A citation-based method for searching scientific literature

R Milo, S Shen-Orr, S Itzkovitz, N Kashtan, D Chklovskii, U Alon. Science 2002
Times Cited: 2392







List of co-cited articles
368 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Network motifs in the transcriptional regulation network of Escherichia coli.
Shai S Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon. Nat Genet 2002
19

Collective dynamics of 'small-world' networks.
D J Watts, S H Strogatz. Nature 1998
18

Structure and function of the feed-forward loop network motif.
S Mangan, U Alon. Proc Natl Acad Sci U S A 2003
995
17


Network biology: understanding the cell's functional organization.
Albert-László Barabási, Zoltán N Oltvai. Nat Rev Genet 2004
11

Emergence of scaling in random networks
Barabasi, Albert. Science 1999
10

Defining network topologies that can achieve biochemical adaptation.
Wenzhe Ma, Ala Trusina, Hana El-Samad, Wendell A Lim, Chao Tang. Cell 2009
491
9


Superfamilies of evolved and designed networks.
Ron Milo, Shalev Itzkovitz, Nadav Kashtan, Reuven Levitt, Shai Shen-Orr, Inbal Ayzenshtat, Michal Sheffer, Uri Alon. Science 2004
494
8


Construction of a genetic toggle switch in Escherichia coli.
T S Gardner, C R Cantor, J J Collins. Nature 2000
7

Motifs in brain networks.
Olaf Sporns, Rolf Kötter. PLoS Biol 2004
338
7

Network medicine: a network-based approach to human disease.
Albert-László Barabási, Natali Gulbahce, Joseph Loscalzo. Nat Rev Genet 2011
7

Lethality and centrality in protein networks.
H Jeong, S P Mason, A L Barabási, Z N Oltvai. Nature 2001
7

Stochastic gene expression in a single cell.
Michael B Elowitz, Arnold J Levine, Eric D Siggia, Peter S Swain. Science 2002
7


Controllability of complex networks.
Yang-Yu Liu, Jean-Jacques Slotine, Albert-László Barabási. Nature 2011
663
6

Exploring complex networks.
S H Strogatz. Nature 2001
6

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
6

Functional cartography of complex metabolic networks.
Roger Guimerà, Luís A Nunes Amaral. Nature 2005
6

Transcriptional regulatory networks in Saccharomyces cerevisiae.
Tong Ihn Lee, Nicola J Rinaldi, François Robert, Duncan T Odom, Ziv Bar-Joseph, Georg K Gerber, Nancy M Hannett, Christopher T Harbison, Craig M Thompson, Itamar Simon,[...]. Science 2002
6



Robustness in simple biochemical networks.
N Barkai, S Leibler. Nature 1997
854
5

The incoherent feedforward loop can provide fold-change detection in gene regulation.
Lea Goentoro, Oren Shoval, Marc W Kirschner, Uri Alon. Mol Cell 2009
250
5

Wisdom of crowds for robust gene network inference.
Daniel Marbach, James C Costello, Robert Küffner, Nicole M Vega, Robert J Prill, Diogo M Camacho, Kyle R Allison, Manolis Kellis, James J Collins, Gustavo Stolovitzky. Nat Methods 2012
792
5

Inferring regulatory networks from expression data using tree-based methods.
Vân Anh Huynh-Thu, Alexandre Irrthum, Louis Wehenkel, Pierre Geurts. PLoS One 2010
581
5

An excitable gene regulatory circuit induces transient cellular differentiation.
Gürol M Süel, Jordi Garcia-Ojalvo, Louisa M Liberman, Michael B Elowitz. Nature 2006
446
4

Dynamic properties of network motifs contribute to biological network organization.
Robert J Prill, Pablo A Iglesias, Andre Levchenko. PLoS Biol 2005
172
4

Stochasticity and cell fate.
Richard Losick, Claude Desplan. Science 2008
358
4

Core transcriptional regulatory circuitry in human embryonic stem cells.
Laurie A Boyer, Tong Ihn Lee, Megan F Cole, Sarah E Johnstone, Stuart S Levine, Jacob P Zucker, Matthew G Guenther, Roshan M Kumar, Heather L Murray, Richard G Jenner,[...]. Cell 2005
4

Evidence for the existence of a robust pattern of prey selection in food webs.
Daniel B Stouffer, Juan Camacho, Wenxin Jiang, Luís A Nunes Amaral. Proc Biol Sci 2007
68
5


Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems.
David Angeli, James E Ferrell, Eduardo D Sontag. Proc Natl Acad Sci U S A 2004
412
4


The structure of the nervous system of the nematode Caenorhabditis elegans.
J G White, E Southgate, J N Thomson, S Brenner. Philos Trans R Soc Lond B Biol Sci 1986
4

Structural properties of the Caenorhabditis elegans neuronal network.
Lav R Varshney, Beth L Chen, Eric Paniagua, David H Hall, Dmitri B Chklovskii. PLoS Comput Biol 2011
347
4

Whole-animal connectomes of both Caenorhabditis elegans sexes.
Steven J Cook, Travis A Jarrell, Christopher A Brittin, Yi Wang, Adam E Bloniarz, Maksim A Yakovlev, Ken C Q Nguyen, Leo T-H Tang, Emily A Bayer, Janet S Duerr,[...]. Nature 2019
164
4

Scale-free networks in cell biology.
Réka Albert. J Cell Sci 2005
562
4

The large-scale organization of metabolic networks.
H Jeong, B Tombor, R Albert, Z N Oltvai, A L Barabási. Nature 2000
4

Robust perfect adaptation in bacterial chemotaxis through integral feedback control.
T M Yi, Y Huang, M I Simon, J Doyle. Proc Natl Acad Sci U S A 2000
510
4



Error and attack tolerance of complex networks
Albert, Jeong, Barabasi. Nature 2000
4


Design principles of biochemical oscillators.
Béla Novák, John J Tyson. Nat Rev Mol Cell Biol 2008
556
4

Genetic circuit design automation.
Alec A K Nielsen, Bryan S Der, Jonghyeon Shin, Prashant Vaidyanathan, Vanya Paralanov, Elizabeth A Strychalski, David Ross, Douglas Densmore, Christopher A Voigt. Science 2016
433
4

WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
4

Information transduction capacity of noisy biochemical signaling networks.
Raymond Cheong, Alex Rhee, Chiaochun Joanne Wang, Ilya Nemenman, Andre Levchenko. Science 2011
262
4



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.