A Krupa, K R Abhinandan, N Srinivasan. Nucleic Acids Res 2004
Times Cited: 58
Times Cited: 58
Times Cited
Times Co-cited
Similarity
The protein kinase complement of the human genome.
G Manning, D B Whyte, R Martinez, T Hunter, S Sudarsanam. Science 2002
G Manning, D B Whyte, R Martinez, T Hunter, S Sudarsanam. Science 2002
62
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
S F Altschul, T L Madden, A A Schäffer, J Zhang, Z Zhang, W Miller, D J Lipman. Nucleic Acids Res 1997
S F Altschul, T L Madden, A A Schäffer, J Zhang, Z Zhang, W Miller, D J Lipman. Nucleic Acids Res 1997
32
Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification.
S K Hanks, T Hunter. FASEB J 1995
S K Hanks, T Hunter. FASEB J 1995
32
The repertoire of protein kinases encoded in the draft version of the human genome: atypical variations and uncommon domain combinations.
A Krupa, N Srinivasan. Genome Biol 2002
A Krupa, N Srinivasan. Genome Biol 2002
43
The protein kinase family: conserved features and deduced phylogeny of the catalytic domains.
S K Hanks, A M Quinn, T Hunter. Science 1988
S K Hanks, A M Quinn, T Hunter. Science 1988
24
Evolution of protein kinase signaling from yeast to man.
Gerard Manning, Gregory D Plowman, Tony Hunter, Sucha Sudarsanam. Trends Biochem Sci 2002
Gerard Manning, Gregory D Plowman, Tony Hunter, Sucha Sudarsanam. Trends Biochem Sci 2002
22
Diversity in domain architectures of Ser/Thr kinases and their homologues in prokaryotes.
A Krupa, N Srinivasan. BMC Genomics 2005
A Krupa, N Srinivasan. BMC Genomics 2005
20
A genomic perspective of protein kinases in Plasmodium falciparum.
Anamika, N Srinivasan, A Krupa. Proteins 2005
Anamika, N Srinivasan, A Krupa. Proteins 2005
18
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
A Krogh, B Larsson, G von Heijne, E L Sonnhammer. J Mol Biol 2001
A Krogh, B Larsson, G von Heijne, E L Sonnhammer. J Mol Biol 2001
17
Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases.
David M A Martin, Diego Miranda-Saavedra, Geoffrey J Barton. Nucleic Acids Res 2009
David M A Martin, Diego Miranda-Saavedra, Geoffrey J Barton. Nucleic Acids Res 2009
17
The Pfam protein families database.
Alex Bateman, Ewan Birney, Lorenzo Cerruti, Richard Durbin, Laurence Etwiller, Sean R Eddy, Sam Griffiths-Jones, Kevin L Howe, Mhairi Marshall, Erik L L Sonnhammer. Nucleic Acids Res 2002
Alex Bateman, Ewan Birney, Lorenzo Cerruti, Richard Durbin, Laurence Etwiller, Sean R Eddy, Sam Griffiths-Jones, Kevin L Howe, Mhairi Marshall, Erik L L Sonnhammer. Nucleic Acids Res 2002
15
CDD: a curated Entrez database of conserved domain alignments.
Aron Marchler-Bauer, John B Anderson, Carol DeWeese-Scott, Natalie D Fedorova, Lewis Y Geer, Siqian He, David I Hurwitz, John D Jackson, Aviva R Jacobs, Christopher J Lanczycki,[...]. Nucleic Acids Res 2003
Aron Marchler-Bauer, John B Anderson, Carol DeWeese-Scott, Natalie D Fedorova, Lewis Y Geer, Siqian He, David I Hurwitz, John D Jackson, Aviva R Jacobs, Christopher J Lanczycki,[...]. Nucleic Acids Res 2003
15
Genome-wide comparative analyses of domain organisation of repertoires of protein kinases of Arabidopsis thaliana and Oryza sativa.
A Krupa, Anamika, N Srinivasan. Gene 2006
A Krupa, Anamika, N Srinivasan. Gene 2006
31
Protein kinase resource: an integrated environment for phosphorylation research.
Roland H Niedner, Oleksandr V Buzko, Nina M Haste, Ashton Taylor, Michael Gribskov, Susan S Taylor. Proteins 2006
Roland H Niedner, Oleksandr V Buzko, Nina M Haste, Ashton Taylor, Michael Gribskov, Susan S Taylor. Proteins 2006
24
Human members of the eukaryotic protein kinase family.
Mitch Kostich, Jessie English, Vincent Madison, Ferdous Gheyas, Luquan Wang, Ping Qiu, Jonathan Greene, Thomas M Laz. Genome Biol 2002
Mitch Kostich, Jessie English, Vincent Madison, Ferdous Gheyas, Luquan Wang, Ping Qiu, Jonathan Greene, Thomas M Laz. Genome Biol 2002
13
The protein kinases of Caenorhabditis elegans: a model for signal transduction in multicellular organisms.
