CoCites: A citation-based method for searching scientific literature

The residue immediately upstream of the RNase P cleavage site is a positive determinant.

Mathias Brännvall, B M Fredrik Pettersson, Leif A Kirsebom. Biochimie 2002
Times Cited: 36

List of co-cited articles
308 articles co-cited >1

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The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.
C Guerrier-Takada, K Gardiner, T Marsh, N Pace, S Altman. Cell 1983

1786

Recognition of the 5' leader of pre-tRNA substrates by the active site of ribonuclease P.
Nathan H Zahler, Eric L Christian, Michael E Harris. RNA 2003

Base pairing between Escherichia coli RNase P RNA and its substrate.
L A Kirsebom, S G Svärd. EMBO J 1994

185

Importance of the +73/294 interaction in Escherichia coli RNase P RNA substrate complexes for cleavage and metal ion coordination.
Mathias Brännvall, B M Fredrik Pettersson, Leif A Kirsebom. J Mol Biol 2003

The protein component of Bacillus subtilis ribonuclease P increases catalytic efficiency by enhancing interactions with the 5' leader sequence of pre-tRNAAsp.
S M Crary, S Niranjanakumari, C A Fierke. Biochemistry 1998

109

Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNA.
S Niranjanakumari, T Stams, S M Crary, D W Christianson, C A Fierke. Proc Natl Acad Sci U S A 1998

140

Recognition of the 5' leader and the acceptor stem of a pre-tRNA substrate by the ribozyme from Bacillus subtilis RNase P.
A Loria, T Pan. Biochemistry 1998

Multiple magnesium ions in the ribonuclease P reaction mechanism.
D Smith, N R Pace. Biochemistry 1993

206

The pre-tRNA nucleotide base and 2'-hydroxyl at N(-1) contribute to fidelity in tRNA processing by RNase P.
Nathan H Zahler, Lei Sun, Eric L Christian, Michael E Harris. J Mol Biol 2005

Important 2'-hydroxyl groups in model substrates for M1 RNA, the catalytic RNA subunit of RNase P from Escherichia coli.
J P Perreault, S Altman. J Mol Biol 1992

Metal ion cooperativity in ribozyme cleavage of RNA.
M Brännvall, L A Kirsebom. Proc Natl Acad Sci U S A 2001

Recognition of the T stem-loop of a pre-tRNA substrate by the ribozyme from Bacillus subtilis ribonuclease P.
A Loria, T Pan. Biochemistry 1997

Recognition of a pre-tRNA substrate by the Bacillus subtilis RNase P holoenzyme.
A Loria, S Niranjanakumari, C A Fierke, T Pan. Biochemistry 1998

The affinity of magnesium binding sites in the Bacillus subtilis RNase P x pre-tRNA complex is enhanced by the protein subunit.
Jeffrey C Kurz, Carol A Fierke. Biochemistry 2002

Different cleavage sites are aligned differently in the active site of M1 RNA, the catalytic subunit of Escherichia coli RNase P.
J Kufel, L A Kirsebom. Proc Natl Acad Sci U S A 1996

Manganese ions induce miscleavage in the Escherichia coli RNase P RNA-catalyzed reaction.
M Brännvall, L A Kirsebom. J Mol Biol 1999

Cross talk between the +73/294 interaction and the cleavage site in RNase P RNA mediated cleavage.
Mathias Brännvall, Ema Kikovska, Leif A Kirsebom. Nucleic Acids Res 2004

The P15-loop of Escherichia coli RNase P RNA is an autonomous divalent metal ion binding domain.
J Kufel, L A Kirsebom. RNA 1998

Catalysis by RNase P RNA: unique features and unprecedented active site plasticity.
Tina Persson, Simona Cuzic, Roland K Hartmann. J Biol Chem 2003

Pathway of activation by magnesium ions of substrates for the catalytic subunit of RNase P from Escherichia coli.
J P Perreault, S Altman. J Mol Biol 1993

RNase P RNA structure and cleavage reflect the primary structure of tRNA genes.
M Brännvall, J G Mattsson, S G Svärd, L A Kirsebom. J Mol Biol 1998

Role of metal ions in the hydrolysis reaction catalyzed by RNase P RNA from Bacillus subtilis.
J M Warnecke, R Held, S Busch, R K Hartmann. J Mol Biol 1999

Ribonuclease P (RNase P) RNA is converted to a Cd(2+)-ribozyme by a single Rp-phosphorothioate modification in the precursor tRNA at the RNase P cleavage site.
J M Warnecke, J P Fürste, W D Hardt, V A Erdmann, R K Hartmann. Proc Natl Acad Sci U S A 1996

112

Complexity in orchestration of chemical groups near different cleavage sites in RNase P RNA mediated cleavage.
Mathias Brännvall, Leif A Kirsebom. J Mol Biol 2005

Protein component of Bacillus subtilis RNase P specifically enhances the affinity for precursor-tRNAAsp.
J C Kurz, S Niranjanakumari, C A Fierke. Biochemistry 1998

