A citation-based method for searching scientific literature

Ming Yao Yang, Mark Bowmaker, Aurelio Reyes, Lodovica Vergani, Paolo Angeli, Enrico Gringeri, Howard T Jacobs, Ian J Holt. Cell 2002
Times Cited: 198







List of co-cited articles
1191 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Replication of vertebrate mitochondrial DNA entails transient ribonucleotide incorporation throughout the lagging strand.
Takehiro Yasukawa, Aurelio Reyes, Tricia J Cluett, Ming-Yao Yang, Mark Bowmaker, Howard T Jacobs, Ian J Holt. EMBO J 2006
151
54


Mammalian mitochondrial DNA replicates bidirectionally from an initiation zone.
Mark Bowmaker, Ming Yao Yang, Takehiro Yasukawa, Aurelio Reyes, Howard T Jacobs, Joel A Huberman, Ian J Holt. J Biol Chem 2003
140
40

Mammalian mitochondrial DNA replication intermediates are essentially duplex but contain extensive tracts of RNA/DNA hybrid.
Jaakko L O Pohjoismäki, J Bradley Holmes, Stuart R Wood, Ming-Yao Yang, Takehiro Yasukawa, Aurelio Reyes, Laura J Bailey, Tricia J Cluett, Steffi Goffart, Smaranda Willcox,[...]. J Mol Biol 2010
85
44

Replication of mitochondrial DNA occurs by strand displacement with alternative light-strand origins, not via a strand-coupled mechanism.
Timothy A Brown, Ciro Cecconi, Ariana N Tkachuk, Carlos Bustamante, David A Clayton. Genes Dev 2005
123
37

A bidirectional origin of replication maps to the major noncoding region of human mitochondrial DNA.
Takehiro Yasukawa, Ming-Yao Yang, Howard T Jacobs, Ian J Holt. Mol Cell 2005
120
35

Mitochondrial RNA polymerase is needed for activation of the origin of light-strand DNA replication.
Javier Miralles Fusté, Sjoerd Wanrooij, Elisabeth Jemt, Caroline E Granycome, Tricia J Cluett, Yonghong Shi, Neli Atanassova, Ian J Holt, Claes M Gustafsson, Maria Falkenberg. Mol Cell 2010
117
34

Reconstitution of a minimal mtDNA replisome in vitro.
Jenny A Korhonen, Xuan Hoi Pham, Mina Pellegrini, Maria Falkenberg. EMBO J 2004
247
26

Mitochondrial DNA replication proceeds via a 'bootlace' mechanism involving the incorporation of processed transcripts.
Aurelio Reyes, Lawrence Kazak, Stuart R Wood, Takehiro Yasukawa, Howard T Jacobs, Ian J Holt. Nucleic Acids Res 2013
69
37

Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
25

Failure to produce mitochondrial DNA results in embryonic lethality in Rnaseh1 null mice.
Susana M Cerritelli, Ella G Frolova, Chiguang Feng, Alexander Grinberg, Paul E Love, Robert J Crouch. Mol Cell 2003
220
25

Human heart mitochondrial DNA is organized in complex catenated networks containing abundant four-way junctions and replication forks.
Jaakko L O Pohjoismäki, Steffi Goffart, Henna Tyynismaa, Smaranda Willcox, Tomomi Ide, Dongchon Kang, Anu Suomalainen, Pekka J Karhunen, Jack D Griffith, Ian J Holt,[...]. J Biol Chem 2009
82
29

Human mitochondrial RNA polymerase primes lagging-strand DNA synthesis in vitro.
Sjoerd Wanrooij, Javier Miralles Fusté, Géraldine Farge, Yonghong Shi, Claes M Gustafsson, Maria Falkenberg. Proc Natl Acad Sci U S A 2008
113
24

Human mitochondrial DNA deletions associated with mutations in the gene encoding Twinkle, a phage T7 gene 4-like protein localized in mitochondria.
J N Spelbrink, F Y Li, V Tiranti, K Nikali, Q P Yuan, M Tariq, S Wanrooij, N Garrido, G Comi, L Morandi,[...]. Nat Genet 2001
601
22

