A citation-based method for searching scientific literature

Gordon G Simpson, Paul P Dijkwel, Victor Quesada, Ian Henderson, Caroline Dean. Cell 2003
Times Cited: 273







List of co-cited articles
965 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing.
Fuquan Liu, Sebastian Marquardt, Clare Lister, Szymon Swiezewski, Caroline Dean. Science 2010
287
46

The spen family protein FPA controls alternative cleavage and polyadenylation of RNA.
Csaba Hornyik, Lionel C Terzi, Gordon G Simpson. Dev Cell 2010
157
38

FCA, a gene controlling flowering time in Arabidopsis, encodes a protein containing RNA-binding domains.
R Macknight, I Bancroft, T Page, C Lister, R Schmidt, K Love, L Westphal, G Murphy, S Sherson, C Cobbett,[...]. Cell 1997
331
35

The Arabidopsis RNA-binding protein FCA requires a lysine-specific demethylase 1 homolog to downregulate FLC.
Fuquan Liu, Victor Quesada, Pedro Crevillén, Isabel Bäurle, Szymon Swiezewski, Caroline Dean. Mol Cell 2007
217
33


Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation.
Xiaohui Wu, Man Liu, Bruce Downie, Chun Liang, Guoli Ji, Qingshun Q Li, Arthur G Hunt. Proc Natl Acad Sci U S A 2011
193
26

Autoregulation of FCA pre-mRNA processing controls Arabidopsis flowering time.
Victor Quesada, Richard Macknight, Caroline Dean, Gordon G Simpson. EMBO J 2003
183
24

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target.
Szymon Swiezewski, Fuquan Liu, Andreas Magusin, Caroline Dean. Nature 2009
529
23


Regulation of flowering time by histone acetylation in Arabidopsis.
Yuehui He, Scott D Michaels, Richard M Amasino. Science 2003
332
19

Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.
Alexander Sherstnev, Céline Duc, Christian Cole, Vasiliki Zacharaki, Csaba Hornyik, Fatih Ozsolak, Patrice M Milos, Geoffrey J Barton, Gordon G Simpson. Nat Struct Mol Biol 2012
110
18

A new Arabidopsis gene, FLK, encodes an RNA binding protein with K homology motifs and regulates flowering time via FLOWERING LOCUS C.
Mi-Hye Lim, Joonki Kim, Youn-Sung Kim, Kyung-Sook Chung, Yeon-Hee Seo, Ilha Lee, Jungmook Kim, Choo Bong Hong, Hie-Joon Kim, Chung-Mo Park. Plant Cell 2004
141
18

Functional significance of the alternative transcript processing of the Arabidopsis floral promoter FCA.
Richard Macknight, Meg Duroux, Rebecca Laurie, Paul Dijkwel, Gordon Simpson, Caroline Dean. Plant Cell 2002
151
18

Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA.
Céline Duc, Alexander Sherstnev, Christian Cole, Geoffrey J Barton, Gordon G Simpson. PLoS Genet 2013
50
34

A genetic and physiological analysis of late flowering mutants in Arabidopsis thaliana.
M Koornneef, C J Hanhart, J H van der Veen. Mol Gen Genet 1991
684
17


Genome-wide control of polyadenylation site choice by CPSF30 in Arabidopsis.
Patrick E Thomas, Xiaohui Wu, Man Liu, Bobby Gaffney, Guoli Ji, Qingshun Q Li, Arthur G Hunt. Plant Cell 2012
71
22

Functional consequences of splicing of the antisense transcript COOLAIR on FLC transcription.
Sebastian Marquardt, Oleg Raitskin, Zhe Wu, Fuquan Liu, Qianwen Sun, Caroline Dean. Mol Cell 2014
162
16

Widespread role for the flowering-time regulators FCA and FPA in RNA-mediated chromatin silencing.
Isabel Bäurle, Lisa Smith, David C Baulcombe, Caroline Dean. Science 2007
129
15

Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time.
U Johanson, J West, C Lister, S Michaels, R Amasino, C Dean. Science 2000
634
15

Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing.
Yingjia Shen, R C Venu, Kan Nobuta, Xiaohui Wu, Varun Notibala, Caghan Demirci, Blake C Meyers, Guo-Liang Wang, Guoli Ji, Qingshun Q Li. Genome Res 2011
62
22

Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures.
Johnny C Loke, Eric A Stahlberg, David G Strenski, Brian J Haas, Paul Chris Wood, Qingshun Quinn Li. Plant Physiol 2005
141
14

RNA 3' processing functions of Arabidopsis FCA and FPA limit intergenic transcription.
Cagla Sonmez, Isabel Bäurle, Andreas Magusin, Rene Dreos, Sascha Laubinger, Detlef Weigel, Caroline Dean. Proc Natl Acad Sci U S A 2011
57
24




Alternative cleavage and polyadenylation: extent, regulation and function.
Ran Elkon, Alejandro P Ugalde, Reuven Agami. Nat Rev Genet 2013
481
13


