A citation-based method for searching scientific literature


List of co-cited articles
874 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genomic analysis of mouse retinal development.
Seth Blackshaw, Sanjiv Harpavat, Jeff Trimarchi, Li Cai, Haiyan Huang, Winston P Kuo, Griffin Weber, Kyungjoon Lee, Rebecca E Fraioli, Seo-Hee Cho,[...]. PLoS Biol 2004
437
33

Nrl is required for rod photoreceptor development.
A J Mears, M Kondo, P K Swain, Y Takada, R A Bush, T L Saunders, P A Sieving, A Swaroop. Nat Genet 2001
655
32

Retinopathy and attenuated circadian entrainment in Crx-deficient mice.
T Furukawa, E M Morrow, T Li, F C Davis, C L Cepko. Nat Genet 1999
406
29


Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes.
S Chen, Q L Wang, Z Nie, H Sun, G Lennon, N G Copeland, D J Gilbert, N A Jenkins, D J Zack. Neuron 1997
536
22

Microarray analysis of the transcriptional network controlled by the photoreceptor homeobox gene Crx.
F J Livesey, T Furukawa, M A Steffen, G M Church, C L Cepko. Curr Biol 2000
217
22

The cis-regulatory logic of the mammalian photoreceptor transcriptional network.
Timothy H-C Hsiau, Claudiu Diaconu, Connie A Myers, Jongwoo Lee, Constance L Cepko, Joseph C Corbo. PLoS One 2007
106
21

Otx2 homeobox gene controls retinal photoreceptor cell fate and pineal gland development.
Akihiro Nishida, Akiko Furukawa, Chieko Koike, Yasuo Tano, Shinichi Aizawa, Isao Matsuo, Takahisa Furukawa. Nat Neurosci 2003
400
20

CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors.
Joseph C Corbo, Karen A Lawrence, Marcus Karlstetter, Connie A Myers, Musa Abdelaziz, William Dirkes, Karin Weigelt, Martin Seifert, Vladimir Benes, Lars G Fritsche,[...]. Genome Res 2010
124
17

Expression profiling of the developing and mature Nrl-/- mouse retina: identification of retinal disease candidates and transcriptional regulatory targets of Nrl.
Shigeo Yoshida, Alan J Mears, James S Friedman, Todd Carter, Shirley He, Edwin Oh, Yuezhou Jing, Rafal Farjo, Gilles Fleury, Carrolee Barlow,[...]. Hum Mol Genet 2004
129
16


Cone-rod dystrophy due to mutations in a novel photoreceptor-specific homeobox gene (CRX) essential for maintenance of the photoreceptor.
C L Freund, C Y Gregory-Evans, T Furukawa, M Papaioannou, J Looser, L Ploder, J Bellingham, D Ng, J A Herbrick, A Duncan,[...]. Cell 1997
434
14

The transcriptome of retinal Müller glial cells.
Karin Roesch, Ashutosh P Jadhav, Jeffrey M Trimarchi, Michael B Stadler, Botond Roska, Ben B Sun, Constance L Cepko. J Comp Neurol 2008
244
14

A typology of photoreceptor gene expression patterns in the mouse.
Joseph C Corbo, Connie A Myers, Karen A Lawrence, Ashutosh P Jadhav, Constance L Cepko. Proc Natl Acad Sci U S A 2007
77
18


Targeting of GFP to newborn rods by Nrl promoter and temporal expression profiling of flow-sorted photoreceptors.
Masayuki Akimoto, Hong Cheng, Dongxiao Zhu, Joseph A Brzezinski, Ritu Khanna, Elena Filippova, Edwin C T Oh, Yuezhou Jing, Jose-Luis Linares, Matthew Brooks,[...]. Proc Natl Acad Sci U S A 2006
227
13

Mutation of a nuclear receptor gene, NR2E3, causes enhanced S cone syndrome, a disorder of retinal cell fate.
N B Haider, S G Jacobson, A V Cideciyan, R Swiderski, L M Streb, C Searby, G Beck, R Hockey, D B Hanna, S Gorman,[...]. Nat Genet 2000
341
13



Transcriptional regulation of rod photoreceptor homeostasis revealed by in vivo NRL targetome analysis.
Hong Hao, Douglas S Kim, Bernward Klocke, Kory R Johnson, Kairong Cui, Norimoto Gotoh, Chongzhi Zang, Janina Gregorski, Linn Gieser, Weiqun Peng,[...]. PLoS Genet 2012
72
16

A thyroid hormone receptor that is required for the development of green cone photoreceptors.
L Ng, J B Hurley, B Dierks, M Srinivas, C Saltó, B Vennström, T A Reh, D Forrest. Nat Genet 2001
381
11

Electroporation and RNA interference in the rodent retina in vivo and in vitro.
Takahiko Matsuda, Constance L Cepko. Proc Natl Acad Sci U S A 2004
715
11




Functional roles of Otx2 transcription factor in postnatal mouse retinal development.
Chieko Koike, Akihiro Nishida, Shinji Ueno, Hiromitsu Saito, Rikako Sanuki, Shigeru Sato, Akiko Furukawa, Shinichi Aizawa, Isao Matsuo, Noboru Suzuki,[...]. Mol Cell Biol 2007
126
10

Mapping and quantifying mammalian transcriptomes by RNA-Seq.
Ali Mortazavi, Brian A Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold. Nat Methods 2008
10

Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina.
Anand Swaroop, Douglas Kim, Douglas Forrest. Nat Rev Neurosci 2010
322
10

