A citation-based method for searching scientific literature

Jo Vandesompele, Katleen De Preter, Filip Pattyn, Bruce Poppe, Nadine Van Roy, Anne De Paepe, Frank Speleman. Genome Biol 2002
Times Cited: 12664







List of co-cited articles
133 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity





The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments.
Stephen A Bustin, Vladimir Benes, Jeremy A Garson, Jan Hellemans, Jim Huggett, Mikael Kubista, Reinhold Mueller, Tania Nolan, Michael W Pfaffl, Gregory L Shipley,[...]. Clin Chem 2009
14


Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR.
Nicholas Silver, Steve Best, Jie Jiang, Swee Lay Thein. BMC Mol Biol 2006
828
13

miRDeepFinder: a miRNA analysis tool for deep sequencing of plant small RNAs.
Fuliang Xie, Peng Xiao, Dongliang Chen, Lei Xu, Baohong Zhang. Plant Mol Biol 2012
633
11

Quantitative real-time RT-PCR--a perspective.
S A Bustin, V Benes, T Nolan, M W Pfaffl. J Mol Endocrinol 2005
711
8

Real-time RT-PCR normalisation; strategies and considerations.
J Huggett, K Dheda, S Bustin, A Zumla. Genes Immun 2005
6

Primer3--new capabilities and interfaces.
Andreas Untergasser, Ioana Cutcutache, Triinu Koressaar, Jian Ye, Brant C Faircloth, Maido Remm, Steven G Rozen. Nucleic Acids Res 2012
6

qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data.
Jan Hellemans, Geert Mortier, Anne De Paepe, Frank Speleman, Jo Vandesompele. Genome Biol 2007
6

Reference genes in real-time PCR.
Bartłomiej Kozera, Marcin Rapacz. J Appl Genet 2013
451
5

Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction.
Jian Ye, George Coulouris, Irena Zaretskaya, Ioana Cutcutache, Steve Rozen, Thomas L Madden. BMC Bioinformatics 2012
5

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
5

Housekeeping genes as internal standards: use and limits.
O Thellin, W Zorzi, B Lakaye, B De Borman, B Coumans, G Hennen, T Grisar, A Igout, E Heinen. J Biotechnol 1999
4

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
4

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
4

Exploring valid reference genes for quantitative real-time PCR analysis in Plutella xylostella (Lepidoptera: Plutellidae).
Wei Fu, Wen Xie, Zhuo Zhang, Shaoli Wang, Qingjun Wu, Yong Liu, Xiaomao Zhou, Xuguo Zhou, Youjun Zhang. Int J Biol Sci 2013
107
4

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
4

Reference genes validation in Phenacoccus solenopsis under various biotic and abiotic stress conditions.
Surjeet Kumar Arya, Gourav Jain, Santosh Kumar Upadhyay, Sarita, Harpal Singh, Sameer Dixit, Praveen Chandra Verma. Sci Rep 2017
22
13


Reference gene validation for RT-qPCR, a note on different available software packages.
Ward De Spiegelaere, Jutta Dern-Wieloch, Roswitha Weigel, Valérie Schumacher, Hubert Schorle, Daniel Nettersheim, Martin Bergmann, Ralph Brehm, Sabine Kliesch, Linos Vandekerckhove,[...]. PLoS One 2015
120
3



Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
3

Selection and validation of reference genes for quantitative gene expression studies by real-time PCR in eggplant (Solanum melongena L).
Nagavara Prasad Gantasala, Pradeep Kumar Papolu, Prasoon Kumar Thakur, Divya Kamaraju, Rohini Sreevathsa, Uma Rao. BMC Res Notes 2013
51
5

Selection of reference genes for gene expression studies in rat oligodendrocytes using quantitative real time PCR.
Katherine Nelissen, Karen Smeets, Monique Mulder, Jerome J A Hendriks, Marcel Ameloot. J Neurosci Methods 2010
62
4

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
3

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks.
Gabriela Bindea, Bernhard Mlecnik, Hubert Hackl, Pornpimol Charoentong, Marie Tosolini, Amos Kirilovsky, Wolf-Herman Fridman, Franck Pagès, Zlatko Trajanoski, Jérôme Galon. Bioinformatics 2009
3

The power of real-time PCR.
Mark A Valasek, Joyce J Repa. Adv Physiol Educ 2005
254
3

Quantification of mRNA using real-time RT-PCR.
Tania Nolan, Rebecca E Hands, Stephen A Bustin. Nat Protoc 2006
3

Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis.
Tomasz Czechowski, Mark Stitt, Thomas Altmann, Michael K Udvardi, Wolf-Rüdiger Scheible. Plant Physiol 2005
3






NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
3

How to do successful gene expression analysis using real-time PCR.
Stefaan Derveaux, Jo Vandesompele, Jan Hellemans. Methods 2010
404
3

Evaluation of potential reference genes for reverse transcription-qPCR studies of physiological responses in Drosophila melanogaster.
Fleur Ponton, Marie-Pierre Chapuis, Mathieu Pernice, Gregory A Sword, Stephen J Simpson. J Insect Physiol 2011
192
3

Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Manfred G Grabherr, Brian J Haas, Moran Yassour, Joshua Z Levin, Dawn A Thompson, Ido Amit, Xian Adiconis, Lin Fan, Raktima Raychowdhury, Qiandong Zeng,[...]. Nat Biotechnol 2011
3

Toll-like receptor signalling.
Shizuo Akira, Kiyoshi Takeda. Nat Rev Immunol 2004
2

Kinetic PCR analysis: real-time monitoring of DNA amplification reactions.
R Higuchi, C Fockler, G Dollinger, R Watson. Biotechnology (N Y) 1993
2


Identification of miR-16 as an endogenous reference gene for the normalization of urinary exosomal miRNA expression data from CKD patients.
Tim Lange, Sylvia Stracke, Rainer Rettig, Uwe Lendeckel, Jana Kuhn, Rabea Schlüter, Volkhard Rippe, Karlhans Endlich, Nicole Endlich. PLoS One 2017
45
4


Plant reference genes for development and stress response studies.
Joyous T Joseph, Najya Jabeen Poolakkalody, Jasmine M Shah. J Biosci 2018
22
9

Eleven golden rules of quantitative RT-PCR.
Michael K Udvardi, Tomasz Czechowski, Wolf-Rüdiger Scheible. Plant Cell 2008
393
2

Evaluation of potential reference genes in real-time RT-PCR studies of Atlantic salmon.
Pål A Olsvik, Kai K Lie, Ann-Elise O Jordal, Tom O Nilsen, Ivar Hordvik. BMC Mol Biol 2005
391
2

Innate immunity of fish (overview).
Bergljót Magnadóttir. Fish Shellfish Immunol 2006
901
2


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.