The FLF MADS box gene: a repressor of flowering in Arabidopsis regulated by vernalization and methylation.
C C Sheldon, J E Burn, P P Perez, J Metzger, J A Edwards, W J Peacock, E S Dennis. Plant Cell 1999
624
13

Regulation of flowering time by FVE, a retinoblastoma-associated protein.
Israel Ausín, Carlos Alonso-Blanco, José A Jarillo, Leonor Ruiz-García, José M Martínez-Zapater. Nat Genet 2004
247
13

Regulation of flowering time in Arabidopsis by K homology domain proteins.
Todd C Mockler, Xuhong Yu, Dror Shalitin, Dhavan Parikh, Todd P Michael, Jasmine Liou, Jie Huang, Zachery Smith, Jose M Alonso, Joseph R Ecker,[...]. Proc Natl Acad Sci U S A 2004
116
13

Isolation of LUMINIDEPENDENS: a gene involved in the control of flowering time in Arabidopsis.
I Lee, M J Aukerman, S L Gore, K N Lohman, S D Michaels, L M Weaver, M C John, K A Feldmann, R M Amasino. Plant Cell 1994
195
13

R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.
Qianwen Sun, Tibor Csorba, Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Caroline Dean. Science 2013
232
12

The genetic basis of flowering responses to seasonal cues.
Fernando Andrés, George Coupland. Nat Rev Genet 2012
735
12

Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling.
Arthur G Hunt, Ruqiang Xu, Balasubrahmanyam Addepalli, Suryadevara Rao, Kevin P Forbes, Lisa R Meeks, Denghui Xing, Min Mo, Hongwei Zhao, Amrita Bandyopadhyay,[...]. BMC Genomics 2008
77
15

Alternative polyadenylation of mRNA precursors.
Bin Tian, James L Manley. Nat Rev Mol Cell Biol 2017
502
12


Regulation of flowering time: all roads lead to Rome.
Anusha Srikanth, Markus Schmid. Cell Mol Life Sci 2011
456
11

Alternative cleavage and polyadenylation: the long and short of it.
Bin Tian, James L Manley. Trends Biochem Sci 2013
220
11

Altered interactions within FY/AtCPSF complexes required for Arabidopsis FCA-mediated chromatin silencing.
David Manzano, Sebastian Marquardt, Alexandra M E Jones, Isabel Bäurle, Fuquan Liu, Caroline Dean. Proc Natl Acad Sci U S A 2009
31
35

The FRIGIDA complex activates transcription of FLC, a strong flowering repressor in Arabidopsis, by recruiting chromatin modification factors.
Kyuha Choi, Juhyun Kim, Hyun-Ju Hwang, Sanghee Kim, Chulmin Park, Sang Yeol Kim, Ilha Lee. Plant Cell 2011
180
11

Integrative genome-wide analysis reveals HLP1, a novel RNA-binding protein, regulates plant flowering by targeting alternative polyadenylation.
Yong Zhang, Lianfeng Gu, Yifeng Hou, Lulu Wang, Xian Deng, Runlai Hang, Dong Chen, Xiansheng Zhang, Yi Zhang, Chunyan Liu,[...]. Cell Res 2015
58
18

A polyadenylation factor subunit implicated in regulating oxidative signaling in Arabidopsis thaliana.
Jingxian Zhang, Balasubramanyam Addepalli, Kil-Young Yun, Arthur G Hunt, Ruqiang Xu, Suryadevara Rao, Qingshun Q Li, Deane L Falcone. PLoS One 2008
71
14

The transcription factor FLC confers a flowering response to vernalization by repressing meristem competence and systemic signaling in Arabidopsis.
Iain Searle, Yuehui He, Franziska Turck, Coral Vincent, Fabio Fornara, Sandra Kröber, Richard A Amasino, George Coupland. Genes Dev 2006
516
10

The Arabidopsis FLC protein interacts directly in vivo with SOC1 and FT chromatin and is part of a high-molecular-weight protein complex.
Chris A Helliwell, Craig C Wood, Masumi Robertson, W James Peacock, Elizabeth S Dennis. Plant J 2006
305
10


Messenger RNA 3' end formation in plants.
A G Hunt. Curr Top Microbiol Immunol 2008
51
19

Mechanisms and consequences of alternative polyadenylation.
Dafne Campigli Di Giammartino, Kensei Nishida, James L Manley. Mol Cell 2011
460
10

CPSF30 and Wdr33 directly bind to AAUAAA in mammalian mRNA 3' processing.
Serena L Chan, Ina Huppertz, Chengguo Yao, Lingjie Weng, James J Moresco, John R Yates, Jernej Ule, James L Manley, Yongsheng Shi. Genes Dev 2014
136
10

Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation.
Yingjia Shen, Guoli Ji, Brian J Haas, Xiaohui Wu, Jianti Zheng, Greg J Reese, Qingshun Quinn Li. Nucleic Acids Res 2008
104
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.