A citation-based method for searching scientific literature

Long-Cheng Li, Rajvir Dahiya. Bioinformatics 2002
Times Cited: 1762







List of co-cited articles
168 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



QUMA: quantification tool for methylation analysis.
Yuichi Kumaki, Masaaki Oda, Masaki Okano. Nucleic Acids Res 2008
398
10



Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
6

DNA methylation and its basic function.
Lisa D Moore, Thuc Le, Guoping Fan. Neuropsychopharmacology 2013
995
5


Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
5

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
5

PROMO: detection of known transcription regulatory elements using species-tailored searches.
Xavier Messeguer, Ruth Escudero, Domènec Farré, Oscar Núñez, Javier Martínez, M Mar Albà. Bioinformatics 2002
808
5

The diverse roles of DNA methylation in mammalian development and disease.
Maxim V C Greenberg, Deborah Bourc'his. Nat Rev Mol Cell Biol 2019
398
5



Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN.
Domènec Farré, Romà Roset, Mario Huerta, José E Adsuara, Llorenç Roselló, M Mar Albà, Xavier Messeguer. Nucleic Acids Res 2003
624
4

The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing.
Yun Huang, William A Pastor, Yinghua Shen, Mamta Tahiliani, David R Liu, Anjana Rao. PLoS One 2010
501
4

The human genome browser at UCSC.
W James Kent, Charles W Sugnet, Terrence S Furey, Krishna M Roskin, Tom H Pringle, Alan M Zahler, David Haussler. Genome Res 2002
4


STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Damian Szklarczyk, Annika L Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T Doncheva, John H Morris, Peer Bork,[...]. Nucleic Acids Res 2019
4

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
4

metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data.
Frank Jühling, Helene Kretzmer, Stephan H Bernhart, Christian Otto, Peter F Stadler, Steve Hoffmann. Genome Res 2016
131
4

NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
3

COBRA: a sensitive and quantitative DNA methylation assay.
Z Xiong, P W Laird. Nucleic Acids Res 1997
928
3

Primer3--new capabilities and interfaces.
Andreas Untergasser, Ioana Cutcutache, Triinu Koressaar, Jian Ye, Brant C Faircloth, Maido Remm, Steven G Rozen. Nucleic Acids Res 2012
3


BiSearch: primer-design and search tool for PCR on bisulfite-treated genomes.
Gábor E Tusnády, István Simon, András Váradi, Tamás Arányi. Nucleic Acids Res 2005
126
3

DNA methyltransferase inhibitors and their emerging role in epigenetic therapy of cancer.
Agnieszka Gnyszka, Zenon Jastrzebski, Sylwia Flis. Anticancer Res 2013
162
3

KEGG: kyoto encyclopedia of genes and genomes.
M Kanehisa, S Goto. Nucleic Acids Res 2000
3

The Molecular Signatures Database (MSigDB) hallmark gene set collection.
Arthur Liberzon, Chet Birger, Helga Thorvaldsdóttir, Mahmoud Ghandi, Jill P Mesirov, Pablo Tamayo. Cell Syst 2015
3

DNA methylation and DNA methyltransferases.
John R Edwards, Olya Yarychkivska, Mathieu Boulard, Timothy H Bestor. Epigenetics Chromatin 2017
159
3


The role of methyl-binding proteins in chromatin organization and epigenome maintenance.
Alexandra Fournier, Nobuhiro Sasai, Mitsuyoshi Nakao, Pierre-Antoine Defossez. Brief Funct Genomics 2012
64
4

BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing.
Christoph Bock, Sabine Reither, Thomas Mikeska, Martina Paulsen, Jörn Walter, Thomas Lengauer. Bioinformatics 2005
482
3

The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.
Ethan Cerami, Jianjiong Gao, Ugur Dogrusoz, Benjamin E Gross, Selcuk Onur Sumer, Bülent Arman Aksoy, Anders Jacobsen, Caitlin J Byrne, Michael L Heuer, Erik Larsson,[...]. Cancer Discov 2012
3

CpG islands and the regulation of transcription.
Aimée M Deaton, Adrian Bird. Genes Dev 2011
3

Genome-wide methylation profiles reveal quantitative views of human aging rates.
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
3

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
3

DNA methylation landscapes: provocative insights from epigenomics.
Miho M Suzuki, Adrian Bird. Nat Rev Genet 2008
3

Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome.
Michael Weber, Ines Hellmann, Michael B Stadler, Liliana Ramos, Svante Pääbo, Michael Rebhan, Dirk Schübeler. Nat Genet 2007
3

Epigenetic reprogramming in mammalian development.
W Reik, W Dean, J Walter. Science 2001
3

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
Mamta Tahiliani, Kian Peng Koh, Yinghua Shen, William A Pastor, Hozefa Bandukwala, Yevgeny Brudno, Suneet Agarwal, Lakshminarayan M Iyer, David R Liu, L Aravind,[...]. Science 2009
3

CpG islands in vertebrate genomes.
M Gardiner-Garden, M Frommer. J Mol Biol 1987
3

DNA methylation and human disease.
Keith D Robertson. Nat Rev Genet 2005
3

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
Ron Edgar, Michael Domrachev, Alex E Lash. Nucleic Acids Res 2002
3


Perinatal depression and DNA methylation of oxytocin-related genes: a study of mothers and their children.
Leonora King, Stephanie Robins, Gang Chen, Volodymyr Yerko, Yi Zhou, Corina Nagy, Nancy Feeley, Ian Gold, Barbara Hayton, Gustavo Turecki,[...]. Horm Behav 2017
31
6


Associations between oxytocin receptor gene (OXTR) methylation, plasma oxytocin, and attachment across adulthood.
Natalie C Ebner, Tian Lin, Melis Muradoglu, Devon H Weir, Gabriela M Plasencia, Travis S Lillard, Hossein Pournajafi-Nazarloo, Ronald A Cohen, C Sue Carter, Jessica J Connelly. Int J Psychophysiol 2019
29
6

Childhood maternal care is associated with DNA methylation of the genes for brain-derived neurotrophic factor (BDNF) and oxytocin receptor (OXTR) in peripheral blood cells in adult men and women.
Eva Unternaehrer, Andrea Hans Meyer, Susan C A Burkhardt, Emma Dempster, Simon Staehli, Nathan Theill, Roselind Lieb, Gunther Meinlschmidt. Stress 2015
95
2

Epigenetic modification of OXT and human sociability.
Brian W Haas, Megan M Filkowski, R Nick Cochran, Lydia Denison, Alexandra Ishak, Shota Nishitani, Alicia K Smith. Proc Natl Acad Sci U S A 2016
52
3

Epigenetics and depression: return of the repressed.
Victoria S Dalton, Erik Kolshus, Declan M McLoughlin. J Affect Disord 2014
69
2


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.