A citation-based method for searching scientific literature

Mark A Batzer, Prescott L Deininger. Nat Rev Genet 2002
Times Cited: 918







List of co-cited articles
673 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
36

Alu elements: know the SINEs.
Prescott Deininger. Genome Biol 2011
282
20

Alu repeats and human disease.
P L Deininger, M A Batzer. Mol Genet Metab 1999
630
16

The impact of retrotransposons on human genome evolution.
Richard Cordaux, Mark A Batzer. Nat Rev Genet 2009
936
13

Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project.
Miriam K Konkel, Jerilyn A Walker, Ashley B Hotard, Megan C Ranck, Catherine C Fontenot, Jessica Storer, Chip Stewart, Gabor T Marth, Mark A Batzer. Genome Biol Evol 2015
40
30

Repetitive elements may comprise over two-thirds of the human genome.
A P Jason de Koning, Wanjun Gu, Todd A Castoe, Mark A Batzer, David D Pollock. PLoS Genet 2011
585
12

Active Alu retrotransposons in the human genome.
E Andrew Bennett, Heiko Keller, Ryan E Mills, Steffen Schmidt, John V Moran, Oliver Weichenrieder, Scott E Devine. Genome Res 2008
164
10

An integrated map of structural variation in 2,504 human genomes.
Peter H Sudmant, Tobias Rausch, Eugene J Gardner, Robert E Handsaker, Alexej Abyzov, John Huddleston, Yan Zhang, Kai Ye, Goo Jun, Markus Hsi-Yang Fritz,[...]. Nature 2015
966
10

LINE-mediated retrotransposition of marked Alu sequences.
Marie Dewannieux, Cécile Esnault, Thierry Heidmann. Nat Genet 2003
679
10


Regulatory activities of transposable elements: from conflicts to benefits.
Edward B Chuong, Nels C Elde, Cédric Feschotte. Nat Rev Genet 2017
463
9


Roles for retrotransposon insertions in human disease.
Dustin C Hancks, Haig H Kazazian. Mob DNA 2016
263
9

A comprehensive map of mobile element insertion polymorphisms in humans.
Chip Stewart, Deniz Kural, Michael P Strömberg, Jerilyn A Walker, Miriam K Konkel, Adrian M Stütz, Alexander E Urban, Fabian Grubert, Hugo Y K Lam, Wan-Ping Lee,[...]. PLoS Genet 2011
197
9

Transposable elements in cancer.
Kathleen H Burns. Nat Rev Cancer 2017
166
9

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
8

Mobile DNA in Health and Disease.
Haig H Kazazian, John V Moran. N Engl J Med 2017
134
8

Breaching Self-Tolerance to Alu Duplex RNA Underlies MDA5-Mediated Inflammation.
Sadeem Ahmad, Xin Mu, Fei Yang, Emily Greenwald, Ji Woo Park, Etai Jacob, Cheng-Zhong Zhang, Sun Hur. Cell 2018
149
8


Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome.
Alekos Athanasiadis, Alexander Rich, Stefan Maas. PLoS Biol 2004
486
7

ALUternative Regulation for Gene Expression.
Ling-Ling Chen, Li Yang. Trends Cell Biol 2017
60
11

Standardized nomenclature for Alu repeats.
M A Batzer, P L Deininger, U Hellmann-Blumberg, J Jurka, D Labuda, C M Rubin, C W Schmid, E Zietkiewicz, E Zuckerkandl. J Mol Evol 1996
207
7

A ubiquitous family of repeated DNA sequences in the human genome.
C M Houck, F P Rinehart, C W Schmid. J Mol Biol 1979
356
7

High frequency retrotransposition in cultured mammalian cells.
J V Moran, S E Holmes, T P Naas, R J DeBerardinis, J D Boeke, H H Kazazian. Cell 1996
733
7

Hot L1s account for the bulk of retrotransposition in the human population.
Brook Brouha, Joshua Schustak, Richard M Badge, Sheila Lutz-Prigge, Alexander H Farley, John V Moran, Haig H Kazazian. Proc Natl Acad Sci U S A 2003
649
7

Ten things you should know about transposable elements.
Guillaume Bourque, Kathleen H Burns, Mary Gehring, Vera Gorbunova, Andrei Seluanov, Molly Hammell, Michaël Imbeault, Zsuzsanna Izsvák, Henry L Levin, Todd S Macfarlan,[...]. Genome Biol 2018
221
7

