A citation-based method for searching scientific literature

M W Pfaffl. Nucleic Acids Res 2001
Times Cited: 21144







List of co-cited articles
74 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.
Jo Vandesompele, Katleen De Preter, Filip Pattyn, Bruce Poppe, Nadine Van Roy, Anne De Paepe, Frank Speleman. Genome Biol 2002
9


Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
5

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
4

The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments.
Stephen A Bustin, Vladimir Benes, Jeremy A Garson, Jan Hellemans, Jim Huggett, Mikael Kubista, Reinhold Mueller, Tania Nolan, Michael W Pfaffl, Gregory L Shipley,[...]. Clin Chem 2009
4


Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
4


Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data.
J M Ruijter, C Ramakers, W M H Hoogaars, Y Karlen, O Bakker, M J B van den Hoff, A F M Moorman. Nucleic Acids Res 2009
4

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Damian Szklarczyk, John H Morris, Helen Cook, Michael Kuhn, Stefan Wyder, Milan Simonovic, Alberto Santos, Nadezhda T Doncheva, Alexander Roth, Peer Bork,[...]. Nucleic Acids Res 2017
3

Primer3--new capabilities and interfaces.
Andreas Untergasser, Ioana Cutcutache, Triinu Koressaar, Jian Ye, Brant C Faircloth, Maido Remm, Steven G Rozen. Nucleic Acids Res 2012
3

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
Sudhir Kumar, Glen Stecher, Michael Li, Christina Knyaz, Koichiro Tamura. Mol Biol Evol 2018
3

Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction.
Jian Ye, George Coulouris, Irena Zaretskaya, Ioana Cutcutache, Steve Rozen, Thomas L Madden. BMC Bioinformatics 2012
3


De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.
Brian J Haas, Alexie Papanicolaou, Moran Yassour, Manfred Grabherr, Philip D Blood, Joshua Bowden, Matthew Brian Couger, David Eccles, Bo Li, Matthias Lieber,[...]. Nat Protoc 2013
3

g:Profiler-a web server for functional interpretation of gene lists (2016 update).
Jüri Reimand, Tambet Arak, Priit Adler, Liis Kolberg, Sulev Reisberg, Hedi Peterson, Jaak Vilo. Nucleic Acids Res 2016
637
3

Analyzing real-time PCR data by the comparative C(T) method.
Thomas D Schmittgen, Kenneth J Livak. Nat Protoc 2008
3

Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Manfred G Grabherr, Brian J Haas, Moran Yassour, Joshua Z Levin, Dawn A Thompson, Ido Amit, Xian Adiconis, Lin Fan, Raktima Raychowdhury, Qiandong Zeng,[...]. Nat Biotechnol 2011
3



HTSeq--a Python framework to work with high-throughput sequencing data.
Simon Anders, Paul Theodor Pyl, Wolfgang Huber. Bioinformatics 2015
3


Dmrt1 is necessary for male sexual development in zebrafish.
Kaitlyn A Webster, Ursula Schach, Angel Ordaz, Jocelyn S Steinfeld, Bruce W Draper, Kellee R Siegfried. Dev Biol 2017
92
2


Human housekeeping genes, revisited.
Eli Eisenberg, Erez Y Levanon. Trends Genet 2013
570
2

Mapping and quantifying mammalian transcriptomes by RNA-Seq.
Ali Mortazavi, Brian A Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold. Nat Methods 2008
2

Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system.
David Bikard, Wenyan Jiang, Poulami Samai, Ann Hochschild, Feng Zhang, Luciano A Marraffini. Nucleic Acids Res 2013
533
2

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
2



Lignins: Biosynthesis and Biological Functions in Plants.
Qingquan Liu, Le Luo, Luqing Zheng. Int J Mol Sci 2018
156
2

Elevated CO2 induces alteration in lignin accumulation in celery (Apium graveolens L.).
Jie-Xia Liu, Kai Feng, Guang-Long Wang, Zhi-Sheng Xu, Feng Wang, Ai-Sheng Xiong. Plant Physiol Biochem 2018
7
28

Primer3Plus, an enhanced web interface to Primer3.
Andreas Untergasser, Harm Nijveen, Xiangyu Rao, Ton Bisseling, René Geurts, Jack A M Leunissen. Nucleic Acids Res 2007
2


Circulating microRNAs as novel biomarkers for diabetes mellitus.
Claudiane Guay, Romano Regazzi. Nat Rev Endocrinol 2013
348
2

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
2


Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
2

miRDeepFinder: a miRNA analysis tool for deep sequencing of plant small RNAs.
Fuliang Xie, Peng Xiao, Dongliang Chen, Lei Xu, Baohong Zhang. Plant Mol Biol 2012
518
2


Catalase in vitro.
H Aebi. Methods Enzymol 1984
2

Antagonistic Efficacy of Luteolin against Lead Acetate Exposure-Associated with Hepatotoxicity is Mediated via Antioxidant, Anti-Inflammatory, and Anti-Apoptotic Activities.
Wafa A Al-Megrin, Afrah F Alkhuriji, Al Omar S Yousef, Dina M Metwally, Ola A Habotta, Rami B Kassab, Ahmed E Abdel Moneim, Manal F El-Khadragy. Antioxidants (Basel) 2019
31
6

Tissue sulfhydryl groups.
G L ELLMAN. Arch Biochem Biophys 1959
2


Analysis of nitrate, nitrite, and [15N]nitrate in biological fluids.
L C Green, D A Wagner, J Glogowski, P L Skipper, J S Wishnok, S R Tannenbaum. Anal Biochem 1982
2


Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
2

The biogenesis, biology and characterization of circular RNAs.
Lasse S Kristensen, Maria S Andersen, Lotte V W Stagsted, Karoline K Ebbesen, Thomas B Hansen, Jørgen Kjems. Nat Rev Genet 2019
688
2




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.