G D Plowman, S Sudarsanam, J Bingham, D Whyte, T Hunter. Proc Natl Acad Sci U S A 1999
G D Plowman, S Sudarsanam, J Bingham, D Whyte, T Hunter. Proc Natl Acad Sci U S A 1999
13
Multiple sequence alignment with the Clustal series of programs.
Ramu Chenna, Hideaki Sugawara, Tadashi Koike, Rodrigo Lopez, Toby J Gibson, Desmond G Higgins, Julie D Thompson. Nucleic Acids Res 2003
Ramu Chenna, Hideaki Sugawara, Tadashi Koike, Rodrigo Lopez, Toby J Gibson, Desmond G Higgins, Julie D Thompson. Nucleic Acids Res 2003
13
The protein kinases of budding yeast: six score and more.
T Hunter, G D Plowman. Trends Biochem Sci 1997
T Hunter, G D Plowman. Trends Biochem Sci 1997
13
Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases.
S H Shiu, A B Bleecker. Proc Natl Acad Sci U S A 2001
S H Shiu, A B Bleecker. Proc Natl Acad Sci U S A 2001
13
MulPSSM: a database of multiple position-specific scoring matrices of protein domain families.
V S Gowri, O Krishnadev, C S Swamy, N Srinivasan. Nucleic Acids Res 2006
V S Gowri, O Krishnadev, C S Swamy, N Srinivasan. Nucleic Acids Res 2006
36
The mouse kinome: discovery and comparative genomics of all mouse protein kinases.
Sean Caenepeel, Glen Charydczak, Sucha Sudarsanam, Tony Hunter, Gerard Manning. Proc Natl Acad Sci U S A 2004
Sean Caenepeel, Glen Charydczak, Sucha Sudarsanam, Tony Hunter, Gerard Manning. Proc Natl Acad Sci U S A 2004
13
Active and inactive protein kinases: structural basis for regulation.
L N Johnson, M E Noble, D J Owen. Cell 1996
L N Johnson, M E Noble, D J Owen. Cell 1996
12
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
J D Thompson, D G Higgins, T J Gibson. Nucleic Acids Res 1994
J D Thompson, D G Higgins, T J Gibson. Nucleic Acids Res 1994
12
Comparative kinomics of Plasmodium organisms: unity in diversity.
K Anamika, N Srinivasan. Protein Pept Lett 2007
K Anamika, N Srinivasan. Protein Pept Lett 2007
36
The dictyostelium kinome--analysis of the protein kinases from a simple model organism.
Jonathan M Goldberg, Gerard Manning, Allen Liu, Petra Fey, Karen E Pilcher, Yanji Xu, Janet L Smith. PLoS Genet 2006
Jonathan M Goldberg, Gerard Manning, Allen Liu, Petra Fey, Karen E Pilcher, Yanji Xu, Janet L Smith. PLoS Genet 2006
12
Crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MgATP and peptide inhibitor.
J Zheng, D R Knighton, L F ten Eyck, R Karlsson, N Xuong, S S Taylor, J M Sowadski. Biochemistry 1993
J Zheng, D R Knighton, L F ten Eyck, R Karlsson, N Xuong, S S Taylor, J M Sowadski. Biochemistry 1993
10
MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers.
S Kumar, K Tamura, M Nei. Comput Appl Biosci 1994
S Kumar, K Tamura, M Nei. Comput Appl Biosci 1994
10
Protein kinases and protein phosphatases in prokaryotes: a genomic perspective.
Peter J Kennelly. FEMS Microbiol Lett 2002
Peter J Kennelly. FEMS Microbiol Lett 2002
10
Comparative analysis of the receptor-like kinase family in Arabidopsis and rice.
Shin-Han Shiu, Wojciech M Karlowski, Runsun Pan, Yun-Huei Tzeng, Klaus F X Mayer, Wen-Hsiung Li. Plant Cell 2004
Shin-Han Shiu, Wojciech M Karlowski, Runsun Pan, Yun-Huei Tzeng, Klaus F X Mayer, Wen-Hsiung Li. Plant Cell 2004
10
Structural modes of stabilization of permissive phosphorylation sites in protein kinases: distinct strategies in Ser/Thr and Tyr kinases.
A Krupa, G Preethi, N Srinivasan. J Mol Biol 2004
A Krupa, G Preethi, N Srinivasan. J Mol Biol 2004
10
Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues.
B Anand, V S Gowri, N Srinivasan. Bioinformatics 2005
B Anand, V S Gowri, N Srinivasan. Bioinformatics 2005
25
Clustering of highly homologous sequences to reduce the size of large protein databases.
W Li, L Jaroszewski, A Godzik. Bioinformatics 2001
W Li, L Jaroszewski, A Godzik. Bioinformatics 2001
10
Analysis of the protein kinome of Entamoeba histolytica.
