A citation-based method for searching scientific literature

T Nagai, A Sawano, E S Park, A Miyawaki. Proc Natl Acad Sci U S A 2001
Times Cited: 707







List of co-cited articles
891 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin.
A Miyawaki, J Llopis, R Heim, J M McCaffery, J A Adams, M Ikura, R Y Tsien. Nature 1997
43


An expanded palette of genetically encoded Ca²⁺ indicators.
Yongxin Zhao, Satoko Araki, Jiahui Wu, Takayuki Teramoto, Yu-Fen Chang, Masahiro Nakano, Ahmed S Abdelfattah, Manabi Fujiwara, Takeshi Ishihara, Takeharu Nagai,[...]. Science 2011
813
40

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
39

Circular permutation and receptor insertion within green fluorescent proteins.
G S Baird, D A Zacharias, R Y Tsien. Proc Natl Acad Sci U S A 1999
623
34

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat Methods 2009
23

Expanded dynamic range of fluorescent indicators for Ca(2+) by circularly permuted yellow fluorescent proteins.
Takeharu Nagai, Shuichi Yamada, Takashi Tominaga, Michinori Ichikawa, Atsushi Miyawaki. Proc Natl Acad Sci U S A 2004
759
21

Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
743
20

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
289
19

Reducing the environmental sensitivity of yellow fluorescent protein. Mechanism and applications.
O Griesbeck, G S Baird, R E Campbell, D A Zacharias, R Y Tsien. J Biol Chem 2001
767
18

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
421
17

Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics.
Jasper Akerboom, Nicole Carreras Calderón, Lin Tian, Sebastian Wabnig, Matthias Prigge, Johan Tolö, Andrew Gordus, Michael B Orger, Kristen E Severi, John J Macklin,[...]. Front Mol Neurosci 2013
420
17

Genetically encoded indicators of neuronal activity.
Michael Z Lin, Mark J Schnitzer. Nat Neurosci 2016
312
13

A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578.
Yi Shen, Hod Dana, Ahmed S Abdelfattah, Ronak Patel, Jamien Shea, Rosana S Molina, Bijal Rawal, Vladimir Rancic, Yu-Fen Chang, Lanshi Wu,[...]. BMC Biol 2018
50
24

A forty-kilodalton protein of the inner membrane is the mitochondrial calcium uniporter.
Diego De Stefani, Anna Raffaello, Enrico Teardo, Ildikò Szabò, Rosario Rizzuto. Nature 2011
12


Genetically encoded Ca(2+) indicators: properties and evaluation.
Vadim Pérez Koldenkova, Takeharu Nagai. Biochim Biophys Acta 2013
117
12

Rational Engineering of XCaMPs, a Multicolor GECI Suite for In Vivo Imaging of Complex Brain Circuit Dynamics.
Masatoshi Inoue, Atsuya Takeuchi, Satoshi Manita, Shin-Ichiro Horigane, Masayuki Sakamoto, Ryosuke Kawakami, Kazushi Yamaguchi, Kouhei Otomo, Hiroyuki Yokoyama, Ryang Kim,[...]. Cell 2019
97
12

A genetically encoded near-infrared fluorescent calcium ion indicator.
Yong Qian, Kiryl D Piatkevich, Benedict Mc Larney, Ahmed S Abdelfattah, Sohum Mehta, Mitchell H Murdock, Sven Gottschalk, Rosana S Molina, Wei Zhang, Yingche Chen,[...]. Nat Methods 2019
80
15

Rational design of a high-affinity, fast, red calcium indicator R-CaMP2.
Masatoshi Inoue, Atsuya Takeuchi, Shin-ichiro Horigane, Masamichi Ohkura, Keiko Gengyo-Ando, Hajime Fujii, Satoshi Kamijo, Sayaka Takemoto-Kimura, Masanobu Kano, Junichi Nakai,[...]. Nat Methods 2015
151
11

Imaging cellular signals in the heart in vivo: Cardiac expression of the high-signal Ca2+ indicator GCaMP2.
Yvonne N Tallini, Masamichi Ohkura, Bum-Rak Choi, Guangju Ji, Keiji Imoto, Robert Doran, Jane Lee, Patricia Plan, Jason Wilson, Hong-Bo Xin,[...]. Proc Natl Acad Sci U S A 2006
323
11



Ca2+ indicators based on computationally redesigned calmodulin-peptide pairs.
Amy E Palmer, Marta Giacomello, Tanja Kortemme, S Andrew Hires, Varda Lev-Ram, David Baker, Roger Y Tsien. Chem Biol 2006
368
11

Imaging intraorganellar Ca2+ at subcellular resolution using CEPIA.
Junji Suzuki, Kazunori Kanemaru, Kuniaki Ishii, Masamichi Ohkura, Yohei Okubo, Masamitsu Iino. Nat Commun 2014
233
11

Crystal structures of the GCaMP calcium sensor reveal the mechanism of fluorescence signal change and aid rational design.
Jasper Akerboom, Jonathan D Vélez Rivera, María M Rodríguez Guilbe, Elisa C Alfaro Malavé, Hector H Hernandez, Lin Tian, S Andrew Hires, Jonathan S Marvin, Loren L Looger, Eric R Schreiter. J Biol Chem 2009
167
11

Chemical calcium indicators.
R Madelaine Paredes, Julie C Etzler, Lora Talley Watts, Wei Zheng, James D Lechleiter. Methods 2008
329
11

