A citation-based method for searching scientific literature

S Rea, F Eisenhaber, D O'Carroll, B D Strahl, Z W Sun, M Schmid, S Opravil, K Mechtler, C P Ponting, C D Allis, T Jenuwein. Nature 2000
Times Cited: 1961







List of co-cited articles
1066 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins.
M Lachner, D O'Carroll, S Rea, K Mechtler, T Jenuwein. Nature 2001
15

Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly.
J Nakayama , J C Rice, B D Strahl, C D Allis, S I Grewal. Science 2001
15

Loss of the Suv39h histone methyltransferases impairs mammalian heterochromatin and genome stability.
A H Peters, D O'Carroll, H Scherthan, K Mechtler, S Sauer, C Schöfer, K Weipoltshammer, M Pagani, M Lachner, A Kohlmaier,[...]. Cell 2001
15

Histone demethylation mediated by the nuclear amine oxidase homolog LSD1.
Yujiang Shi, Fei Lan, Caitlin Matson, Peter Mulligan, Johnathan R Whetstine, Philip A Cole, Robert A Casero, Yang Shi. Cell 2004
14

Ten principles of heterochromatin formation and function.
Robin C Allshire, Hiten D Madhani. Nat Rev Mol Cell Biol 2018
247
14

Regulation of chromatin by histone modifications.
Andrew J Bannister, Tony Kouzarides. Cell Res 2011
13

G9a histone methyltransferase plays a dominant role in euchromatic histone H3 lysine 9 methylation and is essential for early embryogenesis.
Makoto Tachibana, Kenji Sugimoto, Masami Nozaki, Jun Ueda, Tsutomu Ohta, Misao Ohki, Mikiko Fukuda, Naoki Takeda, Hiroyuki Niida, Hiroyuki Kato,[...]. Genes Dev 2002
881
13

Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain.
A J Bannister, P Zegerman, J F Partridge, E A Miska, J O Thomas, R C Allshire, T Kouzarides. Nature 2001
13

Translating the histone code.
T Jenuwein, C D Allis. Science 2001
12

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
12


Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.
Adam G Larson, Daniel Elnatan, Madeline M Keenen, Michael J Trnka, Jonathan B Johnston, Alma L Burlingame, David A Agard, Sy Redding, Geeta J Narlikar. Nature 2017
761
11

Phase separation drives heterochromatin domain formation.
Amy R Strom, Alexander V Emelyanov, Mustafa Mir, Dmitry V Fyodorov, Xavier Darzacq, Gary H Karpen. Nature 2017
809
11

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
10

Histone demethylation by a family of JmjC domain-containing proteins.
Yu-ichi Tsukada, Jia Fang, Hediye Erdjument-Bromage, Maria E Warren, Christoph H Borchers, Paul Tempst, Yi Zhang. Nature 2006
9

The language of covalent histone modifications.
B D Strahl, C D Allis. Nature 2000
9

Histone methyltransferases G9a and GLP form heteromeric complexes and are both crucial for methylation of euchromatin at H3-K9.
Makoto Tachibana, Jun Ueda, Mikiko Fukuda, Naoki Takeda, Tsutomu Ohta, Hiroko Iwanari, Toshiko Sakihama, Tatsuhiko Kodama, Takao Hamakubo, Yoichi Shinkai. Genes Dev 2005
548
9


The Polycomb complex PRC2 and its mark in life.
Raphaël Margueron, Danny Reinberg. Nature 2011
8

deepTools2: a next generation web server for deep-sequencing data analysis.
Fidel Ramírez, Devon P Ryan, Björn Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Friederike Dündar, Thomas Manke. Nucleic Acids Res 2016
8

Role of histone H3 lysine 27 methylation in Polycomb-group silencing.
Ru Cao, Liangjun Wang, Hengbin Wang, Li Xia, Hediye Erdjument-Bromage, Paul Tempst, Richard S Jones, Yi Zhang. Science 2002
8

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
8

DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs.
Mohammad M Karimi, Preeti Goyal, Irina A Maksakova, Misha Bilenky, Danny Leung, Jie Xin Tang, Yoichi Shinkai, Dixie L Mager, Steven Jones, Martin Hirst,[...]. Cell Stem Cell 2011
294
8

Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
8

Methylation of H3-lysine 79 is mediated by a new family of HMTases without a SET domain.
Qin Feng, Hengbin Wang, Huck Hui Ng, Hediye Erdjument-Bromage, Paul Tempst, Kevin Struhl, Yi Zhang. Curr Biol 2002
573
7

High-resolution profiling of histone methylations in the human genome.
Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Dustin E Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao. Cell 2007
7

Prdm3 and Prdm16 are H3K9me1 methyltransferases required for mammalian heterochromatin integrity.
Inês Pinheiro, Raphaël Margueron, Nicholas Shukeir, Michael Eisold, Christoph Fritzsch, Florian M Richter, Gerhard Mittler, Christel Genoud, Susumu Goyama, Mineo Kurokawa,[...]. Cell 2012
201
7

