A citation-based method for searching scientific literature

E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh, R Funke, D Gage, K Harris, A Heaford, J Howland, L Kann, J Lehoczky, R LeVine, P McEwan, K McKernan, J Meldrim, J P Mesirov, C Miranda, W Morris, J Naylor, C Raymond, M Rosetti, R Santos, A Sheridan, C Sougnez, Y Stange-Thomann, N Stojanovic, A Subramanian, D Wyman, J Rogers, J Sulston, R Ainscough, S Beck, D Bentley, J Burton, C Clee, N Carter, A Coulson, R Deadman, P Deloukas, A Dunham, I Dunham, R Durbin, L French, D Grafham, S Gregory, T Hubbard, S Humphray, A Hunt, M Jones, C Lloyd, A McMurray, L Matthews, S Mercer, S Milne, J C Mullikin, A Mungall, R Plumb, M Ross, R Shownkeen, S Sims, R H Waterston, R K Wilson, L W Hillier, J D McPherson, M A Marra, E R Mardis, L A Fulton, A T Chinwalla, K H Pepin, W R Gish, S L Chissoe, M C Wendl, K D Delehaunty, T L Miner, A Delehaunty, J B Kramer, L L Cook, R S Fulton, D L Johnson, P J Minx, S W Clifton, T Hawkins, E Branscomb, P Predki, P Richardson, S Wenning, T Slezak, N Doggett, J F Cheng, A Olsen, S Lucas, C Elkin, E Uberbacher, M Frazier, R A Gibbs, D M Muzny, S E Scherer, J B Bouck, E J Sodergren, K C Worley, C M Rives, J H Gorrell, M L Metzker, S L Naylor, R S Kucherlapati, D L Nelson, G M Weinstock, Y Sakaki, A Fujiyama, M Hattori, T Yada, A Toyoda, T Itoh, C Kawagoe, H Watanabe, Y Totoki, T Taylor, J Weissenbach, R Heilig, W Saurin, F Artiguenave, P Brottier, T Bruls, E Pelletier, C Robert, P Wincker, D R Smith, L Doucette-Stamm, M Rubenfield, K Weinstock, H M Lee, J Dubois, A Rosenthal, M Platzer, G Nyakatura, S Taudien, A Rump, H Yang, J Yu, J Wang, G Huang, J Gu, L Hood, L Rowen, A Madan, S Qin, R W Davis, N A Federspiel, A P Abola, M J Proctor, R M Myers, J Schmutz, M Dickson, J Grimwood, D R Cox, M V Olson, R Kaul, C Raymond, N Shimizu, K Kawasaki, S Minoshima, G A Evans, M Athanasiou, R Schultz, B A Roe, F Chen, H Pan, J Ramser, H Lehrach, R Reinhardt, W R McCombie, M de la Bastide, N Dedhia, H Blöcker, K Hornischer, G Nordsiek, R Agarwala, L Aravind, J A Bailey, A Bateman, S Batzoglou, E Birney, P Bork, D G Brown, C B Burge, L Cerutti, H C Chen, D Church, M Clamp, R R Copley, T Doerks, S R Eddy, E E Eichler, T S Furey, J Galagan, J G Gilbert, C Harmon, Y Hayashizaki, D Haussler, H Hermjakob, K Hokamp, W Jang, L S Johnson, T A Jones, S Kasif, A Kaspryzk, S Kennedy, W J Kent, P Kitts, E V Koonin, I Korf, D Kulp, D Lancet, T M Lowe, A McLysaght, T Mikkelsen, J V Moran, N Mulder, V J Pollara, C P Ponting, G Schuler, J Schultz, G Slater, A F Smit, E Stupka, J Szustakowki, D Thierry-Mieg, J Thierry-Mieg, L Wagner, J Wallis, R Wheeler, A Williams, Y I Wolf, K H Wolfe, S P Yang, R F Yeh, F Collins, M S Guyer, J Peterson, A Felsenfeld, K A Wetterstrand, A Patrinos, M J Morgan, P de Jong, J J Catanese, K Osoegawa, H Shizuya, S Choi, Y J Chen, J Szustakowki. Nature 2001
Times Cited: 14167







List of co-cited articles
652 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The sequence of the human genome.
J C Venter, M D Adams, E W Myers, P W Li, R J Mural, G G Sutton, H O Smith, M Yandell, C A Evans, R A Holt,[...]. Science 2001
18

