A citation-based method for searching scientific literature


List of co-cited articles
372 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Regulation of chromatin by histone modifications.
Andrew J Bannister, Tony Kouzarides. Cell Res 2011
9


DNA methylation and its basic function.
Lisa D Moore, Thuc Le, Guoping Fan. Neuropsychopharmacology 2013
959
9

DNA methylation landscapes: provocative insights from epigenomics.
Miho M Suzuki, Adrian Bird. Nat Rev Genet 2008
9


Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
7

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
7

The diverse roles of DNA methylation in mammalian development and disease.
Maxim V C Greenberg, Deborah Bourc'his. Nat Rev Mol Cell Biol 2019
378
7

Perceptions of epigenetics.
Adrian Bird. Nature 2007
6

Human DNA methylomes at base resolution show widespread epigenomic differences.
Ryan Lister, Mattia Pelizzola, Robert H Dowen, R David Hawkins, Gary Hon, Julian Tonti-Filippini, Joseph R Nery, Leonard Lee, Zhen Ye, Que-Minh Ngo,[...]. Nature 2009
6

Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
6

Epigenetics and gene expression.
E R Gibney, C M Nolan. Heredity (Edinb) 2010
279
5

Epigenetic reprogramming in mammalian development.
W Reik, W Dean, J Walter. Science 2001
5

TETonic shift: biological roles of TET proteins in DNA demethylation and transcription.
William A Pastor, L Aravind, Anjana Rao. Nat Rev Mol Cell Biol 2013
525
5

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
5


Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data.
Yaping Liu, Kimberly D Siegmund, Peter W Laird, Benjamin P Berman. Genome Biol 2012
144
4

Global epigenomic reconfiguration during mammalian brain development.
Ryan Lister, Eran A Mukamel, Joseph R Nery, Mark Urich, Clare A Puddifoot, Nicholas D Johnson, Jacinta Lucero, Yun Huang, Andrew J Dwork, Matthew D Schultz,[...]. Science 2013
4

Genome-wide methylation profiles reveal quantitative views of human aging rates.
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
4

Conserved role of intragenic DNA methylation in regulating alternative promoters.
Alika K Maunakea, Raman P Nagarajan, Mikhail Bilenky, Tracy J Ballinger, Cletus D'Souza, Shaun D Fouse, Brett E Johnson, Chibo Hong, Cydney Nielsen, Yongjun Zhao,[...]. Nature 2010
4



Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
4


Molecular mechanisms of long noncoding RNAs.
Kevin C Wang, Howard Y Chang. Mol Cell 2011
3

Inhibiting DNA Methylation by 5-Aza-2'-deoxycytidine ameliorates atherosclerosis through suppressing macrophage inflammation.
Qiang Cao, Xianfeng Wang, Lin Jia, Ashis K Mondal, Abdoulaye Diallo, Gregory A Hawkins, Swapan K Das, John S Parks, Liqing Yu, Huidong Shi,[...]. Endocrinology 2014
89
3

HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
3

Detection of differentially methylated regions from whole-genome bisulfite sequencing data without replicates.
Hao Wu, Tianlei Xu, Hao Feng, Li Chen, Ben Li, Bing Yao, Zhaohui Qin, Peng Jin, Karen N Conneely. Nucleic Acids Res 2015
121
3

What do you mean, "epigenetic"?
Carrie Deans, Keith A Maggert. Genetics 2015
147
3


Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
3

Translating the histone code.
T Jenuwein, C D Allis. Science 2001
3

Decoding the epigenetic language of neuronal plasticity.
Emiliana Borrelli, Eric J Nestler, C David Allis, Paolo Sassone-Corsi. Neuron 2008
335
3

Sustained hippocampal chromatin regulation in a mouse model of depression and antidepressant action.
Nadia M Tsankova, Olivier Berton, William Renthal, Arvind Kumar, Rachel L Neve, Eric J Nestler. Nat Neurosci 2006
3

Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons.
Jian Feng, Yu Zhou, Susan L Campbell, Thuc Le, En Li, J David Sweatt, Alcino J Silva, Guoping Fan. Nat Neurosci 2010
629
3

Non-coding RNAs: regulators of disease.
Ryan J Taft, Ken C Pang, Timothy R Mercer, Marcel Dinger, John S Mattick. J Pathol 2010
692
3

MeCP2, a key contributor to neurological disease, activates and represses transcription.
Maria Chahrour, Sung Yun Jung, Chad Shaw, Xiaobo Zhou, Stephen T C Wong, Jun Qin, Huda Y Zoghbi. Science 2008
3

Implication of sperm RNAs in transgenerational inheritance of the effects of early trauma in mice.
Katharina Gapp, Ali Jawaid, Peter Sarkies, Johannes Bohacek, Pawel Pelczar, Julien Prados, Laurent Farinelli, Eric Miska, Isabelle M Mansuy. Nat Neurosci 2014
576
3

An epigenetic biomarker of aging for lifespan and healthspan.
Morgan E Levine, Ake T Lu, Austin Quach, Brian H Chen, Themistocles L Assimes, Stefania Bandinelli, Lifang Hou, Andrea A Baccarelli, James D Stewart, Yun Li,[...]. Aging (Albany NY) 2018
423
3


Epigenetic measures of ageing predict the prevalence and incidence of leading causes of death and disease burden.
Robert F Hillary, Anna J Stevenson, Daniel L McCartney, Archie Campbell, Rosie M Walker, David M Howard, Craig W Ritchie, Steve Horvath, Caroline Hayward, Andrew M McIntosh,[...]. Clin Epigenetics 2020
22
13

DNA methylation GrimAge strongly predicts lifespan and healthspan.
Ake T Lu, Austin Quach, James G Wilson, Alex P Reiner, Abraham Aviv, Kenneth Raj, Lifang Hou, Andrea A Baccarelli, Yun Li, James D Stewart,[...]. Aging (Albany NY) 2019
244
3

Epigenetic reprogramming in cancer.
Mario L Suvà, Nicolo Riggi, Bradley E Bernstein. Science 2013
457
3

Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin.
Ryan D Morin, Nathalie A Johnson, Tesa M Severson, Andrew J Mungall, Jianghong An, Rodrigo Goya, Jessica E Paul, Merrill Boyle, Bruce W Woolcock, Florian Kuchenbauer,[...]. Nat Genet 2010
3

The hallmarks of aging.
Carlos López-Otín, Maria A Blasco, Linda Partridge, Manuel Serrano, Guido Kroemer. Cell 2013
3

The role of DNA methylation in stress-related psychiatric disorders.
Torsten Klengel, Julius Pape, Elisabeth B Binder, Divya Mehta. Neuropharmacology 2014
155
3

Environmental epigenomics and disease susceptibility.
Randy L Jirtle, Michael K Skinner. Nat Rev Genet 2007
3

CpG and Non-CpG Methylation in Epigenetic Gene Regulation and Brain Function.
Hyun Sik Jang, Woo Jung Shin, Jeong Eon Lee, Jeong Tae Do. Genes (Basel) 2017
126
3

Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a.
B H Ramsahoye, D Biniszkiewicz, F Lyko, V Clark, A P Bird, R Jaenisch. Proc Natl Acad Sci U S A 2000
628
3



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.