A citation-based method for searching scientific literature

Y Ogura, D K Bonen, N Inohara, D L Nicolae, F F Chen, R Ramos, H Britton, T Moran, R Karaliuskas, R H Duerr, J P Achkar, S R Brant, T M Bayless, B S Kirschner, S B Hanauer, G Nuñez, J H Cho. Nature 2001
Times Cited: 3614







List of co-cited articles
1328 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease.
J P Hugot, M Chamaillard, H Zouali, S Lesage, J P Cézard, J Belaiche, S Almer, C Tysk, C A O'Morain, M Gassull,[...]. Nature 2001
59

Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Luke Jostins, Stephan Ripke, Rinse K Weersma, Richard H Duerr, Dermot P McGovern, Ken Y Hui, James C Lee, L Philip Schumm, Yashoda Sharma, Carl A Anderson,[...]. Nature 2012
31

Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Jimmy Z Liu, Suzanne van Sommeren, Hailiang Huang, Siew C Ng, Rudi Alberts, Atsushi Takahashi, Stephan Ripke, James C Lee, Luke Jostins, Tejas Shah,[...]. Nat Genet 2015
21

Nod2 is a general sensor of peptidoglycan through muramyl dipeptide (MDP) detection.
Stephen E Girardin, Ivo G Boneca, Jérôme Viala, Mathias Chamaillard, Agnès Labigne, Gilles Thomas, Dana J Philpott, Philippe J Sansonetti. J Biol Chem 2003
19

A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells.
Ken Cadwell, John Y Liu, Sarah L Brown, Hiroyuki Miyoshi, Joy Loh, Jochen K Lennerz, Chieko Kishi, Wumesh Kc, Javier A Carrero, Steven Hunt,[...]. Nature 2008
13

A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1.
Jochen Hampe, Andre Franke, Philip Rosenstiel, Andreas Till, Markus Teuber, Klaus Huse, Mario Albrecht, Gabriele Mayr, Francisco M De La Vega, Jason Briggs,[...]. Nat Genet 2007
13

NOD1 and NOD2: signaling, host defense, and inflammatory disease.
Roberta Caruso, Neil Warner, Naohiro Inohara, Gabriel Núñez. Immunity 2014
376
11

Host recognition of bacterial muramyl dipeptide mediated through NOD2. Implications for Crohn's disease.
Naohiro Inohara, Yasunori Ogura, Ana Fontalba, Olga Gutierrez, Fernando Pons, Javier Crespo, Koichi Fukase, Seiichi Inamura, Shoichi Kusumoto, Masahito Hashimoto,[...]. J Biol Chem 2003
11

Nod1 and Nod2 direct autophagy by recruiting ATG16L1 to the plasma membrane at the site of bacterial entry.
Leonardo H Travassos, Leticia A M Carneiro, Mahendrasingh Ramjeet, Seamus Hussey, Yun-Gi Kim, João G Magalhães, Linda Yuan, Fraser Soares, Evelyn Chea, Lionel Le Bourhis,[...]. Nat Immunol 2010
912
11

NOD2 stimulation induces autophagy in dendritic cells influencing bacterial handling and antigen presentation.
Rachel Cooney, John Baker, Oliver Brain, Benedicte Danis, Tica Pichulik, Philip Allan, David J P Ferguson, Barry J Campbell, Derek Jewell, Alison Simmons. Nat Med 2010
739
11

Worldwide incidence and prevalence of inflammatory bowel disease in the 21st century: a systematic review of population-based studies.
Siew C Ng, Hai Yun Shi, Nima Hamidi, Fox E Underwood, Whitney Tang, Eric I Benchimol, Remo Panaccione, Subrata Ghosh, Justin C Y Wu, Francis K L Chan,[...]. Lancet 2017
10

Genetics and pathogenesis of inflammatory bowel disease.
Bernard Khor, Agnès Gardet, Ramnik J Xavier. Nature 2011
9

