A citation-based method for searching scientific literature


List of co-cited articles
413 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


From wild animals to domestic pets, an evolutionary view of domestication.
Carlos A Driscoll, David W Macdonald, Stephen J O'Brien. Proc Natl Acad Sci U S A 2009
178
13

The variant call format and VCFtools.
Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A Albers, Eric Banks, Mark A DePristo, Robert E Handsaker, Gerton Lunter, Gabor T Marth, Stephen T Sherry,[...]. Bioinformatics 2011
9

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
9

Evolution of crop species: genetics of domestication and diversification.
Rachel S Meyer, Michael D Purugganan. Nat Rev Genet 2013
445
8


The molecular genetics of crop domestication.
John F Doebley, Brandon S Gaut, Bruce D Smith. Cell 2006
919
7




Core questions in domestication research.
Melinda A Zeder. Proc Natl Acad Sci U S A 2015
109
6


Current perspectives and the future of domestication studies.
Greger Larson, Dolores R Piperno, Robin G Allaby, Michael D Purugganan, Leif Andersson, Manuel Arroyo-Kalin, Loukas Barton, Cynthia Climer Vigueira, Tim Denham, Keith Dobney,[...]. Proc Natl Acad Sci U S A 2014
215
6

Crop domestication and its impact on naturally selected trophic interactions.
Yolanda H Chen, Rieta Gols, Betty Benrey. Annu Rev Entomol 2015
132
5


Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
5



PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
5

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters.
Hákon Jónsson, Aurélien Ginolhac, Mikkel Schubert, Philip L F Johnson, Ludovic Orlando. Bioinformatics 2013
576
5

The nature of selection during plant domestication.
Michael D Purugganan, Dorian Q Fuller. Nature 2009
373
5


Impacts of genetic bottlenecks on soybean genome diversity.
David L Hyten, Qijian Song, Youlin Zhu, Ik-Young Choi, Randall L Nelson, Jose M Costa, James E Specht, Randy C Shoemaker, Perry B Cregan. Proc Natl Acad Sci U S A 2006
302
4

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
4

A map of recent positive selection in the human genome.
Benjamin F Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K Pritchard. PLoS Biol 2006
4




Fast model-based estimation of ancestry in unrelated individuals.
David H Alexander, John Novembre, Kenneth Lange. Genome Res 2009
4

A population genetics view of animal domestication.
Greger Larson, Joachim Burger. Trends Genet 2013
110
4

A framework for variation discovery and genotyping using next-generation DNA sequencing data.
Mark A DePristo, Eric Banks, Ryan Poplin, Kiran V Garimella, Jared R Maguire, Christopher Hartl, Anthony A Philippakis, Guillermo del Angel, Manuel A Rivas, Matt Hanna,[...]. Nat Genet 2011
4

BEAST 2: a software platform for Bayesian evolutionary analysis.
Remco Bouckaert, Joseph Heled, Denise Kühnert, Tim Vaughan, Chieh-Hsi Wu, Dong Xie, Marc A Suchard, Andrew Rambaut, Alexei J Drummond. PLoS Comput Biol 2014
4

Animal evolution during domestication: the domesticated fox as a model.
Lyudmila Trut, Irina Oskina, Anastasiya Kharlamova. Bioessays 2009
223
3

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Ben Langmead, Cole Trapnell, Mihai Pop, Steven L Salzberg. Genome Biol 2009
3

Rapid SNP discovery and genetic mapping using sequenced RAD markers.
Nathan A Baird, Paul D Etter, Tressa S Atwood, Mark C Currey, Anthony L Shiver, Zachary A Lewis, Eric U Selker, William A Cresko, Eric A Johnson. PLoS One 2008
3

Identification of quantitative genetic components of fitness variation in farmed, hybrid and native salmon in the wild.
F Besnier, K A Glover, S Lien, M Kent, M M Hansen, X Shen, Ø Skaala. Heredity (Edinb) 2015
28
10


Molecular basis of a shattering resistance boosting global dissemination of soybean.
Hideyuki Funatsuki, Masaya Suzuki, Aya Hirose, Hiroki Inaba, Tetsuya Yamada, Makita Hajika, Kunihiko Komatsu, Takeshi Katayama, Takashi Sayama, Masao Ishimoto,[...]. Proc Natl Acad Sci U S A 2014
74
4

Detection of human adaptation during the past 2000 years.
Yair Field, Evan A Boyle, Natalie Telis, Ziyue Gao, Kyle J Gaulton, David Golan, Loic Yengo, Ghislain Rocheleau, Philippe Froguel, Mark I McCarthy,[...]. Science 2016
185
3

Genome-wide patterns of selection in 230 ancient Eurasians.
Iain Mathieson, Iosif Lazaridis, Nadin Rohland, Swapan Mallick, Nick Patterson, Songül Alpaslan Roodenberg, Eadaoin Harney, Kristin Stewardson, Daniel Fernandes, Mario Novak,[...]. Nature 2015
550
3


Signals of recent positive selection in a worldwide sample of human populations.
Joseph K Pickrell, Graham Coop, John Novembre, Sridhar Kudaravalli, Jun Z Li, Devin Absher, Balaji S Srinivasan, Gregory S Barsh, Richard M Myers, Marcus W Feldman,[...]. Genome Res 2009
513
3

Detecting recent positive selection in the human genome from haplotype structure.
Pardis C Sabeti, David E Reich, John M Higgins, Haninah Z P Levine, Daniel J Richter, Stephen F Schaffner, Stacey B Gabriel, Jill V Platko, Nick J Patterson, Gavin J McDonald,[...]. Nature 2002
3

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
3

Plant domestication versus crop evolution: a conceptual framework for cereals and grain legumes.
Shahal Abbo, Ruth Pinhasi van-Oss, Avi Gopher, Yehoshua Saranga, Itai Ofner, Zvi Peleg. Trends Plant Sci 2014
108
3


The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
3

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean.
Zhengkui Zhou, Yu Jiang, Zheng Wang, Zhiheng Gou, Jun Lyu, Weiyu Li, Yanjun Yu, Liping Shu, Yingjun Zhao, Yanming Ma,[...]. Nat Biotechnol 2015
499
3

A map of rice genome variation reveals the origin of cultivated rice.
Xuehui Huang, Nori Kurata, Xinghua Wei, Zi-Xuan Wang, Ahong Wang, Qiang Zhao, Yan Zhao, Kunyan Liu, Hengyun Lu, Wenjun Li,[...]. Nature 2012
789
3

NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
3

Morphological and genetic evidence for early Holocene cattle management in northeastern China.
Hucai Zhang, Johanna L A Paijmans, Fengqin Chang, Xiaohong Wu, Guangjie Chen, Chuzhao Lei, Xiujuan Yang, Zhenyi Wei, Daniel G Bradley, Ludovic Orlando,[...]. Nat Commun 2013
36
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.