A citation-based method for searching scientific literature

I M Kulić, H Schiessel. Phys Rev Lett 2003
Times Cited: 56







List of co-cited articles
447 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
73

Polymer reptation and nucleosome repositioning.
H Schiessel, J Widom, R F Bruinsma, W M Gelbart. Phys Rev Lett 2001
80
53

Nucleosome repositioning via loop formation.
I M Kulić, H Schiessel. Biophys J 2003
48
54

Rapid spontaneous accessibility of nucleosomal DNA.
Gu Li, Marcia Levitus, Carlos Bustamante, Jonathan Widom. Nat Struct Mol Biol 2005
441
46


Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.
Curt A Davey, David F Sargent, Karolin Luger, Armin W Maeder, Timothy J Richmond. J Mol Biol 2002
954
41

Mobile nucleosomes--a general behavior.
G Meersseman, S Pennings, E M Bradbury. EMBO J 1992
240
37

A genomic code for nucleosome positioning.
Eran Segal, Yvonne Fondufe-Mittendorf, Lingyi Chen, AnnChristine Thåström, Yair Field, Irene K Moore, Ji-Ping Z Wang, Jonathan Widom. Nature 2006
35


Blocking transcription through a nucleosome with synthetic DNA ligands.
Joel M Gottesfeld, Jason M Belitsky, Christian Melander, Peter B Dervan, Karolin Luger. J Mol Biol 2002
69
30

The structure of DNA in the nucleosome core.
Timothy J Richmond, Curt A Davey. Nature 2003
766
30

Theory of nucleosome corkscrew sliding in the presence of synthetic DNA ligands.
Farshid Mohammad-Rafiee, Igor M Kulić, Helmut Schiessel. J Mol Biol 2004
23
73

Mechanisms for nucleosome mobilization.
Andrew Flaus, Tom Owen-Hughes. Biopolymers 2003
64
28


Mobility of positioned nucleosomes on 5 S rDNA.
S Pennings, G Meersseman, E M Bradbury. J Mol Biol 1991
165
25


The DNA-encoded nucleosome organization of a eukaryotic genome.
Noam Kaplan, Irene K Moore, Yvonne Fondufe-Mittendorf, Andrea J Gossett, Desiree Tillo, Yair Field, Emily M LeProust, Timothy R Hughes, Jason D Lieb, Jonathan Widom,[...]. Nature 2009
827
23

In silico evidence for sequence-dependent nucleosome sliding.
Joshua Lequieu, David C Schwartz, Juan J de Pablo. Proc Natl Acad Sci U S A 2017
32
40

DNA spools under tension.
I M Kulić, H Schiessel. Phys Rev Lett 2004
78
21

Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.
Brent D Brower-Toland, Corey L Smith, Richard C Yeh, John T Lis, Craig L Peterson, Michelle D Wang. Proc Natl Acad Sci U S A 2002
302
21

Using DNA mechanics to predict in vitro nucleosome positions and formation energies.
Alexandre V Morozov, Karissa Fortney, Daria A Gaykalova, Vasily M Studitsky, Jonathan Widom, Eric D Siggia. Nucleic Acids Res 2009
132
19

Determinants of nucleosome positioning.
Kevin Struhl, Eran Segal. Nat Struct Mol Biol 2013
357
19

Fast, long-range, reversible conformational fluctuations in nucleosomes revealed by single-pair fluorescence resonance energy transfer.
Miroslav Tomschik, Haocheng Zheng, Ken van Holde, Jordanka Zlatanova, Sanford H Leuba. Proc Natl Acad Sci U S A 2005
103
17

High-resolution dynamic mapping of histone-DNA interactions in a nucleosome.
Michael A Hall, Alla Shundrovsky, Lu Bai, Robert M Fulbright, John T Lis, Michelle D Wang. Nat Struct Mol Biol 2009
249
17

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes.
W K Olson, A A Gorin, X J Lu, L M Hock, V B Zhurkin. Proc Natl Acad Sci U S A 1998
753
17

Linker histones H1 and H5 prevent the mobility of positioned nucleosomes.
S Pennings, G Meersseman, E M Bradbury. Proc Natl Acad Sci U S A 1994
141
16


Effect of force on mononucleosomal dynamics.
Shirley Mihardja, Andrew J Spakowitz, Yongli Zhang, Carlos Bustamante. Proc Natl Acad Sci U S A 2006
134
16

Nucleosomes facilitate their own invasion.
Gu Li, Jonathan Widom. Nat Struct Mol Biol 2004
253
16

The biology of chromatin remodeling complexes.
Cedric R Clapier, Bradley R Cairns. Annu Rev Biochem 2009
16

Nucleosome disassembly intermediates characterized by single-molecule FRET.
Alexander Gansen, Alessandro Valeri, Florian Hauger, Suren Felekyan, Stanislav Kalinin, Katalin Tóth, Jörg Langowski, Claus A M Seidel. Proc Natl Acad Sci U S A 2009
123
16

Dynamics of nucleosome invasion by DNA binding proteins.
Hannah S Tims, Kaushik Gurunathan, Marcia Levitus, Jonathan Widom. J Mol Biol 2011
84
16


Sin mutations alter inherent nucleosome mobility.
Andrew Flaus, Chantal Rencurel, Helder Ferreira, Nicola Wiechens, Tom Owen-Hughes. EMBO J 2004
85
14

Crystal structures of nucleosome core particles in complex with minor groove DNA-binding ligands.
Robert K Suto, Rajeswari S Edayathumangalam, Cindy L White, Christian Melander, Joel M Gottesfeld, Peter B Dervan, Karolin Luger. J Mol Biol 2003
112
14

Histone core slips along DNA and prefers positioning at the chain end.
T Sakaue, K Yoshikawa, S H Yoshimura, K Takeyasu. Phys Rev Lett 2001
41
19


Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals.
A Flaus, K Luger, S Tan, T J Richmond. Proc Natl Acad Sci U S A 1996
139
14

Rigid-body molecular dynamics of DNA inside a nucleosome.
Arman Fathizadeh, Azim Berdy Besya, Mohammad Reza Ejtehadi, Helmut Schiessel. Eur Phys J E Soft Matter 2013
23
34

Exploring the Free Energy Landscape of Nucleosomes.
Bin Zhang, Weihua Zheng, Garegin A Papoian, Peter G Wolynes. J Am Chem Soc 2016
63
14


Nucleosome sliding: facts and fiction.
Peter B Becker. EMBO J 2002
81
12



Nucleosomes in solution exist as a mixture of twist-defect states.
Rajeswari S Edayathumangalam, Philipp Weyermann, Peter B Dervan, Joel M Gottesfeld, Karolin Luger. J Mol Biol 2005
44
15

Sequence periodicities in chicken nucleosome core DNA.
S C Satchwell, H R Drew, A A Travers. J Mol Biol 1986
763
12

Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome.
Martin Zofall, Jim Persinger, Stefan R Kassabov, Blaine Bartholomew. Nat Struct Mol Biol 2006
190
12

Artificial nucleosome positioning sequences.
T E Shrader, D M Crothers. Proc Natl Acad Sci U S A 1989
314
12


Sequence-dependent nucleosome structure and stability variations detected by Förster resonance energy transfer.
L Kelbauskas, N Chan, R Bash, J Yodh, N Woodbury, D Lohr. Biochemistry 2007
34
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.