A citation-based method for searching scientific literature

Y Kabeya, N Mizushima, T Ueno, A Yamamoto, T Kirisako, T Noda, E Kominami, Y Ohsumi, T Yoshimori. EMBO J 2000
Times Cited: 5129







List of co-cited articles
650 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy.
Serhiy Pankiv, Terje Høyvarde Clausen, Trond Lamark, Andreas Brech, Jack-Ansgar Bruun, Heidi Outzen, Aud Øvervatn, Geir Bjørkøy, Terje Johansen. J Biol Chem 2007
15

p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death.
Geir Bjørkøy, Trond Lamark, Andreas Brech, Heidi Outzen, Maria Perander, Aud Overvatn, Harald Stenmark, Terje Johansen. J Cell Biol 2005
14

The role of Atg proteins in autophagosome formation.
Noboru Mizushima, Tamotsu Yoshimori, Yoshinori Ohsumi. Annu Rev Cell Dev Biol 2011
13

AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1.
Joungmok Kim, Mondira Kundu, Benoit Viollet, Kun-Liang Guan. Nat Cell Biol 2011
13

A ubiquitin-like system mediates protein lipidation.
Y Ichimura, T Kirisako, T Takao, Y Satomi, Y Shimonishi, N Ishihara, N Mizushima, I Tanida, E Kominami, M Ohsumi,[...]. Nature 2000
12

A protein conjugation system essential for autophagy.
N Mizushima, T Noda, T Yoshimori, Y Tanaka, T Ishii, M D George, D J Klionsky, M Ohsumi, Y Ohsumi. Nature 1998
12


Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1.
Daniel J Klionsky, Amal Kamal Abdel-Aziz, Sara Abdelfatah, Mahmoud Abdellatif, Asghar Abdoli, Steffen Abel, Hagai Abeliovich, Marie H Abildgaard, Yakubu Princely Abudu, Abraham Acevedo-Arozena,[...]. Autophagy 2021
448
11

Autophagy in the pathogenesis of disease.
Beth Levine, Guido Kroemer. Cell 2008
10

Autophagy: renovation of cells and tissues.
Noboru Mizushima, Masaaki Komatsu. Cell 2011
10

In vivo analysis of autophagy in response to nutrient starvation using transgenic mice expressing a fluorescent autophagosome marker.
Noboru Mizushima, Akitsugu Yamamoto, Makoto Matsui, Tamotsu Yoshimori, Yoshinori Ohsumi. Mol Biol Cell 2004
10

Loss of autophagy in the central nervous system causes neurodegeneration in mice.
Masaaki Komatsu, Satoshi Waguri, Tomoki Chiba, Shigeo Murata, Jun-ichi Iwata, Isei Tanida, Takashi Ueno, Masato Koike, Yasuo Uchiyama, Eiki Kominami,[...]. Nature 2006
10

Methods in mammalian autophagy research.
Noboru Mizushima, Tamotsu Yoshimori, Beth Levine. Cell 2010
9

Mechanism and medical implications of mammalian autophagy.
Ivan Dikic, Zvulun Elazar. Nat Rev Mol Cell Biol 2018
9

Selective autophagy mediated by autophagic adapter proteins.
Terje Johansen, Trond Lamark. Autophagy 2011
8

Autophagy and the integrated stress response.
Guido Kroemer, Guillermo Mariño, Beth Levine. Mol Cell 2010
8

Suppression of basal autophagy in neural cells causes neurodegenerative disease in mice.
Taichi Hara, Kenji Nakamura, Makoto Matsui, Akitsugu Yamamoto, Yohko Nakahara, Rika Suzuki-Migishima, Minesuke Yokoyama, Kenji Mishima, Ichiro Saito, Hideyuki Okano,[...]. Nature 2006
8


Regulation mechanisms and signaling pathways of autophagy.
Congcong He, Daniel J Klionsky. Annu Rev Genet 2009
8

Promotion of tumorigenesis by heterozygous disruption of the beclin 1 autophagy gene.
Xueping Qu, Jie Yu, Govind Bhagat, Norihiko Furuya, Hanina Hibshoosh, Andrea Troxel, Jeffrey Rosen, Eeva-Liisa Eskelinen, Noboru Mizushima, Yoshinori Ohsumi,[...]. J Clin Invest 2003
7

The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy.
Michael Lazarou, Danielle A Sliter, Lesley A Kane, Shireen A Sarraf, Chunxin Wang, Jonathon L Burman, Dionisia P Sideris, Adam I Fogel, Richard J Youle. Nature 2015
7

Autophagy fights disease through cellular self-digestion.
Noboru Mizushima, Beth Levine, Ana Maria Cuervo, Daniel J Klionsky. Nature 2008
7

Homeostatic levels of p62 control cytoplasmic inclusion body formation in autophagy-deficient mice.
Masaaki Komatsu, Satoshi Waguri, Masato Koike, Yu-Shin Sou, Takashi Ueno, Taichi Hara, Noboru Mizushima, Jun-Ichi Iwata, Junji Ezaki, Shigeo Murata,[...]. Cell 2007
7

Parkin is recruited selectively to impaired mitochondria and promotes their autophagy.
Derek Narendra, Atsushi Tanaka, Der-Fen Suen, Richard J Youle. J Cell Biol 2008
7