Bidirectional replication initiates at sites throughout the mitochondrial genome of birds.
Aurelio Reyes, Ming Yao Yang, Mark Bowmaker, Ian J Holt. J Biol Chem 2005
61
36

Premature ageing in mice expressing defective mitochondrial DNA polymerase.
Aleksandra Trifunovic, Anna Wredenberg, Maria Falkenberg, Johannes N Spelbrink, Anja T Rovio, Carl E Bruder, Mohammad Bohlooly-Y, Sebastian Gidlöf, Anders Oldfors, Rolf Wibom,[...]. Nature 2004
21

Mitochondrial DNA maintenance in vertebrates.
G S Shadel, D A Clayton. Annu Rev Biochem 1997
693
20

Expression of catalytic mutants of the mtDNA helicase Twinkle and polymerase POLG causes distinct replication stalling phenotypes.
Sjoerd Wanrooij, Steffi Goffart, Jaakko L O Pohjoismäki, Takehiro Yasukawa, Johannes N Spelbrink. Nucleic Acids Res 2007
109
19

Removal of oxidative DNA damage via FEN1-dependent long-patch base excision repair in human cell mitochondria.
Pingfang Liu, Limin Qian, Jung-Suk Sung, Nadja C de Souza-Pinto, Li Zheng, Daniel F Bogenhagen, Vilhelm A Bohr, David M Wilson, Binghui Shen, Bruce Demple. Mol Cell Biol 2008
149
18

The mitochondrial DNA replication bubble has not burst.
Daniel F Bogenhagen, David A Clayton. Trends Biochem Sci 2003
80
22

In vivo occupancy of mitochondrial single-stranded DNA binding protein supports the strand displacement mode of DNA replication.
Javier Miralles Fusté, Yonghong Shi, Sjoerd Wanrooij, Xuefeng Zhu, Elisabeth Jemt, Örjan Persson, Nasim Sabouri, Claes M Gustafsson, Maria Falkenberg. PLoS Genet 2014
76
23

Replication of mitochondrial DNA. Circular replicative intermediates in mouse L cells.
D L Robberson, H Kasamatsu, J Vinograd. Proc Natl Acad Sci U S A 1972
197
17


Super-resolution microscopy reveals that mammalian mitochondrial nucleoids have a uniform size and frequently contain a single copy of mtDNA.
Christian Kukat, Christian A Wurm, Henrik Spåhr, Maria Falkenberg, Nils-Göran Larsson, Stefan Jakobs. Proc Natl Acad Sci U S A 2011
281
16

Human DNA2 is a mitochondrial nuclease/helicase for efficient processing of DNA replication and repair intermediates.
Li Zheng, Mian Zhou, Zhigang Guo, Huiming Lu, Limin Qian, Huifang Dai, Junzhuan Qiu, Elena Yakubovskaya, Daniel F Bogenhagen, Bruce Demple,[...]. Mol Cell 2008
159
15

DNA replication and transcription in mammalian mitochondria.
Maria Falkenberg, Nils-Göran Larsson, Claes M Gustafsson. Annu Rev Biochem 2007
439
15

The mitochondrial transcription termination factor mTERF modulates replication pausing in human mitochondrial DNA.
Anne K Hyvärinen, Jaakko L O Pohjoismäki, Aurelio Reyes, Sjoerd Wanrooij, Takehiro Yasukawa, Pekka J Karhunen, Johannes N Spelbrink, Ian J Holt, Howard T Jacobs. Nucleic Acids Res 2007
81
18

The presence of ribonucleotides in mature closed-circular mitochondrial DNA.
L I Grossman, R Watson, J Vinograd. Proc Natl Acad Sci U S A 1973
91
16

