A citation-based method for searching scientific literature

François Dragon, Jennifer E G Gallagher, Patricia A Compagnone-Post, Brianna M Mitchell, Kara A Porwancher, Karen A Wehner, Steven Wormsley, Robert E Settlage, Jeffrey Shabanowitz, Yvonne Osheim, Ann L Beyer, Donald F Hunt, Susan J Baserga. Nature 2002
Times Cited: 506







List of co-cited articles
1092 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Architecture of the 90S Pre-ribosome: A Structural View on the Birth of the Eukaryotic Ribosome.
Markus Kornprobst, Martin Turk, Nikola Kellner, Jingdong Cheng, Dirk Flemming, Isabelle Koš-Braun, Martin Koš, Matthias Thoms, Otto Berninghausen, Roland Beckmann,[...]. Cell 2016
109
56

90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors.
Paola Grandi, Vladimir Rybin, Jochen Bassler, Elisabeth Petfalski, Daniela Strauss, Martina Marzioch, Thorsten Schäfer, Bernhard Kuster, Herbert Tschochner, David Tollervey,[...]. Mol Cell 2002
363
48

Architecture of the yeast small subunit processome.
Malik Chaker-Margot, Jonas Barandun, Mirjam Hunziker, Sebastian Klinge. Science 2017
78
57

Ribosome biogenesis in the yeast Saccharomyces cerevisiae.
John L Woolford, Susan J Baserga. Genetics 2013
408
43

Molecular architecture of the 90S small subunit pre-ribosome.
Qi Sun, Xing Zhu, Jia Qi, Weidong An, Pengfei Lan, Dan Tan, Rongchang Chen, Bing Wang, Sanduo Zheng, Cheng Zhang,[...]. Elife 2017
83
51

Stepwise and dynamic assembly of the earliest precursors of small ribosomal subunits in yeast.
Liman Zhang, Chen Wu, Gaihong Cai, She Chen, Keqiong Ye. Genes Dev 2016
66
59

Stage-specific assembly events of the 6-MDa small-subunit processome initiate eukaryotic ribosome biogenesis.
Malik Chaker-Margot, Mirjam Hunziker, Jonas Barandun, Brian D Dill, Sebastian Klinge. Nat Struct Mol Biol 2015
67
55

The complete structure of the small-subunit processome.
Jonas Barandun, Malik Chaker-Margot, Mirjam Hunziker, Kelly R Molloy, Brian T Chait, Sebastian Klinge. Nat Struct Mol Biol 2017
63
52

The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
696
28

3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage.
Jingdong Cheng, Nikola Kellner, Otto Berninghausen, Ed Hurt, Roland Beckmann. Nat Struct Mol Biol 2017
55
50

The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
Jorge Pérez-Fernández, Angel Román, Javier De Las Rivas, Xosé R Bustelo, Mercedes Dosil. Mol Cell Biol 2007
122
27

Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae.
Yvonne N Osheim, Sarah L French, Kristin M Keck, Erica A Champion, Krasimir Spasov, François Dragon, Susan J Baserga, Ann L Beyer. Mol Cell 2004
189
26


The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes.
Thorsten Schäfer, Daniela Strauss, Elisabeth Petfalski, David Tollervey, Ed Hurt. EMBO J 2003
238
22

An overview of pre-ribosomal RNA processing in eukaryotes.
Anthony K Henras, Célia Plisson-Chastang, Marie-Françoise O'Donohue, Anirban Chakraborty, Pierre-Emmanuel Gleizes. Wiley Interdiscip Rev RNA 2015
268
22

Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes.
Shan Wu, Beril Tutuncuoglu, Kaige Yan, Hailey Brown, Yixiao Zhang, Dan Tan, Michael Gamalinda, Yi Yuan, Zhifei Li, Jelena Jakovljevic,[...]. Nature 2016
107
22

The Exosome Is Recruited to RNA Substrates through Specific Adaptor Proteins.
Matthias Thoms, Emma Thomson, Jochen Baßler, Marén Gnädig, Sabine Griesel, Ed Hurt. Cell 2015
109
22

UtpA and UtpB chaperone nascent pre-ribosomal RNA and U3 snoRNA to initiate eukaryotic ribosome assembly.
Mirjam Hunziker, Jonas Barandun, Elisabeth Petfalski, Dongyan Tan, Clémentine Delan-Forino, Kelly R Molloy, Kelly H Kim, Hywel Dunn-Davies, Yi Shi, Malik Chaker-Margot,[...]. Nat Commun 2016
33
63

A second base pair interaction between U3 small nucleolar RNA and the 5'-ETS region is required for early cleavage of the yeast pre-ribosomal RNA.
Nathalie Marmier-Gourrier, Antoine Cléry, Florence Schlotter, Véronique Senty-Ségault, Christiane Branlant. Nucleic Acids Res 2011
43
46

RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components.
Jennifer E G Gallagher, David A Dunbar, Sander Granneman, Brianna M Mitchell, Yvonne Osheim, Ann L Beyer, Susan J Baserga. Genes Dev 2004
174
20

PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Paul D Adams, Pavel V Afonine, Gábor Bunkóczi, Vincent B Chen, Ian W Davis, Nathaniel Echols, Jeffrey J Headd, Li-Wei Hung, Gary J Kapral, Ralf W Grosse-Kunstleve,[...]. Acta Crystallogr D Biol Crystallogr 2010
19



Ribosome assembly coming into focus.
Sebastian Klinge, John L Woolford. Nat Rev Mol Cell Biol 2019
117
18