Inherited determinants of Crohn's disease and ulcerative colitis phenotypes: a genetic association study.
Isabelle Cleynen, Gabrielle Boucher, Luke Jostins, L Philip Schumm, Sebastian Zeissig, Tariq Ahmad, Vibeke Andersen, Jane M Andrews, Vito Annese, Stephan Brand,[...]. Lancet 2016
399
9

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases.
Daniel N Frank, Allison L St Amand, Robert A Feldman, Edgar C Boedeker, Noam Harpaz, Norman R Pace. Proc Natl Acad Sci U S A 2007
9

XBP1 links ER stress to intestinal inflammation and confers genetic risk for human inflammatory bowel disease.
Arthur Kaser, Ann-Hwee Lee, Andre Franke, Jonathan N Glickman, Sebastian Zeissig, Herbert Tilg, Edward E S Nieuwenhuis, Darren E Higgins, Stefan Schreiber, Laurie H Glimcher,[...]. Cell 2008
968
9

Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.
Katrina M de Lange, Loukas Moutsianas, James C Lee, Christopher A Lamb, Yang Luo, Nicholas A Kennedy, Luke Jostins, Daniel L Rice, Javier Gutierrez-Achury, Sun-Gou Ji,[...]. Nat Genet 2017
441
9

NOD2-mediated dysbiosis predisposes mice to transmissible colitis and colorectal cancer.
Aurélie Couturier-Maillard, Thomas Secher, Ateequr Rehman, Sylvain Normand, Adèle De Arcangelis, Robert Haesler, Ludovic Huot, Teddy Grandjean, Aude Bressenot, Anne Delanoye-Crespin,[...]. J Clin Invest 2013
365
8

NOD proteins: regulators of inflammation in health and disease.
Dana J Philpott, Matthew T Sorbara, Susan J Robertson, Kenneth Croitoru, Stephen E Girardin. Nat Rev Immunol 2014
378
8

The treatment-naive microbiome in new-onset Crohn's disease.
Dirk Gevers, Subra Kugathasan, Lee A Denson, Yoshiki Vázquez-Baeza, Will Van Treuren, Boyu Ren, Emma Schwager, Dan Knights, Se Jin Song, Moran Yassour,[...]. Cell Host Microbe 2014
8

A critical role of RICK/RIP2 polyubiquitination in Nod-induced NF-kappaB activation.
Mizuho Hasegawa, Yukari Fujimoto, Peter C Lucas, Hiroyasu Nakano, Koichi Fukase, Gabriel Núñez, Naohiro Inohara. EMBO J 2008
370
8

CARD15 mutations in Blau syndrome.
C Miceli-Richard, S Lesage, M Rybojad, A M Prieur, S Manouvrier-Hanu, R Häfner, M Chamaillard, H Zouali, G Thomas, J P Hugot. Nat Genet 2001
697
8

Disease-causing mutations in the XIAP BIR2 domain impair NOD2-dependent immune signalling.
Rune Busk Damgaard, Berthe Katrine Fiil, Carsten Speckmann, Monica Yabal, Udo zur Stadt, Simon Bekker-Jensen, Philipp J Jost, Stephan Ehl, Niels Mailand, Mads Gyrd-Hansen. EMBO Mol Med 2013
107
8

A Crohn's disease variant in Atg16l1 enhances its degradation by caspase 3.
Aditya Murthy, Yun Li, Ivan Peng, Mike Reichelt, Anand Kumar Katakam, Rajkumar Noubade, Merone Roose-Girma, Jason DeVoss, Lauri Diehl, Robert R Graham,[...]. Nature 2014
252
8



Crohn's disease.
Joana Torres, Saurabh Mehandru, Jean-Frédéric Colombel, Laurent Peyrin-Biroulet. Lancet 2017
780
8

High prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn's disease.
Arlette Darfeuille-Michaud, Jérôme Boudeau, Philippe Bulois, Christel Neut, Anne-Lise Glasser, Nicolas Barnich, Marie-Agnès Bringer, Alexander Swidsinski, Laurent Beaugerie, Jean-Frédéric Colombel. Gastroenterology 2004
8

ATG16L1 and NOD2 interact in an autophagy-dependent antibacterial pathway implicated in Crohn's disease pathogenesis.
Craig R Homer, Amy L Richmond, Nancy A Rebert, Jean-Paul Achkar, Christine McDonald. Gastroenterology 2010
258
8

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients.
Harry Sokol, Bénédicte Pigneur, Laurie Watterlot, Omar Lakhdari, Luis G Bermúdez-Humarán, Jean-Jacques Gratadoux, Sébastien Blugeon, Chantal Bridonneau, Jean-Pierre Furet, Gérard Corthier,[...]. Proc Natl Acad Sci U S A 2008
8

The microbiome in inflammatory bowel disease: current status and the future ahead.
Aleksandar D Kostic, Ramnik J Xavier, Dirk Gevers. Gastroenterology 2014
930
8

Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.
John D Rioux, Ramnik J Xavier, Kent D Taylor, Mark S Silverberg, Philippe Goyette, Alan Huett, Todd Green, Petric Kuballa, M Michael Barmada, Lisa Wu Datta,[...]. Nat Genet 2007
8

Toward an integrated clinical, molecular and serological classification of inflammatory bowel disease: report of a Working Party of the 2005 Montreal World Congress of Gastroenterology.
Mark S Silverberg, Jack Satsangi, Tariq Ahmad, Ian D R Arnott, Charles N Bernstein, Steven R Brant, Renzo Caprilli, Jean-Frédéric Colombel, Christoph Gasche, Karel Geboes,[...]. Can J Gastroenterol 2005
8

Paneth cells as a site of origin for intestinal inflammation.
Timon E Adolph, Michal F Tomczak, Lukas Niederreiter, Hyun-Jeong Ko, Janne Böck, Eduardo Martinez-Naves, Jonathan N Glickman, Markus Tschurtschenthaler, John Hartwig, Shuhei Hosomi,[...]. Nature 2013
434
8

Nod2, a Nod1/Apaf-1 family member that is restricted to monocytes and activates NF-kappaB.
Y Ogura, N Inohara, A Benito, F F Chen, S Yamaoka, G Nunez. J Biol Chem 2001
7

NOD2 (CARD15) mutations in Crohn's disease are associated with diminished mucosal alpha-defensin expression.
J Wehkamp, J Harder, M Weichenthal, M Schwab, E Schäffeler, M Schlee, K R Herrlinger, A Stallmach, F Noack, P Fritz,[...]. Gut 2004
586
7

The ubiquitin ligase XIAP recruits LUBAC for NOD2 signaling in inflammation and innate immunity.
Rune Busk Damgaard, Ueli Nachbur, Monica Yabal, Wendy Wei-Lynn Wong, Berthe Katrine Fiil, Mischa Kastirr, Eva Rieser, James Arthur Rickard, Aleksandra Bankovacki, Christian Peschel,[...]. Mol Cell 2012
260
7

Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.
Andre Franke, Dermot P B McGovern, Jeffrey C Barrett, Kai Wang, Graham L Radford-Smith, Tariq Ahmad, Charlie W Lees, Tobias Balschun, James Lee, Rebecca Roberts,[...]. Nat Genet 2010
7

Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine.
Ken Cadwell, Khushbu K Patel, Nicole S Maloney, Ta-Chiang Liu, Aylwin C Y Ng, Chad E Storer, Richard D Head, Ramnik Xavier, Thaddeus S Stappenbeck, Herbert W Virgin. Cell 2010
632
7