The AAA+ protein ATAD3 has displacement loop binding properties and is involved in mitochondrial nucleoid organization.
Jiuya He, Chih-Chieh Mao, Aurelio Reyes, Hiroshi Sembongi, Miriam Di Re, Caroline Granycome, Andrew B Clippingdale, Ian M Fearnley, Michael Harbour, Alan J Robinson,[...]. J Cell Biol 2007
151
15

Alterations to the expression level of mitochondrial transcription factor A, TFAM, modify the mode of mitochondrial DNA replication in cultured human cells.
Jaakko L O Pohjoismäki, Sjoerd Wanrooij, Anne K Hyvärinen, Steffi Goffart, Ian J Holt, Johannes N Spelbrink, Howard T Jacobs. Nucleic Acids Res 2006
112
14

Conserved sequence box II directs transcription termination and primer formation in mitochondria.
Xuan Hoi Pham, Géraldine Farge, Yonghong Shi, Martina Gaspari, Claes M Gustafsson, Maria Falkenberg. J Biol Chem 2006
89
15


The accessory subunit of mitochondrial DNA polymerase gamma determines the DNA content of mitochondrial nucleoids in human cultured cells.
M Di Re, H Sembongi, J He, A Reyes, T Yasukawa, P Martinsson, L J Bailey, S Goffart, J D Boyd-Kirkup, T S Wong,[...]. Nucleic Acids Res 2009
59
22




Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases.
Stephanie A Nick McElhinny, Brian E Watts, Dinesh Kumar, Danielle L Watt, Else-Britt Lundström, Peter M J Burgers, Erik Johansson, Andrei Chabes, Thomas A Kunkel. Proc Natl Acad Sci U S A 2010
282
13

PrimPol, an archaic primase/polymerase operating in human cells.
Sara García-Gómez, Aurelio Reyes, María I Martínez-Jiménez, E Sandra Chocrón, Silvana Mourón, Gloria Terrados, Christopher Powell, Eduardo Salido, Juan Méndez, Ian J Holt,[...]. Mol Cell 2013
212
13

Human mitochondrial DNA replication.
Ian J Holt, Aurelio Reyes. Cold Spring Harb Perspect Biol 2012
89
14

Primer retention owing to the absence of RNase H1 is catastrophic for mitochondrial DNA replication.
J Bradley Holmes, Gokhan Akman, Stuart R Wood, Kiran Sakhuja, Susana M Cerritelli, Chloe Moss, Mark R Bowmaker, Howard T Jacobs, Robert J Crouch, Ian J Holt. Proc Natl Acad Sci U S A 2015
49
26

DNA polymerase gamma, the mitochondrial replicase.
Laurie S Kaguni. Annu Rev Biochem 2004
287
12

Mutation of POLG is associated with progressive external ophthalmoplegia characterized by mtDNA deletions.
G Van Goethem, B Dermaut, A Löfgren, J J Martin, C Van Broeckhoven. Nat Genet 2001
571
12



The layered structure of human mitochondrial DNA nucleoids.
Daniel F Bogenhagen, Denis Rousseau, Stephanie Burke. J Biol Chem 2008
293
12

Twinkle mutations associated with autosomal dominant progressive external ophthalmoplegia lead to impaired helicase function and in vivo mtDNA replication stalling.
Steffi Goffart, Helen M Cooper, Henna Tyynismaa, Sjoerd Wanrooij, Anu Suomalainen, Johannes N Spelbrink. Hum Mol Genet 2009
89
13

Human Dna2 is a nuclear and mitochondrial DNA maintenance protein.
Julien P Duxin, Benjamin Dao, Peter Martinsson, Nina Rajala, Lionel Guittat, Judith L Campbell, Johannes N Spelbrink, Sheila A Stewart. Mol Cell Biol 2009
138
12

What causes mitochondrial DNA deletions in human cells?
Kim J Krishnan, Amy K Reeve, David C Samuels, Patrick F Chinnery, John K Blackwood, Robert W Taylor, Sjoerd Wanrooij, Johannes N Spelbrink, Robert N Lightowlers, Doug M Turnbull. Nat Genet 2008
268
12



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.