A citation-based method for searching scientific literature

M W Pfaffl. Nucleic Acids Res 2001
Times Cited: 20219







List of co-cited articles
65 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.
Jo Vandesompele, Katleen De Preter, Filip Pattyn, Bruce Poppe, Nadine Van Roy, Anne De Paepe, Frank Speleman. Genome Biol 2002
7

The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments.
Stephen A Bustin, Vladimir Benes, Jeremy A Garson, Jan Hellemans, Jim Huggett, Mikael Kubista, Reinhold Mueller, Tania Nolan, Michael W Pfaffl, Gregory L Shipley,[...]. Clin Chem 2009
5



Mapping and quantifying mammalian transcriptomes by RNA-Seq.
Ali Mortazavi, Brian A Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold. Nat Methods 2008
3

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
Cole Trapnell, Brian A Williams, Geo Pertea, Ali Mortazavi, Gordon Kwan, Marijke J van Baren, Steven L Salzberg, Barbara J Wold, Lior Pachter. Nat Biotechnol 2010
3

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
3

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
3

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
3

Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
3


Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data.
Christian Ramakers, Jan M Ruijter, Ronald H Lekanne Deprez, Antoon F M Moorman. Neurosci Lett 2003
3

Selection of reliable reference genes for gene expression studies in peach using real-time PCR.
Zhaoguo Tong, Zhihong Gao, Fei Wang, Jun Zhou, Zhen Zhang. BMC Mol Biol 2009
268
3

Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction.
Jian Ye, George Coulouris, Irena Zaretskaya, Ioana Cutcutache, Steve Rozen, Thomas L Madden. BMC Bioinformatics 2012
3



Human housekeeping genes, revisited.
Eli Eisenberg, Erez Y Levanon. Trends Genet 2013
541
2

Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system.
David Bikard, Wenyan Jiang, Poulami Samai, Ann Hochschild, Feng Zhang, Luciano A Marraffini. Nucleic Acids Res 2013
509
2

Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression.
Lei S Qi, Matthew H Larson, Luke A Gilbert, Jennifer A Doudna, Jonathan S Weissman, Adam P Arkin, Wendell A Lim. Cell 2013
2

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
2

Primer3--new capabilities and interfaces.
Andreas Untergasser, Ioana Cutcutache, Triinu Koressaar, Jian Ye, Brant C Faircloth, Maido Remm, Steven G Rozen. Nucleic Acids Res 2012
2




Lignins: Biosynthesis and Biological Functions in Plants.
Qingquan Liu, Le Luo, Luqing Zheng. Int J Mol Sci 2018
136
2

Elevated CO2 induces alteration in lignin accumulation in celery (Apium graveolens L.).
Jie-Xia Liu, Kai Feng, Guang-Long Wang, Zhi-Sheng Xu, Feng Wang, Ai-Sheng Xiong. Plant Physiol Biochem 2018
5
40

Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis.
Tomasz Czechowski, Mark Stitt, Thomas Altmann, Michael K Udvardi, Wolf-Rüdiger Scheible. Plant Physiol 2005
2

Reactive oxygen species in plant development.
Amna Mhamdi, Frank Van Breusegem. Development 2018
104
2

A membrane-bound NAC transcription factor regulates cell division in Arabidopsis.
Youn-Sung Kim, Sang-Gyu Kim, Jung-Eun Park, Hye-Young Park, Mi-Hye Lim, Nam-Hai Chua, Chung-Mo Park. Plant Cell 2006
212
2

The Phyre2 web portal for protein modeling, prediction and analysis.
Lawrence A Kelley, Stefans Mezulis, Christopher M Yates, Mark N Wass, Michael J E Sternberg. Nat Protoc 2015
2

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.
Evguenia Kopylova, Laurent Noé, Hélène Touzet. Bioinformatics 2012
785
2


Effect of vitrification using the Cryotop method on the gene expression profile of in vitro-produced bovine embryos.
Ligiane de Oliveira Leme, Isabelle Dufort, José Felipe Warmling Spricigo, Thiago Felipe Braga, Marc-André Sirard, Maurício Machaim Franco, Margot Alves Nunes Dode. Theriogenology 2016
14
14

Evaluation of post-thaw DNA integrity of mouse blastocysts after ultrarapid and slow freezing.
Amr Kader, Ashok Agarwal, Hussein Abdelrazik, Rakesh K Sharma, Ali Ahmady, Tommaso Falcone. Fertil Steril 2009
28
7

Adaptation of Root Function by Nutrient-Induced Plasticity of Endodermal Differentiation.
Marie Barberon, Joop Engelbertus Martinus Vermeer, Damien De Bellis, Peng Wang, Sadaf Naseer, Tonni Grube Andersen, Bruno Martin Humbel, Christiane Nawrath, Junpei Takano, David Edward Salt,[...]. Cell 2016
159
2


De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.
Brian J Haas, Alexie Papanicolaou, Moran Yassour, Manfred Grabherr, Philip D Blood, Joshua Bowden, Matthew Brian Couger, David Eccles, Bo Li, Matthias Lieber,[...]. Nat Protoc 2013
2


g:Profiler-a web server for functional interpretation of gene lists (2016 update).
Jüri Reimand, Tambet Arak, Priit Adler, Liis Kolberg, Sulev Reisberg, Hedi Peterson, Jaak Vilo. Nucleic Acids Res 2016
595
2

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
2

miRDeepFinder: a miRNA analysis tool for deep sequencing of plant small RNAs.
Fuliang Xie, Peng Xiao, Dongliang Chen, Lei Xu, Baohong Zhang. Plant Mol Biol 2012
483
2

Differential expression analysis for sequence count data.
Simon Anders, Wolfgang Huber. Genome Biol 2010
2

Gas chromatography mass spectrometry-based metabolite profiling in plants.
Jan Lisec, Nicolas Schauer, Joachim Kopka, Lothar Willmitzer, Alisdair R Fernie. Nat Protoc 2006
990
2

TargetSearch--a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data.
Alvaro Cuadros-Inostroza, Camila Caldana, Henning Redestig, Miyako Kusano, Jan Lisec, Hugo Peña-Cortés, Lothar Willmitzer, Matthew A Hannah. BMC Bioinformatics 2009
117
2


Catalase in vitro.
H Aebi. Methods Enzymol 1984
2

Antagonistic Efficacy of Luteolin against Lead Acetate Exposure-Associated with Hepatotoxicity is Mediated via Antioxidant, Anti-Inflammatory, and Anti-Apoptotic Activities.
Wafa A Al-Megrin, Afrah F Alkhuriji, Al Omar S Yousef, Dina M Metwally, Ola A Habotta, Rami B Kassab, Ahmed E Abdel Moneim, Manal F El-Khadragy. Antioxidants (Basel) 2019
27
7

Tissue sulfhydryl groups.
G L ELLMAN. Arch Biochem Biophys 1959
2



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.