Alu-containing exons are alternatively spliced.
Rotem Sorek, Gil Ast, Dan Graur. Genome Res 2002
360
6

Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome.
Noa Sela, Britta Mersch, Nurit Gal-Mark, Galit Lev-Maor, Agnes Hotz-Wagenblatt, Gil Ast. Genome Biol 2007
163
6

DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration.
Hiroki Kaneko, Sami Dridi, Valeria Tarallo, Bradley D Gelfand, Benjamin J Fowler, Won Gil Cho, Mark E Kleinman, Steven L Ponicsan, William W Hauswirth, Vince A Chiodo,[...]. Nature 2011
400
6

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
6

A fundamental division in the Alu family of repeated sequences.
J Jurka, T Smith. Proc Natl Acad Sci U S A 1988
371
6

Repbase Update, a database of eukaryotic repetitive elements.
J Jurka, V V Kapitonov, A Pavlicek, P Klonowski, O Kohany, J Walichiewicz. Cytogenet Genome Res 2005
6

LINEs and SINEs of primate evolution.
Miriam K Konkel, Jerilyn A Walker, Mark A Batzer. Evol Anthropol 2010
47
12

Evolution of Alu elements toward enhancers.
Ming Su, Dali Han, Jerome Boyd-Kirkup, Xiaoming Yu, Jing-Dong J Han. Cell Rep 2014
70
8

A human-specific subfamily of Alu sequences.
M A Batzer, P L Deininger. Genomics 1991
215
6

Structural variants caused by Alu insertions are associated with risks for many human diseases.
Lindsay M Payer, Jared P Steranka, Wan Rou Yang, Maria Kryatova, Sibyl Medabalimi, Daniel Ardeljan, Chunhong Liu, Jef D Boeke, Dimitri Avramopoulos, Kathleen H Burns. Proc Natl Acad Sci U S A 2017
53
11

Mobile elements create structural variation: analysis of a complete human genome.
Jinchuan Xing, Yuhua Zhang, Kyudong Han, Abdel Halim Salem, Shurjo K Sen, Chad D Huff, Qiong Zhou, Ewen F Kirkness, Samuel Levy, Mark A Batzer,[...]. Genome Res 2009
199
6

Predicting human genes susceptible to genomic instability associated with Alu/Alu-mediated rearrangements.
Xiaofei Song, Christine R Beck, Renqian Du, Ian M Campbell, Zeynep Coban-Akdemir, Shen Gu, Amy M Breman, Pawel Stankiewicz, Grzegorz Ira, Chad A Shaw,[...]. Genome Res 2018
34
17

The age of Alu subfamilies.
V Kapitonov, J Jurka. J Mol Evol 1996
234
5

The intertwining of transposable elements and non-coding RNAs.
Michael Hadjiargyrou, Nicholas Delihas. Int J Mol Sci 2013
63
7

DICER1 loss and Alu RNA induce age-related macular degeneration via the NLRP3 inflammasome and MyD88.
Valeria Tarallo, Yoshio Hirano, Bradley D Gelfand, Sami Dridi, Nagaraj Kerur, Younghee Kim, Won Gil Cho, Hiroki Kaneko, Benjamin J Fowler, Sasha Bogdanovich,[...]. Cell 2012
375
5


A map of human genome variation from population-scale sequencing.
Gonçalo R Abecasis, David Altshuler, Adam Auton, Lisa D Brooks, Richard M Durbin, Richard A Gibbs, Matt E Hurles, Gil A McVean. Nature 2010
5

A-to-I editing of coding and non-coding RNAs by ADARs.
Kazuko Nishikura. Nat Rev Mol Cell Biol 2016
370
5

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
5

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
5

Systematic identification of abundant A-to-I editing sites in the human transcriptome.
Erez Y Levanon, Eli Eisenberg, Rodrigo Yelin, Sergey Nemzer, Martina Hallegger, Ronen Shemesh, Zipora Y Fligelman, Avi Shoshan, Sarah R Pollock, Dan Sztybel,[...]. Nat Biotechnol 2004
562
5


Using Alu elements as polyadenylation sites: A case of retroposon exaptation.
Chongjian Chen, Takeshi Ara, Daniel Gautheret. Mol Biol Evol 2009
55
9

BLAT--the BLAST-like alignment tool.
W James Kent. Genome Res 2002
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.