141

A kinetic mechanism for cleavage of precursor tRNA(Asp) catalyzed by the RNA component of Bacillus subtilis ribonuclease P.
J A Beebe, C A Fierke. Biochemistry 1994

136

Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates.
J F Milligan, D R Groebe, G W Witherell, O C Uhlenbeck. Nucleic Acids Res 1987

1909

The kinetics and specificity of cleavage by RNase P is mainly dependent on the structure of the amino acid acceptor stem.
L A Kirsebom, S G Svärd. Nucleic Acids Res 1992

Protein-RNA interactions in the RNase P holoenzyme from Escherichia coli.
A Vioque, J Arnez, S Altman. J Mol Biol 1988

165

Eukaryotic RNase P RNA mediates cleavage in the absence of protein.
Ema Kikovska, Staffan G Svärd, Leif A Kirsebom. Proc Natl Acad Sci U S A 2007

126

Several regions of a tRNA precursor determine the Escherichia coli RNase P cleavage site.
S G Svärd, L A Kirsebom. J Mol Biol 1992

Identification of individual nucleotides in the bacterial ribonuclease P ribozyme adjacent to the pre-tRNA cleavage site by short-range photo-cross-linking.
E L Christian, D S McPheeters, M E Harris. Biochemistry 1998

The cleavage step of ribonuclease P catalysis is determined by ribozyme-substrate interactions both distal and proximal to the cleavage site.
A Loria, T Pan. Biochemistry 1999

The Bacillus subtilis RNase P holoenzyme contains two RNase P RNA and two RNase P protein subunits.
X W Fang, X J Yang, K Littrell, S Niranjanakumari, P Thiyagarajan, C A Fierke, T R Sosnick, T Pan. RNA 2001

Differential role of the intermolecular base-pairs G292-C(75) and G293-C(74) in the reaction catalyzed by Escherichia coli RNase P RNA.
S Busch, L A Kirsebom, H Notbohm, R K Hartmann. J Mol Biol 2000

Product release is a rate-limiting step during cleavage by the catalytic RNA subunit of Escherichia coli RNase P.
A Tallsjö, L A Kirsebom. Nucleic Acids Res 1993

Protein activation of a ribozyme: the role of bacterial RNase P protein.
Amy H Buck, Andrew B Dalby, Alexander W Poole, Alexei V Kazantsev, Norman R Pace. EMBO J 2005

Crystal structure of a bacterial ribonuclease P RNA.
Alexei V Kazantsev, Angelika A Krivenko, Daniel J Harrington, Stephen R Holbrook, Paul D Adams, Norman R Pace. Proc Natl Acad Sci U S A 2005

156

Substrate discrimination in RNase P RNA-mediated cleavage: importance of the structural environment of the RNase P cleavage site.
Ema Kikovska, Mathias Brännvall, Joanna Kufel, Leif A Kirsebom. Nucleic Acids Res 2005

Kinetics of the processing of the precursor to 4.5 S RNA, a naturally occurring substrate for RNase P from Escherichia coli.
K A Peck-Miller, S Altman. J Mol Biol 1991

126

The exocyclic amine at the RNase P cleavage site contributes to substrate binding and catalysis.
Ema Kikovska, Mathias Brännvall, Leif A Kirsebom. J Mol Biol 2006

Evidence that substrate-specific effects of C5 protein lead to uniformity in binding and catalysis by RNase P.
Lei Sun, Frank E Campbell, Nathan H Zahler, Michael E Harris. EMBO J 2006

Correlation between processing efficiency for ribonuclease P minimal substrates and conformation of the nucleotide -1 at the cleavage position.
T Zuleeg, A Hansen, T Pfeiffer, H Schübel, R Kreutzer, R K Hartmann, S Limmer. Biochemistry 2001

Phylogenetic comparative mutational analysis of the base-pairing between RNase P RNA and its substrate.
S G Svärd, U Kagardt, L A Kirsebom. RNA 1996

Phylogenetic comparative chemical footprint analysis of the interaction between ribonuclease P RNA and tRNA.
T E LaGrandeur, A Hüttenhofer, H F Noller, N R Pace. EMBO J 1994

Monitoring the structure of Escherichia coli RNase P RNA in the presence of various divalent metal ions.
M Brännvall, N E Mikkelsen, L A Kirsebom. Nucleic Acids Res 2001

Identification of adenosine functional groups involved in substrate binding by the ribonuclease P ribozyme.
D Siew, N H Zahler, A G Cassano, S A Strobel, M E Harris. Biochemistry 1999

Analysis of substrate recognition by the ribonucleoprotein endonuclease RNase P.
Eric L Christian, Nathan H Zahler, Nicholas M Kaye, Michael E Harris. Methods 2002

RNase P RNAs from some Archaea are catalytically active.
J A Pannucci, E S Haas, T A Hall, J K Harris, J W Brown. Proc Natl Acad Sci U S A 1999

179

Evidence for a polynuclear metal ion binding site in the catalytic domain of ribonuclease P RNA.
Eric L Christian, Nicholas M Kaye, Michael E Harris. EMBO J 2002

Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.

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