Hot L1s account for the bulk of retrotransposition in the human population.
Brook Brouha, Joshua Schustak, Richard M Badge, Sheila Lutz-Prigge, Alexander H Farley, John V Moran, Haig H Kazazian. Proc Natl Acad Sci U S A 2003
649
16

Landscape of somatic retrotransposition in human cancers.
Eunjung Lee, Rebecca Iskow, Lixing Yang, Omer Gokcumen, Psalm Haseley, Lovelace J Luquette, Jens G Lohr, Christopher C Harris, Li Ding, Richard K Wilson,[...]. Science 2012
452
9

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
9

High frequency retrotransposition in cultured mammalian cells.
J V Moran, S E Holmes, T P Naas, R J DeBerardinis, J D Boeke, H H Kazazian. Cell 1996
733
9

Initial sequencing and comparative analysis of the mouse genome.
Robert H Waterston, Kerstin Lindblad-Toh, Ewan Birney, Jane Rogers, Josep F Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An,[...]. Nature 2002
9

Regulatory activities of transposable elements: from conflicts to benefits.
Edward B Chuong, Nels C Elde, Cédric Feschotte. Nat Rev Genet 2017
463
9

LINE-1 retrotransposition activity in human genomes.
Christine R Beck, Pamela Collier, Catriona Macfarlane, Maika Malig, Jeffrey M Kidd, Evan E Eichler, Richard M Badge, John V Moran. Cell 2010
363
9

The impact of retrotransposons on human genome evolution.
Richard Cordaux, Mark A Batzer. Nat Rev Genet 2009
936
8


Primate-specific ORF0 contributes to retrotransposon-mediated diversity.
Ahmet M Denli, Iñigo Narvaiza, Bilal E Kerman, Monique Pena, Christopher Benner, Maria C N Marchetto, Jolene K Diedrich, Aaron Aslanian, Jiao Ma, James J Moresco,[...]. Cell 2015
109
8

Roles for retrotransposon insertions in human disease.
Dustin C Hancks, Haig H Kazazian. Mob DNA 2016
263
8

LINE-mediated retrotransposition of marked Alu sequences.
Marie Dewannieux, Cécile Esnault, Thierry Heidmann. Nat Genet 2003
679
8



Regulatory evolution of innate immunity through co-option of endogenous retroviruses.
Edward B Chuong, Nels C Elde, Cédric Feschotte. Science 2016
355
7


Transposable elements drive widespread expression of oncogenes in human cancers.
Hyo Sik Jang, Nakul M Shah, Alan Y Du, Zea Z Dailey, Erica C Pehrsson, Paula M Godoy, David Zhang, Daofeng Li, Xiaoyun Xing, Sungsu Kim,[...]. Nat Genet 2019
78
8

Telomere-to-telomere assembly of a complete human X chromosome.
Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon,[...]. Nature 2020
140
6

Ubiquitous L1 mosaicism in hippocampal neurons.
Kyle R Upton, Daniel J Gerhardt, J Samuel Jesuadian, Sandra R Richardson, Francisco J Sánchez-Luque, Gabriela O Bodea, Adam D Ewing, Carmen Salvador-Palomeque, Marjo S van der Knaap, Paul M Brennan,[...]. Cell 2015
185
6

Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man.
H H Kazazian, C Wong, H Youssoufian, A F Scott, D G Phillips, S E Antonarakis. Nature 1988
643
6

Restricting retrotransposons: a review.
John L Goodier. Mob DNA 2016
178
6

An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons.
Frank M J Jacobs, David Greenberg, Ngan Nguyen, Maximilian Haeussler, Adam D Ewing, Sol Katzman, Benedict Paten, Sofie R Salama, David Haussler. Nature 2014
229
6

The Landscape of L1 Retrotransposons in the Human Genome Is Shaped by Pre-insertion Sequence Biases and Post-insertion Selection.
Tania Sultana, Dominic van Essen, Oliver Siol, Marc Bailly-Bechet, Claude Philippe, Amal Zine El Aabidine, Léo Pioger, Pilvi Nigumann, Simona Saccani, Jean-Christophe Andrau,[...]. Mol Cell 2019
46
13

LINE-1 elements in structural variation and disease.
Christine R Beck, José Luis Garcia-Perez, Richard M Badge, John V Moran. Annu Rev Genomics Hum Genet 2011
313
6