K Anamika, A Bhattacharya, N Srinivasan. Proteins 2008
K Anamika, A Bhattacharya, N Srinivasan. Proteins 2008
16
Benchmarking PSI-BLAST in genome annotation.
A Müller, R M MacCallum, M J Sternberg. J Mol Biol 1999
A Müller, R M MacCallum, M J Sternberg. J Mol Biol 1999
8
Protein kinases and phosphatases in the Drosophila genome.
D K Morrison, M S Murakami, V Cleghon. J Cell Biol 2000
D K Morrison, M S Murakami, V Cleghon. J Cell Biol 2000
8
Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamily.
C J Leonard, L Aravind, E V Koonin. Genome Res 1998
C J Leonard, L Aravind, E V Koonin. Genome Res 1998
8
The CLAVATA1 gene encodes a putative receptor kinase that controls shoot and floral meristem size in Arabidopsis.
S E Clark, R W Williams, E M Meyerowitz. Cell 1997
S E Clark, R W Williams, E M Meyerowitz. Cell 1997
8
Arabidopsis kinome: after the casting.
A Champion, M Kreis, K Mockaitis, A Picaud, Y Henry. Funct Integr Genomics 2004
A Champion, M Kreis, K Mockaitis, A Picaud, Y Henry. Funct Integr Genomics 2004
8
Strategies for the effective identification of remotely related sequences in multiple PSSM search approach.
V S Gowri, K G Tina, O Krishnadev, N Srinivasan. Proteins 2007
V S Gowri, K G Tina, O Krishnadev, N Srinivasan. Proteins 2007
41
KinMutBase: a registry of disease-causing mutations in protein kinase domains.
Csaba Ortutay, Jouni Väliaho, Kaj Stenberg, Mauno Vihinen. Hum Mutat 2005
Csaba Ortutay, Jouni Väliaho, Kaj Stenberg, Mauno Vihinen. Hum Mutat 2005
9
Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.
Luciano Milanesi, Mauro Petrillo, Leandra Sepe, Angelo Boccia, Nunzio D'Agostino, Myriam Passamano, Salvatore Di Nardo, Gianluca Tasco, Rita Casadio, Giovanni Paolella. BMC Bioinformatics 2005
Luciano Milanesi, Mauro Petrillo, Leandra Sepe, Angelo Boccia, Nunzio D'Agostino, Myriam Passamano, Salvatore Di Nardo, Gianluca Tasco, Rita Casadio, Giovanni Paolella. BMC Bioinformatics 2005
10
Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
8
8
Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins.
Francesca Diella, Scott Cameron, Christine Gemünd, Rune Linding, Allegra Via, Bernhard Kuster, Thomas Sicheritz-Pontén, Nikolaj Blom, Toby J Gibson. BMC Bioinformatics 2004
Francesca Diella, Scott Cameron, Christine Gemünd, Rune Linding, Allegra Via, Bernhard Kuster, Thomas Sicheritz-Pontén, Nikolaj Blom, Toby J Gibson. BMC Bioinformatics 2004
8
The Pfam protein families database.
Marco Punta, Penny C Coggill, Ruth Y Eberhardt, Jaina Mistry, John Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements,[...]. Nucleic Acids Res 2012
Marco Punta, Penny C Coggill, Ruth Y Eberhardt, Jaina Mistry, John Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements,[...]. Nucleic Acids Res 2012
8
Receptor-like protein kinases: the keys to response.
Erin R Morris, John C Walker. Curr Opin Plant Biol 2003
Erin R Morris, John C Walker. Curr Opin Plant Biol 2003
6
Novel domains of the prokaryotic two-component signal transduction systems.
M Y Galperin, A N Nikolskaya, E V Koonin. FEMS Microbiol Lett 2001
M Y Galperin, A N Nikolskaya, E V Koonin. FEMS Microbiol Lett 2001
6
The Pfam protein families database.
Alex Bateman, Lachlan Coin, Richard Durbin, Robert D Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L L Sonnhammer,[...]. Nucleic Acids Res 2004
Alex Bateman, Lachlan Coin, Richard Durbin, Robert D Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L L Sonnhammer,[...]. Nucleic Acids Res 2004
6
The PlantsP and PlantsT Functional Genomics Databases.
Jason H Tchieu, Fariba Fana, J Lynn Fink, Jeffrey Harper, T Murlidharan Nair, R Hannes Niedner, Douglas W Smith, Kenneth Steube, Tobey M Tam, Stella Veretnik,[...]. Nucleic Acids Res 2003
Jason H Tchieu, Fariba Fana, J Lynn Fink, Jeffrey Harper, T Murlidharan Nair, R Hannes Niedner, Douglas W Smith, Kenneth Steube, Tobey M Tam, Stella Veretnik,[...]. Nucleic Acids Res 2003
9
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.