A citation-based method for searching scientific literature

Christoph Stosiek, Olga Garaschuk, Knut Holthoff, Arthur Konnerth. Proc Natl Acad Sci U S A 2003
Times Cited: 794







List of co-cited articles
667 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
27

Deep tissue two-photon microscopy.
Fritjof Helmchen, Winfried Denk. Nat Methods 2005
19

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
545
15

Two-photon laser scanning fluorescence microscopy.
W Denk, J H Strickler, W W Webb. Science 1990
14

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
287
13

Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex.
Kenichi Ohki, Sooyoung Chung, Yeang H Ch'ng, Prakash Kara, R Clay Reid. Nature 2005
699
12

High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision.
Benjamin F Grewe, Dominik Langer, Hansjörg Kasper, Björn M Kampa, Fritjof Helmchen. Nat Methods 2010
262
12

Fully integrated silicon probes for high-density recording of neural activity.
James J Jun, Nicholas A Steinmetz, Joshua H Siegle, Daniel J Denman, Marius Bauza, Brian Barbarits, Albert K Lee, Costas A Anastassiou, Alexandru Andrei, Çağatay Aydın,[...]. Nature 2017
409
10

A highly sensitive fluorescent indicator dye for calcium imaging of neural activity in vitro and in vivo.
Mayumi Tada, Atsuya Takeuchi, Miki Hashizume, Kazuo Kitamura, Masanobu Kano. Eur J Neurosci 2014
65
13

In vivo three-photon microscopy of subcortical structures within an intact mouse brain.
Nicholas G Horton, Ke Wang, Demirhan Kobat, Catharine G Clark, Frank W Wise, Chris B Schaffer, Chris Xu. Nat Photonics 2013
471
9

Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo.
Adam M Packer, Lloyd E Russell, Henry W P Dalgleish, Michael Häusser. Nat Methods 2015
238
9

Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
9

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
332
9

In vivo imaging of neural activity.
Weijian Yang, Rafael Yuste. Nat Methods 2017
142
9

Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
691
9

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
157
9

Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat Methods 2011
423
8

Targeted bulk-loading of fluorescent indicators for two-photon brain imaging in vivo.
Olga Garaschuk, Ruxandra-Iulia Milos, Arthur Konnerth. Nat Protoc 2006
170
8

In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain.
Dimitre G Ouzounov, Tianyu Wang, Mengran Wang, Danielle D Feng, Nicholas G Horton, Jean C Cruz-Hernández, Yu-Ting Cheng, Jacob Reimer, Andreas S Tolias, Nozomi Nishimura,[...]. Nat Methods 2017
164
8

A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging.
Nicholas James Sofroniew, Daniel Flickinger, Jonathan King, Karel Svoboda. Elife 2016
194
8

Nonlinear magic: multiphoton microscopy in the biosciences.
Warren R Zipfel, Rebecca M Williams, Watt W Webb. Nat Biotechnol 2003
7

Imaging large-scale neural activity with cellular resolution in awake, mobile mice.
Daniel A Dombeck, Anton N Khabbaz, Forrest Collman, Thomas L Adelman, David W Tank. Neuron 2007
593
7

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
7

In vivo dendritic calcium dynamics in neocortical pyramidal neurons.
K Svoboda, W Denk, D Kleinfeld, D W Tank. Nature 1997
498
7

Improved deep two-photon calcium imaging in vivo.
Antje Birkner, Carsten H Tischbirek, Arthur Konnerth. Cell Calcium 2017
20
35

Whole-brain functional imaging at cellular resolution using light-sheet microscopy.
Misha B Ahrens, Michael B Orger, Drew N Robson, Jennifer M Li, Philipp J Keller. Nat Methods 2013
575
7

Volumetric Ca2+ Imaging in the Mouse Brain Using Hybrid Multiplexed Sculpted Light Microscopy.
Siegfried Weisenburger, Frank Tejera, Jeffrey Demas, Brandon Chen, Jason Manley, Fraser T Sparks, Francisca Martínez Traub, Tanya Daigle, Hongkui Zeng, Attila Losonczy,[...]. Cell 2019
39
17

Spike inference from calcium imaging using sequential Monte Carlo methods.
Joshua T Vogelstein, Brendon O Watson, Adam M Packer, Rafael Yuste, Bruno Jedynak, Liam Paninski. Biophys J 2009
105
6

Highly selective receptive fields in mouse visual cortex.
Cristopher M Niell, Michael P Stryker. J Neurosci 2008
571
6