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
6

Reverse transcriptase encoded by a human transposable element.
S L Mathias, A F Scott, H H Kazazian, J D Boeke, A Gabriel. Science 1991
559
6


Multi-platform discovery of haplotype-resolved structural variation in human genomes.
Mark J P Chaisson, Ashley D Sanders, Xuefang Zhao, Ankit Malhotra, David Porubsky, Tobias Rausch, Eugene J Gardner, Oscar L Rodriguez, Li Guo, Ryan L Collins,[...]. Nat Commun 2019
228
6



Ten things you should know about transposable elements.
Guillaume Bourque, Kathleen H Burns, Mary Gehring, Vera Gorbunova, Andrei Seluanov, Molly Hammell, Michaël Imbeault, Zsuzsanna Izsvák, Henry L Levin, Todd S Macfarlan,[...]. Genome Biol 2018
221
5

Transposable elements and the epigenetic regulation of the genome.
R Keith Slotkin, Robert Martienssen. Nat Rev Genet 2007
5

Widespread contribution of transposable elements to the innovation of gene regulatory networks.
Vasavi Sundaram, Yong Cheng, Zhihai Ma, Daofeng Li, Xiaoyun Xing, Peter Edge, Michael P Snyder, Ting Wang. Genome Res 2014
194
5


L1 retrotransposition in human neural progenitor cells.
Nicole G Coufal, José L Garcia-Perez, Grace E Peng, Gene W Yeo, Yangling Mu, Michael T Lovci, Maria Morell, K Sue O'Shea, John V Moran, Fred H Gage. Nature 2009
523
5

Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition.
Alysson R Muotri, Vi T Chu, Maria C N Marchetto, Wei Deng, John V Moran, Fred H Gage. Nature 2005
597
5

Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs.
Aurélie Kapusta, Zev Kronenberg, Vincent J Lynch, Xiaoyu Zhuo, LeeAnn Ramsay, Guillaume Bourque, Mark Yandell, Cédric Feschotte. PLoS Genet 2013
346
5

LINE1 Derepression in Aged Wild-Type and SIRT6-Deficient Mice Drives Inflammation.
Matthew Simon, Michael Van Meter, Julia Ablaeva, Zhonghe Ke, Raul S Gonzalez, Taketo Taguchi, Marco De Cecco, Katerina I Leonova, Valeria Kogan, Stephen L Helfand,[...]. Cell Metab 2019
93
5

Isolation of an active human transposable element.
B A Dombroski, S L Mathias, E Nanthakumar, A F Scott, H H Kazazian. Science 1991
368
5


Transcription factor profiling reveals molecular choreography and key regulators of human retrotransposon expression.
Xiaoji Sun, Xuya Wang, Zuojian Tang, Mark Grivainis, David Kahler, Chi Yun, Paolo Mita, David Fenyö, Jef D Boeke. Proc Natl Acad Sci U S A 2018
27
18


A unified classification system for eukaryotic transposable elements.
Thomas Wicker, François Sabot, Aurélie Hua-Van, Jeffrey L Bennetzen, Pierre Capy, Boulos Chalhoub, Andrew Flavell, Philippe Leroy, Michele Morgante, Olivier Panaud,[...]. Nat Rev Genet 2007
5

KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks.
Michaël Imbeault, Pierre-Yves Helleboid, Didier Trono. Nature 2017
185
5

MOV10 RNA helicase is a potent inhibitor of retrotransposition in cells.
John L Goodier, Ling E Cheung, Haig H Kazazian. PLoS Genet 2012
127
5

Transposable elements in cancer.
Kathleen H Burns. Nat Rev Cancer 2017
166
5

Genome-wide de novo L1 Retrotransposition Connects Endonuclease Activity with Replication.
Diane A Flasch, Ángela Macia, Laura Sánchez, Mats Ljungman, Sara R Heras, José L García-Pérez, Thomas E Wilson, John V Moran. Cell 2019
42
11

L1 Mosaicism in Mammals: Extent, Effects, and Evolution.
Geoffrey J Faulkner, Jose L Garcia-Perez. Trends Genet 2017
55
9

Natural mutagenesis of human genomes by endogenous retrotransposons.
Rebecca C Iskow, Michael T McCabe, Ryan E Mills, Spencer Torene, W Stephen Pittard, Andrew F Neuwald, Erwin G Van Meir, Paula M Vertino, Scott E Devine. Cell 2010
394
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.