A citation-based method for searching scientific literature

A Krupa, K R Abhinandan, N Srinivasan. Nucleic Acids Res 2004
Times Cited: 58







List of co-cited articles
442 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The protein kinase complement of the human genome.
G Manning, D B Whyte, R Martinez, T Hunter, S Sudarsanam. Science 2002
62

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
S F Altschul, T L Madden, A A Schäffer, J Zhang, Z Zhang, W Miller, D J Lipman. Nucleic Acids Res 1997
32




Profile hidden Markov models.
S R Eddy. Bioinformatics 1998
22

Evolution of protein kinase signaling from yeast to man.
Gerard Manning, Gregory D Plowman, Tony Hunter, Sucha Sudarsanam. Trends Biochem Sci 2002
655
22


A genomic perspective of protein kinases in Plasmodium falciparum.
Anamika, N Srinivasan, A Krupa. Proteins 2005
113
18


Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases.
David M A Martin, Diego Miranda-Saavedra, Geoffrey J Barton. Nucleic Acids Res 2009
64
17

The Pfam protein families database.
Alex Bateman, Ewan Birney, Lorenzo Cerruti, Richard Durbin, Laurence Etwiller, Sean R Eddy, Sam Griffiths-Jones, Kevin L Howe, Mhairi Marshall, Erik L L Sonnhammer. Nucleic Acids Res 2002
15

CDD: a curated Entrez database of conserved domain alignments.
Aron Marchler-Bauer, John B Anderson, Carol DeWeese-Scott, Natalie D Fedorova, Lewis Y Geer, Siqian He, David I Hurwitz, John D Jackson, Aviva R Jacobs, Christopher J Lanczycki,[...]. Nucleic Acids Res 2003
620
15


Protein kinase resource: an integrated environment for phosphorylation research.
Roland H Niedner, Oleksandr V Buzko, Nina M Haste, Ashton Taylor, Michael Gribskov, Susan S Taylor. Proteins 2006
37
24

Human members of the eukaryotic protein kinase family.
Mitch Kostich, Jessie English, Vincent Madison, Ferdous Gheyas, Luquan Wang, Ping Qiu, Jonathan Greene, Thomas M Laz. Genome Biol 2002
81
13

The protein kinases of Caenorhabditis elegans: a model for signal transduction in multicellular organisms.
G D Plowman, S Sudarsanam, J Bingham, D Whyte, T Hunter. Proc Natl Acad Sci U S A 1999
214
13

Multiple sequence alignment with the Clustal series of programs.
Ramu Chenna, Hideaki Sugawara, Tadashi Koike, Rodrigo Lopez, Toby J Gibson, Desmond G Higgins, Julie D Thompson. Nucleic Acids Res 2003
13

The protein kinases of budding yeast: six score and more.
T Hunter, G D Plowman. Trends Biochem Sci 1997
377
13


MulPSSM: a database of multiple position-specific scoring matrices of protein domain families.
V S Gowri, O Krishnadev, C S Swamy, N Srinivasan. Nucleic Acids Res 2006
22
36

The mouse kinome: discovery and comparative genomics of all mouse protein kinases.
Sean Caenepeel, Glen Charydczak, Sucha Sudarsanam, Tony Hunter, Gerard Manning. Proc Natl Acad Sci U S A 2004
226
13



Comparative kinomics of Plasmodium organisms: unity in diversity.
K Anamika, N Srinivasan. Protein Pept Lett 2007
19
36

The dictyostelium kinome--analysis of the protein kinases from a simple model organism.
Jonathan M Goldberg, Gerard Manning, Allen Liu, Petra Fey, Karen E Pilcher, Yanji Xu, Janet L Smith. PLoS Genet 2006
125
12

Crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MgATP and peptide inhibitor.
J Zheng, D R Knighton, L F ten Eyck, R Karlsson, N Xuong, S S Taylor, J M Sowadski. Biochemistry 1993
503
10



Comparative analysis of the receptor-like kinase family in Arabidopsis and rice.
Shin-Han Shiu, Wojciech M Karlowski, Runsun Pan, Yun-Huei Tzeng, Klaus F X Mayer, Wen-Hsiung Li. Plant Cell 2004
681
10




Analysis of the protein kinome of Entamoeba histolytica.
K Anamika, A Bhattacharya, N Srinivasan. Proteins 2008
37
16

Benchmarking PSI-BLAST in genome annotation.
A Müller, R M MacCallum, M J Sternberg. J Mol Biol 1999
82
8

Protein kinases and phosphatases in the Drosophila genome.
D K Morrison, M S Murakami, V Cleghon. J Cell Biol 2000
138
8



Arabidopsis kinome: after the casting.
A Champion, M Kreis, K Mockaitis, A Picaud, Y Henry. Funct Integr Genomics 2004
76
8


KinMutBase: a registry of disease-causing mutations in protein kinase domains.
Csaba Ortutay, Jouni Väliaho, Kaj Stenberg, Mauno Vihinen. Hum Mutat 2005
52
9

Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.
Luciano Milanesi, Mauro Petrillo, Leandra Sepe, Angelo Boccia, Nunzio D'Agostino, Myriam Passamano, Salvatore Di Nardo, Gianluca Tasco, Rita Casadio, Giovanni Paolella. BMC Bioinformatics 2005
50
10

Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
8

A genomic perspective on protein families.
R L Tatusov, E V Koonin, D J Lipman. Science 1997
8

Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins.
Francesca Diella, Scott Cameron, Christine Gemünd, Rune Linding, Allegra Via, Bernhard Kuster, Thomas Sicheritz-Pontén, Nikolaj Blom, Toby J Gibson. BMC Bioinformatics 2004
275
8

The Pfam protein families database.
Marco Punta, Penny C Coggill, Ruth Y Eberhardt, Jaina Mistry, John Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements,[...]. Nucleic Acids Res 2012
8

Receptor-like protein kinases: the keys to response.
Erin R Morris, John C Walker. Curr Opin Plant Biol 2003
136
6

Novel domains of the prokaryotic two-component signal transduction systems.
M Y Galperin, A N Nikolskaya, E V Koonin. FEMS Microbiol Lett 2001
481
6

The Pfam protein families database.
Alex Bateman, Lachlan Coin, Richard Durbin, Robert D Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L L Sonnhammer,[...]. Nucleic Acids Res 2004
6

The PlantsP and PlantsT Functional Genomics Databases.
Jason H Tchieu, Fariba Fana, J Lynn Fink, Jeffrey Harper, T Murlidharan Nair, R Hannes Niedner, Douglas W Smith, Kenneth Steube, Tobey M Tam, Stella Veretnik,[...]. Nucleic Acids Res 2003
41
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.