flavahan, Yotam Drier, Brian B Liau, Shawn M Gillespie, Andrew S Venteicher, Anat O Stemmer-Rachamimov, Mario L Suvà, Bradley E Bernstein. Nature 2016
592
11

Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.
Gordana Wutz, Csilla Várnai, Kota Nagasaka, David A Cisneros, Roman R Stocsits, Wen Tang, Stefan Schoenfelder, Gregor Jessberger, Matthias Muhar, M Julius Hossain,[...]. EMBO J 2017
271
11

DNA loop extrusion by human cohesin.
Iain F Davidson, Benedikt Bauer, Daniela Goetz, Wen Tang, Gordana Wutz, Jan-Michael Peters. Science 2019
203
11

Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus.
Raffaella Nativio, Kerstin S Wendt, Yoko Ito, Joanna E Huddleston, Santiago Uribe-Lewis, Kathryn Woodfine, Christel Krueger, Wolf Reik, Jan-Michael Peters, Adele Murrell. PLoS Genet 2009
252
10

CTCF: an architectural protein bridging genome topology and function.
Chin-Tong Ong, Victor G Corces. Nat Rev Genet 2014
574
10

Architectural protein subclasses shape 3D organization of genomes during lineage commitment.
Jennifer E Phillips-Cremins, Michael E G Sauria, Amartya Sanyal, Tatiana I Gerasimova, Bryan R Lajoie, Joshua S K Bell, Chin-Tong Ong, Tracy A Hookway, Changying Guo, Yuhua Sun,[...]. Cell 2013
720
10

Two independent modes of chromatin organization revealed by cohesin removal.
Wibke Schwarzer, Nezar Abdennur, Anton Goloborodko, Aleksandra Pekowska, Geoffrey Fudenberg, Yann Loe-Mie, Nuno A Fonseca, Wolfgang Huber, Christian H Haering, Leonid Mirny,[...]. Nature 2017
433
10


Cohesin mediates transcriptional insulation by CCCTC-binding factor.
Kerstin S Wendt, Keisuke Yoshida, Takehiko Itoh, Masashige Bando, Birgit Koch, Erika Schirghuber, Shuichi Tsutsumi, Genta Nagae, Ko Ishihara, Tsuyoshi Mishiro,[...]. Nature 2008
809
10

CTCF, a conserved nuclear factor required for optimal transcriptional activity of the chicken c-myc gene, is an 11-Zn-finger protein differentially expressed in multiple forms.
E M Klenova, R H Nicolas, H F Paterson, A F Carne, C M Heath, G H Goodwin, P E Neiman, V V Lobanenkov. Mol Cell Biol 1993
212
9

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome.
Tae Hoon Kim, Ziedulla K Abdullaev, Andrew D Smith, Keith A Ching, Dmitri I Loukinov, Roland D Green, Michael Q Zhang, Victor V Lobanenkov, Bing Ren. Cell 2007
729
9

CTCF: making the right connections.
Rodolfo Ghirlando, Gary Felsenfeld. Genes Dev 2016
156
9


Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages.
Dominic Schmidt, Petra C Schwalie, Michael D Wilson, Benoit Ballester, Angela Gonçalves, Claudia Kutter, Gordon D Brown, Aileen Marshall, Paul Flicek, Duncan T Odom. Cell 2012
336
9

Cohesins functionally associate with CTCF on mammalian chromosome arms.
Vania Parelho, Suzana Hadjur, Mikhail Spivakov, Marion Leleu, Stephan Sauer, Heather C Gregson, Adam Jarmuz, Claudia Canzonetta, Zoe Webster, Tatyana Nesterova,[...]. Cell 2008
631
9

CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.
Zhonghui Tang, Oscar Junhong Luo, Xingwang Li, Meizhen Zheng, Jacqueline Jufen Zhu, Przemyslaw Szalaj, Pawel Trzaskoma, Adriana Magalska, Jakub Wlodarczyk, Blazej Ruszczycki,[...]. Cell 2015
482
9

Human cohesin compacts DNA by loop extrusion.
Yoori Kim, Zhubing Shi, Hongshan Zhang, Ilya J Finkelstein, Hongtao Yu. Science 2019
186
9

Functional association of CTCF with the insulator upstream of the H19 gene is parent of origin-specific and methylation-sensitive.
C Kanduri, V Pant, D Loukinov, E Pugacheva, C F Qi, A Wolffe, R Ohlsson, V V Lobanenkov. Curr Biol 2000
361
8


A map of the cis-regulatory sequences in the mouse genome.
Yin Shen, Feng Yue, David F McCleary, Zhen Ye, Lee Edsall, Samantha Kuan, Ulrich Wagner, Jesse Dixon, Leonard Lee, Victor V Lobanenkov,[...]. Nature 2012
904
8

An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes.
G N Filippova, S Fagerlie, E M Klenova, C Myers, Y Dehner, G Goodwin, P E Neiman, S J Collins, V V Lobanenkov. Mol Cell Biol 1996
403
8


Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
8

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
8


Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
8

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
8

CTCF and cohesin regulate chromatin loop stability with distinct dynamics.
Anders S Hansen, Iryna Pustova, Claudia Cattoglio, Robert Tjian, Xavier Darzacq. Elife 2017
221
8

Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture.
Matteo Vietri Rudan, Christopher Barrington, Stephen Henderson, Christina Ernst, Duncan T Odom, Amos Tanay, Suzana Hadjur. Cell Rep 2015
376
8

CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation.
Varun Narendra, Pedro P Rocha, Disi An, Ramya Raviram, Jane A Skok, Esteban O Mazzoni, Danny Reinberg. Science 2015
306
8

Three-dimensional folding and functional organization principles of the Drosophila genome.
Tom Sexton, Eitan Yaffe, Ephraim Kenigsberg, Frédéric Bantignies, Benjamin Leblanc, Michael Hoichman, Hugues Parrinello, Amos Tanay, Giacomo Cavalli. Cell 2012
8

CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation.
Matthias Merkenschlager, Elphège P Nora. Annu Rev Genomics Hum Genet 2016
234
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.