Ustekinumab as Induction and Maintenance Therapy for Crohn's Disease.
Brian G Feagan, William J Sandborn, Christopher Gasink, Douglas Jacobstein, Yinghua Lang, Joshua R Friedman, Marion A Blank, Jewel Johanns, Long-Long Gao, Ye Miao,[...]. N Engl J Med 2016
821
7

Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease.
Manuel A Rivas, Mélissa Beaudoin, Agnes Gardet, Christine Stevens, Yashoda Sharma, Clarence K Zhang, Gabrielle Boucher, Stephan Ripke, David Ellinghaus, Noel Burtt,[...]. Nat Genet 2011
527
7

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells.
Yukihiro Furusawa, Yuuki Obata, Shinji Fukuda, Takaho A Endo, Gaku Nakato, Daisuke Takahashi, Yumiko Nakanishi, Chikako Uetake, Keiko Kato, Tamotsu Kato,[...]. Nature 2013
7

Nod2-dependent regulation of innate and adaptive immunity in the intestinal tract.
Koichi S Kobayashi, Mathias Chamaillard, Yasunori Ogura, Octavian Henegariu, Naohiro Inohara, Gabriel Nuñez, Richard A Flavell. Science 2005
7

Inflammatory bowel disease and mutations affecting the interleukin-10 receptor.
Erik-Oliver Glocker, Daniel Kotlarz, Kaan Boztug, E Michael Gertz, Alejandro A Schäffer, Fatih Noyan, Mario Perro, Jana Diestelhorst, Anna Allroth, Dhaarini Murugan,[...]. N Engl J Med 2009
934
7

Nod2 is required for the regulation of commensal microbiota in the intestine.
Tanja Petnicki-Ocwieja, Tomas Hrncir, Yuen-Joyce Liu, Amlan Biswas, Tomas Hudcovic, Helena Tlaskalova-Hogenova, Koichi S Kobayashi. Proc Natl Acad Sci U S A 2009
403
7

The diagnostic approach to monogenic very early onset inflammatory bowel disease.
Holm H Uhlig, Tobias Schwerd, Sibylle Koletzko, Neil Shah, Jochen Kammermeier, Abdul Elkadri, Jodie Ouahed, David C Wilson, Simon P Travis, Dan Turner,[...]. Gastroenterology 2014
352
7

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.
Jason Lloyd-Price, Cesar Arze, Ashwin N Ananthakrishnan, Melanie Schirmer, Julian Avila-Pacheco, Tiffany W Poon, Elizabeth Andrews, Nadim J Ajami, Kevin S Bonham, Colin J Brislawn,[...]. Nature 2019
711
7

ECCO Guidelines on Therapeutics in Crohn's Disease: Medical Treatment.
Joana Torres, Stefanos Bonovas, Glen Doherty, Torsten Kucharzik, Javier P Gisbert, Tim Raine, Michel Adamina, Alessandro Armuzzi, Oliver Bachmann, Palle Bager,[...]. J Crohns Colitis 2020
297
7

Single-Cell Analysis of Crohn's Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy.
Jerome C Martin, Christie Chang, Gilles Boschetti, Ryan Ungaro, Mamta Giri, John A Grout, Kyle Gettler, Ling-Shiang Chuang, Shikha Nayar, Alexander J Greenstein,[...]. Cell 2019
208
7

RICK/Rip2/CARDIAK mediates signalling for receptors of the innate and adaptive immune systems.
Koichi Kobayashi, Naohiro Inohara, Lorraine D Hernandez, Jorge E Galán, Gabriel Núñez, Charles A Janeway, Ruslan Medzhitov, Richard A Flavell. Nature 2002
702
6

Endosomes are specialized platforms for bacterial sensing and NOD2 signalling.
Norihiro Nakamura, Jennie R Lill, Qui Phung, Zhaoshi Jiang, Corey Bakalarski, Ann de Mazière, Judith Klumperman, Megan Schlatter, Lélia Delamarre, Ira Mellman. Nature 2014
175
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.