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
10

De novo mutations in the CRX homeobox gene associated with Leber congenital amaurosis.
C L Freund, Q L Wang, S Chen, B L Muskat, C D Wiles, V C Sheffield, S G Jacobson, R R McInnes, D J Zack, E M Stone. Nat Genet 1998
233
9

Photoreceptor-specific nuclear receptor NR2E3 functions as a transcriptional activator in rod photoreceptors.
Hong Cheng, Hemant Khanna, Edwin C T Oh, David Hicks, Kenneth P Mitton, Anand Swaroop. Hum Mol Genet 2004
176
9

Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution.
Irina Solovei, Moritz Kreysing, Christian Lanctôt, Süleyman Kösem, Leo Peichl, Thomas Cremer, Jochen Guck, Boris Joffe. Cell 2009
446
9

Cone-like morphological, molecular, and electrophysiological features of the photoreceptors of the Nrl knockout mouse.
Lauren L Daniele, Concepcion Lillo, Arkady L Lyubarsky, Sergei S Nikonov, Nancy Philp, Alan J Mears, Anand Swaroop, David S Williams, Edward N Pugh. Invest Ophthalmol Vis Sci 2005
160
8

A range of clinical phenotypes associated with mutations in CRX, a photoreceptor transcription-factor gene.
M M Sohocki, L S Sullivan, H A Mintz-Hittner, D Birch, J R Heckenlively, C L Freund, R R McInnes, S P Daiger. Am J Hum Genet 1998
203
8

Cell fate determination in the vertebrate retina.
C L Cepko, C P Austin, X Yang, M Alexiades, D Ezzeddine. Proc Natl Acad Sci U S A 1996
747
8

Individual retinal progenitor cells display extensive heterogeneity of gene expression.
Jeffrey M Trimarchi, Michael B Stadler, Constance L Cepko. PLoS One 2008
119
8

Molecular heterogeneity of developing retinal ganglion and amacrine cells revealed through single cell gene expression profiling.
Jeffrey M Trimarchi, Michael B Stadler, Botond Roska, Nathan Billings, Ben Sun, Brandon Bartch, Constance L Cepko. J Comp Neurol 2007
122
8

Math5 is required for retinal ganglion cell and optic nerve formation.
N L Brown, S Patel, J Brzezinski, T Glaser. Development 2001
363
8

Transcriptional code and disease map for adult retinal cell types.
Sandra Siegert, Erik Cabuy, Brigitte Gross Scherf, Hubertus Kohler, Satchidananda Panda, Yun-Zheng Le, Hans Jörg Fehling, Dimos Gaidatzis, Michael B Stadler, Botond Roska. Nat Neurosci 2012
174
8


A conserved retina-specific gene encodes a basic motif/leucine zipper domain.
A Swaroop, J Z Xu, H Pawar, A Jackson, C Skolnick, N Agarwal. Proc Natl Acad Sci U S A 1992
268
7

Retinoid X receptor (gamma) is necessary to establish the S-opsin gradient in cone photoreceptors of the developing mouse retina.
Melanie R Roberts, Anita Hendrickson, Christopher R McGuire, Thomas A Reh. Invest Ophthalmol Vis Sci 2005
147
7

Ocular retardation mouse caused by Chx10 homeobox null allele: impaired retinal progenitor proliferation and bipolar cell differentiation.
M Burmeister, J Novak, M Y Liang, S Basu, L Ploder, N L Hawes, D Vidgen, F Hoover, D Goldman, V I Kalnins,[...]. Nat Genet 1996
407
7

Identification of novel genes preferentially expressed in the retina using a custom human retina cDNA microarray.
Itay Chowers, Tushara L Gunatilaka, Ronald H Farkas, Jiang Qian, Abigail S Hackam, Elia Duh, Masaaki Kageyama, Chenwei Wang, Amit Vora, Peter A Campochiaro,[...]. Invest Ophthalmol Vis Sci 2003
55
12

Retinoid-related orphan nuclear receptor RORbeta is an early-acting factor in rod photoreceptor development.
Li Jia, Edwin C T Oh, Lily Ng, Maya Srinivas, Matthew Brooks, Anand Swaroop, Douglas Forrest. Proc Natl Acad Sci U S A 2009
90
7

Pax6 is required for the multipotent state of retinal progenitor cells.
T Marquardt, R Ashery-Padan, N Andrejewski, R Scardigli, F Guillemot, P Gruss. Cell 2001
662
7

Global gene expression analysis of the developing postnatal mouse retina.
Michael I Dorrell, Edith Aguilar, Christoph Weber, Martin Friedlander. Invest Ophthalmol Vis Sci 2004
71
9

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
Cole Trapnell, Brian A Williams, Geo Pertea, Ali Mortazavi, Gordon Kwan, Marijke J van Baren, Steven L Salzberg, Barbara J Wold, Lior Pachter. Nat Biotechnol 2010
7

Analysis of transcriptional regulatory pathways of photoreceptor genes by expression profiling of the Otx2-deficient retina.
Yoshihiro Omori, Kimiko Katoh, Shigeru Sato, Yuki Muranishi, Taro Chaya, Akishi Onishi, Takashi Minami, Takashi Fujikado, Takahisa Furukawa. PLoS One 2011
48
14

Functional analysis of cone-rod homeobox (CRX) mutations associated with retinal dystrophy.
Shiming Chen, Qing-Liang Wang, Siqun Xu, Ivy Liu, Lili Y Li, Yufang Wang, Donald J Zack. Hum Mol Genet 2002
52
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.