Autophagy: process and function.
Noboru Mizushima. Genes Dev 2007
7

Autophagy in Human Diseases.
Noboru Mizushima, Beth Levine. N Engl J Med 2020
194
7

Beclin 1, an autophagy gene essential for early embryonic development, is a haploinsufficient tumor suppressor.
Zhenyu Yue, Shengkan Jin, Chingwen Yang, Arnold J Levine, Nathaniel Heintz. Proc Natl Acad Sci U S A 2003
7

Beclin 1 forms two distinct phosphatidylinositol 3-kinase complexes with mammalian Atg14 and UVRAG.
Eisuke Itakura, Chieko Kishi, Kinji Inoue, Noboru Mizushima. Mol Biol Cell 2008
797
6


Mitochondrial outer-membrane protein FUNDC1 mediates hypoxia-induced mitophagy in mammalian cells.
Lei Liu, Du Feng, Guo Chen, Ming Chen, Qiaoxia Zheng, Pingping Song, Qi Ma, Chongzhuo Zhu, Rui Wang, Wanjun Qi,[...]. Nat Cell Biol 2012
865
6

The role of autophagy during the early neonatal starvation period.
Akiko Kuma, Masahiko Hatano, Makoto Matsui, Akitsugu Yamamoto, Haruaki Nakaya, Tamotsu Yoshimori, Yoshinori Ohsumi, Takeshi Tokuhisa, Noboru Mizushima. Nature 2004
6

The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy.
Naonobu Fujita, Takashi Itoh, Hiroko Omori, Mitsunori Fukuda, Takeshi Noda, Tamotsu Yoshimori. Mol Biol Cell 2008
711
6


Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum.
Elizabeth L Axe, Simon A Walker, Maria Manifava, Priya Chandra, H Llewelyn Roderick, Anja Habermann, Gareth Griffiths, Nicholas T Ktistakis. J Cell Biol 2008
6

Autophagy pathway: Cellular and molecular mechanisms.
Li Yu, Yang Chen, Sharon A Tooze. Autophagy 2018
565
6

Self-eating and self-killing: crosstalk between autophagy and apoptosis.
M Chiara Maiuri, Einat Zalckvar, Adi Kimchi, Guido Kroemer. Nat Rev Mol Cell Biol 2007
6

Mechanisms of Selective Autophagy.
Gabriele Zaffagnini, Sascha Martens. J Mol Biol 2016
313
6

Molecular definitions of autophagy and related processes.
Lorenzo Galluzzi, Eric H Baehrecke, Andrea Ballabio, Patricia Boya, José Manuel Bravo-San Pedro, Francesco Cecconi, Augustine M Choi, Charleen T Chu, Patrice Codogno, Maria Isabel Colombo,[...]. EMBO J 2017
810
6



ULK1.ATG13.FIP200 complex mediates mTOR signaling and is essential for autophagy.
Ian G Ganley, Du H Lam, Junru Wang, Xiaojun Ding, She Chen, Xuejun Jiang. J Biol Chem 2009
937
5

ULK1 induces autophagy by phosphorylating Beclin-1 and activating VPS34 lipid kinase.
Ryan C Russell, Ye Tian, Haixin Yuan, Hyun Woo Park, Yu-Yun Chang, Joungmok Kim, Haerin Kim, Thomas P Neufeld, Andrew Dillin, Kun-Liang Guan. Nat Cell Biol 2013
930
5

Autophagy: cellular and molecular mechanisms.
Danielle Glick, Sandra Barth, Kay F Macleod. J Pathol 2010
5

A role for ubiquitin in selective autophagy.
Vladimir Kirkin, David G McEwan, Ivana Novak, Ivan Dikic. Mol Cell 2009
907
5

Monitoring and Measuring Autophagy.
Saori R Yoshii, Noboru Mizushima. Int J Mol Sci 2017
494
5

Cargo recognition and trafficking in selective autophagy.
Alexandra Stolz, Andreas Ernst, Ivan Dikic. Nat Cell Biol 2014
731
5

Local Fatty Acid Channeling into Phospholipid Synthesis Drives Phagophore Expansion during Autophagy.
Maximilian Schütter, Patrick Giavalisco, Susanne Brodesser, Martin Graef. Cell 2020
84
5

Impairment of starvation-induced and constitutive autophagy in Atg7-deficient mice.
Masaaki Komatsu, Satoshi Waguri, Takashi Ueno, Junichi Iwata, Shigeo Murata, Isei Tanida, Junji Ezaki, Noboru Mizushima, Yoshinori Ohsumi, Yasuo Uchiyama,[...]. J Cell Biol 2005
5

Autophagosomes form at ER-mitochondria contact sites.
Maho Hamasaki, Nobumichi Furuta, Atsushi Matsuda, Akiko Nezu, Akitsugu Yamamoto, Naonobu Fujita, Hiroko Oomori, Takeshi Noda, Tokuko Haraguchi, Yasushi Hiraoka,[...]. Nature 2013
5

Mechanisms governing autophagosome biogenesis.
Hitoshi Nakatogawa. Nat Rev Mol Cell Biol 2020
170
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.