Clusters of hyperactive neurons near amyloid plaques in a mouse model of Alzheimer's disease.
Marc Aurel Busche, Gerhard Eichhoff, Helmuth Adelsberger, Dorothee Abramowski, Karl-Heinz Wiederhold, Christian Haass, Matthias Staufenbiel, Arthur Konnerth, Olga Garaschuk. Science 2008
554
6

Thy1-GCaMP6 transgenic mice for neuronal population imaging in vivo.
Hod Dana, Tsai-Wen Chen, Amy Hu, Brenda C Shields, Caiying Guo, Loren L Looger, Douglas S Kim, Karel Svoboda. PLoS One 2014
196
6

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat Methods 2009
6

Broadly tuned response properties of diverse inhibitory neuron subtypes in mouse visual cortex.
Aaron M Kerlin, Mark L Andermann, Vladimir K Berezovskii, R Clay Reid. Neuron 2010
336
6

Automated analysis of cellular signals from large-scale calcium imaging data.
Eran A Mukamel, Axel Nimmerjahn, Mark J Schnitzer. Neuron 2009
318
6

Functional imaging of neuronal activity of auditory cortex by using Cal-520 in anesthetized and awake mice.
Jingcheng Li, Jianxiong Zhang, Meng Wang, Junxia Pan, Xiaowei Chen, Xiang Liao. Biomed Opt Express 2017
14
42

Benchmarking Spike Rate Inference in Population Calcium Imaging.
Lucas Theis, Philipp Berens, Emmanouil Froudarakis, Jacob Reimer, Miroslav Román Rosón, Tom Baden, Thomas Euler, Andreas S Tolias, Matthias Bethge. Neuron 2016
72
8

All-Optical Interrogation of Neural Circuits.
Valentina Emiliani, Adam E Cohen, Karl Deisseroth, Michael Häusser. J Neurosci 2015
141
6

Fast volumetric calcium imaging across multiple cortical layers using sculpted light.
Robert Prevedel, Aart J Verhoef, Alejandro J Pernía-Andrade, Siegfried Weisenburger, Ben S Huang, Tobias Nöbauer, Alma Fernández, Jeroen E Delcour, Peyman Golshani, Andrius Baltuska,[...]. Nat Methods 2016
61
9

Fast high-resolution miniature two-photon microscopy for brain imaging in freely behaving mice.
Weijian Zong, Runlong Wu, Mingli Li, Yanhui Hu, Yijun Li, Jinghang Li, Hao Rong, Haitao Wu, Yangyang Xu, Yang Lu,[...]. Nat Methods 2017
128
6

Fast two-photon in vivo imaging with three-dimensional random-access scanning in large tissue volumes.
Gergely Katona, Gergely Szalay, Pál Maák, Attila Kaszás, Máté Veress, Dániel Hillier, Balázs Chiovini, E Sylvester Vizi, Botond Roska, Balázs Rózsa. Nat Methods 2012
191
6

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
6

Population imaging of ongoing neuronal activity in the visual cortex of awake rats.
David S Greenberg, Arthur R Houweling, Jason N D Kerr. Nat Neurosci 2008
263
6

Fast nonnegative deconvolution for spike train inference from population calcium imaging.
Joshua T Vogelstein, Adam M Packer, Timothy A Machado, Tanya Sippy, Baktash Babadi, Rafael Yuste, Liam Paninski. J Neurophysiol 2010
198
5

In vivo two-photon microscopy to 1.6-mm depth in mouse cortex.
Demirhan Kobat, Nicholas G Horton, Chris Xu. J Biomed Opt 2011
181
5

Ultra-compact fiber-optic two-photon microscope for functional fluorescence imaging in vivo.
Christoph J Engelbrecht, Richard S Johnston, Eric J Seibel, Fritjof Helmchen. Opt Express 2008
141
5


Functional mapping of single spines in cortical neurons in vivo.
Xiaowei Chen, Ulrich Leischner, Nathalie L Rochefort, Israel Nelken, Arthur Konnerth. Nature 2011
234
5

Linear integration of spine Ca2+ signals in layer 4 cortical neurons in vivo.
Hongbo Jia, Zsuzsanna Varga, Bert Sakmann, Arthur Konnerth. Proc Natl Acad Sci U S A 2014
32
15

Dendritic organization of sensory input to cortical neurons in vivo.
Hongbo Jia, Nathalie L Rochefort, Xiaowei Chen, Arthur Konnerth. Nature 2010
298
5

Automated whole-cell patch-clamp electrophysiology of neurons in vivo.
Suhasa B Kodandaramaiah, Giovanni Talei Franzesi, Brian Y Chow, Edward S Boyden, Craig R Forest. Nat Methods 2012
102
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.