A citation-based method for searching scientific literature

Odile Lecompte, Raymond Ripp, Jean-Claude Thierry, Dino Moras, Olivier Poch. Nucleic Acids Res 2002
Times Cited: 231







List of co-cited articles
1090 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Phylogenomics of prokaryotic ribosomal proteins.
Natalya Yutin, Pere Puigbò, Eugene V Koonin, Yuri I Wolf. PLoS One 2012
162
25

The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
742
22

A new system for naming ribosomal proteins.
Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton,[...]. Curr Opin Struct Biol 2014
339
21

One core, two shells: bacterial and eukaryotic ribosomes.
Sergey Melnikov, Adam Ben-Shem, Nicolas Garreau de Loubresse, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Nat Struct Mol Biol 2012
235
19


The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
N Ban, P Nissen, J Hansen, P B Moore, T A Steitz. Science 2000
15

History of the ribosome and the origin of translation.
Anton S Petrov, Burak Gulen, Ashlyn M Norris, Nicholas A Kovacs, Chad R Bernier, Kathryn A Lanier, George E Fox, Stephen C Harvey, Roger M Wartell, Nicholas V Hud,[...]. Proc Natl Acad Sci U S A 2015
115
15


Promiscuous behaviour of archaeal ribosomal proteins: implications for eukaryotic ribosome evolution.
Jean-Paul Armache, Andreas M Anger, Viter Márquez, Sibylle Franckenberg, Thomas Fröhlich, Elizabeth Villa, Otto Berninghausen, Michael Thomm, Georg J Arnold, Roland Beckmann,[...]. Nucleic Acids Res 2013
45
28

Asgard archaea illuminate the origin of eukaryotic cellular complexity.
Katarzyna Zaremba-Niedzwiedzka, Eva F Caceres, Jimmy H Saw, Disa Bäckström, Lina Juzokaite, Emmelien Vancaester, Kiley W Seitz, Karthik Anantharaman, Piotr Starnawski, Kasper U Kjeldsen,[...]. Nature 2017
436
12

Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6.
Sebastian Klinge, Felix Voigts-Hoffmann, Marc Leibundgut, Sofia Arpagaus, Nenad Ban. Science 2011
248
11


Molecular signatures of ribosomal evolution.
Elijah Roberts, Anurag Sethi, Jonathan Montoya, Carl R Woese, Zaida Luthey-Schulten. Proc Natl Acad Sci U S A 2008
75
14

Phylogenetic structure of the prokaryotic domain: the primary kingdoms.
C R Woese, G E Fox. Proc Natl Acad Sci U S A 1977
11

Origin and evolution of the ribosome.
George E Fox. Cold Spring Harb Perspect Biol 2010
123
11

Structure of the 30S ribosomal subunit.
B T Wimberly, D E Brodersen, W M Clemons, R J Morgan-Warren, A P Carter, C Vonrhein, T Hartsch, V Ramakrishnan. Nature 2000
10

How common are extraribosomal functions of ribosomal proteins?
Jonathan R Warner, Kerri B McIntosh. Mol Cell 2009
461
10

The structure and function of the eukaryotic ribosome.
Daniel N Wilson, Jamie H Doudna Cate. Cold Spring Harb Perspect Biol 2012
178
10

Structure of the 70S ribosome complexed with mRNA and tRNA.
Maria Selmer, Christine M Dunham, Frank V Murphy, Albert Weixlbaumer, Sabine Petry, Ann C Kelley, John R Weir, V Ramakrishnan. Science 2006
949
9

The mechanism of eukaryotic translation initiation and principles of its regulation.
Richard J Jackson, Christopher U T Hellen, Tatyana V Pestova. Nat Rev Mol Cell Biol 2010
9

Structures of the bacterial ribosome at 3.5 A resolution.
Barbara S Schuwirth, Maria A Borovinskaya, Cathy W Hau, Wen Zhang, Antón Vila-Sanjurjo, James M Holton, Jamie H Doudna Cate. Science 2005
980
9

High resolution structure of the large ribosomal subunit from a mesophilic eubacterium.
J Harms, F Schluenzen, R Zarivach, A Bashan, S Gat, I Agmon, H Bartels, F Franceschi, A Yonath. Cell 2001
677
9

Extreme genome reduction in symbiotic bacteria.
John P McCutcheon, Nancy A Moran. Nat Rev Microbiol 2011
749
9

Complex archaea that bridge the gap between prokaryotes and eukaryotes.
Anja Spang, Jimmy H Saw, Steffen L Jørgensen, Katarzyna Zaremba-Niedzwiedzka, Joran Martijn, Anders E Lind, Roel van Eijk, Christa Schleper, Lionel Guy, Thijs J G Ettema. Nature 2015
535
9

Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.
Jesus de la Cruz, Katrin Karbstein, John L Woolford. Annu Rev Biochem 2015
191
9

The role of disordered ribosomal protein extensions in the early steps of eubacterial 50 S ribosomal subunit assembly.
Youri Timsit, Zahir Acosta, Frédéric Allemand, Claude Chiaruttini, Mathias Springer. Int J Mol Sci 2009
33
24

Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1.
Julius Rabl, Marc Leibundgut, Sandro F Ataide, Andrea Haag, Nenad Ban. Science 2011
339
8

Bacterial evolution.
C R Woese. Microbiol Rev 1987
8

The archaeal origins of the eukaryotic translational system.
Hyman Hartman, Paola Favaretto, Temple F Smith. Archaea 2006
30
26

Structure of the human 80S ribosome.
Heena Khatter, Alexander G Myasnikov, S Kundhavai Natchiar, Bruno P Klaholz. Nature 2015
247
8

Ribosome biogenesis in the yeast Saccharomyces cerevisiae.
John L Woolford, Susan J Baserga. Genetics 2013
447
8

Isolation of an archaeon at the prokaryote-eukaryote interface.
Hiroyuki Imachi, Masaru K Nobu, Nozomi Nakahara, Yuki Morono, Miyuki Ogawara, Yoshihiro Takaki, Yoshinori Takano, Katsuyuki Uematsu, Tetsuro Ikuta, Motoo Ito,[...]. Nature 2020
166
8

Crystal structure of the eukaryotic ribosome.
Adam Ben-Shem, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2010
287
7

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
S F Altschul, T L Madden, A A Schäffer, J Zhang, Z Zhang, W Miller, D J Lipman. Nucleic Acids Res 1997
7

The origin and evolution of the ribosome.
Temple F Smith, Jung C Lee, Robin R Gutell, Hyman Hartman. Biol Direct 2008
51
13

Toward automatic reconstruction of a highly resolved tree of life.
Francesca D Ciccarelli, Tobias Doerks, Christian von Mering, Christopher J Creevey, Berend Snel, Peer Bork. Science 2006
971
7

Inactivation of ribosomal protein genes in Bacillus subtilis reveals importance of each ribosomal protein for cell proliferation and cell differentiation.
Genki Akanuma, Hideaki Nanamiya, Yousuke Natori, Koichi Yano, Shota Suzuki, Shuya Omata, Morio Ishizuka, Yasuhiko Sekine, Fujio Kawamura. J Bacteriol 2012
72
9

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
7

Peeling the onion: ribosomes are ancient molecular fossils.
Chiaolong Hsiao, Srividya Mohan, Benson K Kalahar, Loren Dean Williams. Mol Biol Evol 2009
83
8

An archaeal origin of eukaryotes supports only two primary domains of life.
Tom A Williams, Peter G Foster, Cymon J Cox, T Martin Embley. Nature 2013
274
7

Evolution of the ribosome at atomic resolution.
Anton S Petrov, Chad R Bernier, Chiaolong Hsiao, Ashlyn M Norris, Nicholas A Kovacs, Chris C Waterbury, Victor G Stepanov, Stephen C Harvey, George E Fox, Roger M Wartell,[...]. Proc Natl Acad Sci U S A 2014
95
7

Revising the Structural Diversity of Ribosomal Proteins Across the Three Domains of Life.
Sergey Melnikov, Kasidet Manakongtreecheep, Dieter Söll. Mol Biol Evol 2018
35
20

Root of the Tree: The Significance, Evolution, and Origins of the Ribosome.
Jessica C Bowman, Anton S Petrov, Moran Frenkel-Pinter, Petar I Penev, Loren Dean Williams. Chem Rev 2020
39
17

The assembly of prokaryotic ribosomes.
K H Nierhaus. Biochimie 1991
175
6

RPG: the Ribosomal Protein Gene database.
Akihiro Nakao, Maki Yoshihama, Naoya Kenmochi. Nucleic Acids Res 2004
120
6

Crystal structure of the ribosome at 5.5 A resolution.
M M Yusupov, G Z Yusupova, A Baucom, K Lieberman, T N Earnest, J H Cate, H F Noller. Science 2001
6


Extraribosomal functions of ribosomal proteins.
I G Wool. Trends Biochem Sci 1996
492
6

Ribosomal proteins in the spotlight.
Daniel N Wilson, Knud H Nierhaus. Crit Rev Biochem Mol Biol 2005
128
6

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding.
Jack A Dunkle, Leyi Wang, Michael B Feldman, Arto Pulk, Vincent B Chen, Gary J Kapral, Jonas Noeske, Jane S Richardson, Scott C Blanchard, Jamie H Doudna Cate. Science 2011
258
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.