Histone lysine methylation dynamics: establishment, regulation, and biological impact.
Joshua C Black, Capucine Van Rechem, Johnathan R Whetstine. Mol Cell 2012
644
7

H3K9me3-Dependent Heterochromatin: Barrier to Cell Fate Changes.
Justin S Becker, Dario Nicetto, Kenneth S Zaret. Trends Genet 2016
218
7

A subset of the histone H3 lysine 9 methyltransferases Suv39h1, G9a, GLP, and SETDB1 participate in a multimeric complex.
Lauriane Fritsch, Philippe Robin, Jacques R R Mathieu, Mouloud Souidi, Hélène Hinaux, Claire Rougeulle, Annick Harel-Bellan, Maya Ameyar-Zazoua, Slimane Ait-Si-Ali. Mol Cell 2010
222
7

Isolation and characterization of Suv39h2, a second histone H3 methyltransferase gene that displays testis-specific expression.
D O'Carroll, H Scherthan, A H Peters, S Opravil, A R Haynes, G Laible, S Rea, M Schmid, A Lebersorger, M Jerratsch,[...]. Mol Cell Biol 2000
229
7

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
7

Integrative genomics viewer.
James T Robinson, Helga Thorvaldsdóttir, Wendy Winckler, Mitchell Guttman, Eric S Lander, Gad Getz, Jill P Mesirov. Nat Biotechnol 2011
7

Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.
Brian D Strahl, Patrick A Grant, Scott D Briggs, Zu-Wen Sun, James R Bone, Jennifer A Caldwell, Sahana Mollah, Richard G Cook, Jeffrey Shabanowitz, Donald F Hunt,[...]. Mol Cell Biol 2002
409
7

Partitioning and plasticity of repressive histone methylation states in mammalian chromatin.
Antoine H F M Peters, Stefan Kubicek, Karl Mechtler, Roderick J O'Sullivan, Alwin A H A Derijck, Laura Perez-Burgos, Alexander Kohlmaier, Susanne Opravil, Makoto Tachibana, Yoichi Shinkai,[...]. Mol Cell 2003
837
7


UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development.
Karl Agger, Paul A C Cloos, Jesper Christensen, Diego Pasini, Simon Rose, Juri Rappsilber, Irina Issaeva, Eli Canaani, Anna Elisabetta Salcini, Kristian Helin. Nature 2007
914
6

Histone H3K27ac separates active from poised enhancers and predicts developmental state.
Menno P Creyghton, Albert W Cheng, G Grant Welstead, Tristan Kooistra, Bryce W Carey, Eveline J Steine, Jacob Hanna, Michael A Lodato, Garrett M Frampton, Phillip A Sharp,[...]. Proc Natl Acad Sci U S A 2010
6

A bivalent chromatin structure marks key developmental genes in embryonic stem cells.
Bradley E Bernstein, Tarjei S Mikkelsen, Xiaohui Xie, Michael Kamal, Dana J Huebert, James Cuff, Ben Fry, Alex Meissner, Marius Wernig, Kathrin Plath,[...]. Cell 2006
6

The histone H3K79 methyltransferase Dot1L is essential for mammalian development and heterochromatin structure.
Brendan Jones, Hui Su, Audesh Bhat, Hong Lei, Jeffrey Bajko, Sarah Hevi, Gretchen A Baltus, Shilpa Kadam, Huili Zhai, Reginald Valdez,[...]. PLoS Genet 2008
240
6

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription.
Michael J Carrozza, Bing Li, Laurence Florens, Tamaki Suganuma, Selene K Swanson, Kenneth K Lee, Wei-Jong Shia, Scott Anderson, John Yates, Michael P Washburn,[...]. Cell 2005
931
6


Step-wise methylation of histone H3K9 positions heterochromatin at the nuclear periphery.
Benjamin D Towbin, Cristina González-Aguilera, Ragna Sack, Dimos Gaidatzis, Véronique Kalck, Peter Meister, Peter Askjaer, Susan M Gasser. Cell 2012
365
6

The histone methyltransferase SETDB1 represses endogenous and exogenous retroviruses in B lymphocytes.
Patrick L Collins, Katherine E Kyle, Takeshi Egawa, Yoichi Shinkai, Eugene M Oltz. Proc Natl Acad Sci U S A 2015
60
10

The interplay of histone modifications - writers that read.
Tianyi Zhang, Sarah Cooper, Neil Brockdorff. EMBO Rep 2015
357
6



Role of the polycomb protein EED in the propagation of repressive histone marks.
Raphael Margueron, Neil Justin, Katsuhito Ohno, Miriam L Sharpe, Jinsook Son, William J Drury, Philipp Voigt, Stephen R Martin, William R Taylor, Valeria De Marco,[...]. Nature 2009
763
6

Heterochromatin revisited.
Shiv I S Grewal, Songtao Jia. Nat Rev Genet 2007
892
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.