Red fluorescent genetically encoded Ca2+ indicators for use in mitochondria and endoplasmic reticulum.
Jiahui Wu, David L Prole, Yi Shen, Zhihong Lin, Aswini Gnanasekaran, Yingjie Liu, Lidong Chen, Hang Zhou, S R Wayne Chen, Yuriy M Usachev,[...]. Biochem J 2014
90
11




The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins.
Erik A Rodriguez, Robert E Campbell, John Y Lin, Michael Z Lin, Atsushi Miyawaki, Amy E Palmer, Xiaokun Shu, Jin Zhang, Roger Y Tsien. Trends Biochem Sci 2017
290
10

A Genetically Encoded Fluorescent Sensor Enables Rapid and Specific Detection of Dopamine in Flies, Fish, and Mice.
Fangmiao Sun, Jianzhi Zeng, Miao Jing, Jingheng Zhou, Jiesi Feng, Scott F Owen, Yichen Luo, Funing Li, Huan Wang, Takashi Yamaguchi,[...]. Cell 2018
268
10

Optimized ratiometric calcium sensors for functional in vivo imaging of neurons and T lymphocytes.
Thomas Thestrup, Julia Litzlbauer, Ingo Bartholomäus, Marsilius Mues, Luigi Russo, Hod Dana, Yuri Kovalchuk, Yajie Liang, Georgios Kalamakis, Yvonne Laukat,[...]. Nat Methods 2014
198
10

Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors.
Tommaso Patriarchi, Jounhong Ryan Cho, Katharina Merten, Mark W Howe, Aaron Marley, Wei-Hong Xiong, Robert W Folk, Gerard Joey Broussard, Ruqiang Liang, Min Jee Jang,[...]. Science 2018
348
10


Visualization of ATP levels inside single living cells with fluorescence resonance energy transfer-based genetically encoded indicators.
Hiromi Imamura, Kim P Huynh Nhat, Hiroko Togawa, Kenta Saito, Ryota Iino, Yasuyuki Kato-Yamada, Takeharu Nagai, Hiroyuki Noji. Proc Natl Acad Sci U S A 2009
621
9

Integrative genomics identifies MCU as an essential component of the mitochondrial calcium uniporter.
Joshua M Baughman, Fabiana Perocchi, Hany S Girgis, Molly Plovanich, Casey A Belcher-Timme, Yasemin Sancak, X Robert Bao, Laura Strittmatter, Olga Goldberger, Roman L Bogorad,[...]. Nature 2011
9

The versatility and universality of calcium signalling.
M J Berridge, P Lipp, M D Bootman. Nat Rev Mol Cell Biol 2000
9

Spontaneous network activity visualized by ultrasensitive Ca(2+) indicators, yellow Cameleon-Nano.
Kazuki Horikawa, Yoshiyuki Yamada, Tomoki Matsuda, Kentarou Kobayashi, Mitsuhiro Hashimoto, Toru Matsu-ura, Atsushi Miyawaki, Takayuki Michikawa, Katsuhiko Mikoshiba, Takeharu Nagai. Nat Methods 2010
239
9


Genetically encoded fluorescent indicator for intracellular hydrogen peroxide.
Vsevolod V Belousov, Arkady F Fradkov, Konstantin A Lukyanov, Dmitry B Staroverov, Konstantin S Shakhbazov, Alexey V Terskikh, Sergey Lukyanov. Nat Methods 2006
837
9

A Genetically Encoded Fluorescent Sensor for Rapid and Specific In Vivo Detection of Norepinephrine.
Jiesi Feng, Changmei Zhang, Julieta E Lischinsky, Miao Jing, Jingheng Zhou, Huan Wang, Yajun Zhang, Ao Dong, Zhaofa Wu, Hao Wu,[...]. Neuron 2019
143
9

A genetically encoded fluorescent reporter of ATP:ADP ratio.
Jim Berg, Yin Pun Hung, Gary Yellen. Nat Methods 2009
307
9

The green fluorescent protein.
R Y Tsien. Annu Rev Biochem 1998
9

Neural circuits. Labeling of active neural circuits in vivo with designed calcium integrators.
Benjamin F Fosque, Yi Sun, Hod Dana, Chao-Tsung Yang, Tomoko Ohyama, Michael R Tadross, Ronak Patel, Marta Zlatic, Douglas S Kim, Misha B Ahrens,[...]. Science 2015
220
9

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
626
8

MICU1 and MICU2 finely tune the mitochondrial Ca2+ uniporter by exerting opposite effects on MCU activity.
Maria Patron, Vanessa Checchetto, Anna Raffaello, Enrico Teardo, Denis Vecellio Reane, Maura Mantoan, Veronica Granatiero, Ildikò Szabò, Diego De Stefani, Rosario Rizzuto. Mol Cell 2014
334
8

A FRET-based calcium biosensor with fast signal kinetics and high fluorescence change.
Marco Mank, Dierk F Reiff, Nicola Heim, Michael W Friedrich, Alexander Borst, Oliver Griesbeck. Biophys J 2006
213
8

Genetically encoded fluorescent sensors reveal dynamic regulation of NADPH metabolism.
Rongkun Tao, Yuzheng Zhao, Huanyu Chu, Aoxue Wang, Jiahuan Zhu, Xianjun Chen, Yejun Zou, Mei Shi, Renmei Liu, Ni Su,[...]. Nat Methods 2017
134
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.