The post-transcriptional steps of eukaryotic ribosome biogenesis.
A K Henras, J Soudet, M Gérus, S Lebaron, M Caizergues-Ferrer, A Mougin, Y Henry. Cell Mol Life Sci 2008
403
17

The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot.
Richa Sardana, Xin Liu, Sander Granneman, Jieyi Zhu, Michael Gill, Ophelia Papoulas, Edward M Marcotte, David Tollervey, Carl C Correll, Arlen W Johnson. PLoS Biol 2015
43
39

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
16

Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.
Jesus de la Cruz, Katrin Karbstein, John L Woolford. Annu Rev Biochem 2015
162
16

The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans.
Graeme R Wells, Franziska Weichmann, David Colvin, Katherine E Sloan, Grzegorz Kudla, David Tollervey, Nicholas J Watkins, Claudia Schneider. Nucleic Acids Res 2016
33
48

Driving ribosome assembly.
Dieter Kressler, Ed Hurt, Jochen Bassler. Biochim Biophys Acta 2010
328
16

High-definition macromolecular composition of yeast RNA-processing complexes.
Nevan J Krogan, Wen-Tao Peng, Gerard Cagney, Mark D Robinson, Robin Haw, Gouqing Zhong, Xinghua Guo, Xin Zhang, Veronica Canadien, Dawn P Richards,[...]. Mol Cell 2004
290
16

Elucidation of the assembly events required for the recruitment of Utp20, Imp4 and Bms1 onto nascent pre-ribosomes.
Jorge Pérez-Fernández, Pilar Martín-Marcos, Mercedes Dosil. Nucleic Acids Res 2011
41
39

Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export.
Yoshitaka Matsuo, Sander Granneman, Matthias Thoms, Rizos-Georgios Manikas, David Tollervey, Ed Hurt. Nature 2014
90
16

60S ribosome biogenesis requires rotation of the 5S ribonucleoprotein particle.
Christoph Leidig, Matthias Thoms, Iris Holdermann, Bettina Bradatsch, Otto Berninghausen, Gert Bange, Irmgard Sinning, Ed Hurt, Roland Beckmann. Nat Commun 2014
87
17

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae.
M S Longtine, A McKenzie, D J Demarini, N G Shah, A Wach, A Brachat, P Philippsen, J R Pringle. Yeast 1998
15

The economics of ribosome biosynthesis in yeast.
J R Warner. Trends Biochem Sci 1999
15

Insertion of the Biogenesis Factor Rei1 Probes the Ribosomal Tunnel during 60S Maturation.
Basil Johannes Greber, Stefan Gerhardy, Alexander Leitner, Marc Leibundgut, Michèle Salem, Daniel Boehringer, Nicolas Leulliot, Ruedi Aebersold, Vikram Govind Panse, Nenad Ban. Cell 2016
63
23

The small subunit processome in ribosome biogenesis—progress and prospects.
Kathleen R Phipps, J Michael Charette, Susan J Baserga. Wiley Interdiscip Rev RNA 2011
119
15

Assembly and structure of the SSU processome-a nucleolar precursor of the small ribosomal subunit.
Jonas Barandun, Mirjam Hunziker, Sebastian Klinge. Curr Opin Struct Biol 2018
35
42

Chaperoning 5S RNA assembly.
Clément Madru, Simon Lebaron, Magali Blaud, Lila Delbos, Juliana Pipoli, Eric Pasmant, Stéphane Réty, Nicolas Leulliot. Genes Dev 2015
35
40

Ribosome assembly factors prevent premature translation initiation by 40S assembly intermediates.
Bethany S Strunk, Cherisse R Loucks, Min Su, Harish Vashisth, Shanshan Cheng, Justin Schilling, Charles L Brooks, Katrin Karbstein, Georgios Skiniotis. Science 2011
153
14

Stepwise assembly of the earliest precursors of large ribosomal subunits in yeast.
Wu Chen, Zhensheng Xie, Fuquan Yang, Keqiong Ye. Nucleic Acids Res 2017
31
45

Pre-40S ribosome biogenesis factor Tsr1 is an inactive structural mimic of translational GTPases.
Urszula M McCaughan, Uma Jayachandran, Vadim Shchepachev, Zhuo Angel Chen, Juri Rappsilber, David Tollervey, Atlanta G Cook. Nat Commun 2016
24
54


Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits.
Simon Lebaron, Claudia Schneider, Robert W van Nues, Agata Swiatkowska, Dietrich Walsh, Bettina Böttcher, Sander Granneman, Nicholas J Watkins, David Tollervey. Nat Struct Mol Biol 2012
121
13


Hrr25-dependent phosphorylation state regulates organization of the pre-40S subunit.
Thorsten Schäfer, Bohumil Maco, Elisabeth Petfalski, David Tollervey, Bettina Böttcher, Ueli Aebi, Ed Hurt. Nature 2006
160
13

A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits.
Bethany S Strunk, Megan N Novak, Crystal L Young, Katrin Karbstein. Cell 2012
169
13

Structural Heterogeneity in Pre-40S Ribosomes.
Matthew C Johnson, Homa Ghalei, Katelyn A Doxtader, Katrin Karbstein, M Elizabeth Stroupe. Structure 2017
37
35

Utp14 Recruits and Activates the RNA Helicase Dhr1 To Undock U3 snoRNA from the Preribosome.
Jieyi Zhu, Xin Liu, Margarida Anjos, Carl C Correll, Arlen W Johnson. Mol Cell Biol 2016
28
46


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.