A citation-based method for searching scientific literature

Benjamin P Lewis, I-hung Shih, Matthew W Jones-Rhoades, David P Bartel, Christopher B Burge. Cell 2003
Times Cited: 3788







List of co-cited articles
514 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity




Most mammalian mRNAs are conserved targets of microRNAs.
Robin C Friedman, Kyle Kai-How Farh, Christopher B Burge, David P Bartel. Genome Res 2009
18

Human MicroRNA targets.
Bino John, Anton J Enright, Alexei Aravin, Thomas Tuschl, Chris Sander, Debora S Marks. PLoS Biol 2004
18



Combinatorial microRNA target predictions.
Azra Krek, Dominic Grün, Matthew N Poy, Rachel Wolf, Lauren Rosenberg, Eric J Epstein, Philip MacMenamin, Isabelle da Piedade, Kristin C Gunsalus, Markus Stoffel,[...]. Nat Genet 2005
13


The functions of animal microRNAs.
Victor Ambros. Nature 2004
11

The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.
B J Reinhart, F J Slack, M Basson, A E Pasquinelli, J C Bettinger, A E Rougvie, H R Horvitz, G Ruvkun. Nature 2000
9

The impact of microRNAs on protein output.
Daehyun Baek, Judit Villén, Chanseok Shin, Fernando D Camargo, Steven P Gygi, David P Bartel. Nature 2008
9

MicroRNA genes are transcribed by RNA polymerase II.
Yoontae Lee, Minju Kim, Jinju Han, Kyu-Hyun Yeom, Sanghyuk Lee, Sung Hee Baek, V Narry Kim. EMBO J 2004
9

The microRNA.org resource: targets and expression.
Doron Betel, Manda Wilson, Aaron Gabow, Debora S Marks, Chris Sander. Nucleic Acids Res 2008
8

MicroRNA targets in Drosophila.
Anton J Enright, Bino John, Ulrike Gaul, Thomas Tuschl, Chris Sander, Debora S Marks. Genome Biol 2003
8


Predicting effective microRNA target sites in mammalian mRNAs.
Vikram Agarwal, George W Bell, Jin-Wu Nam, David P Bartel. Elife 2015
8


Regulation of microRNA biogenesis.
Minju Ha, V Narry Kim. Nat Rev Mol Cell Biol 2014
8

Metazoan MicroRNAs.
David P Bartel. Cell 2018
8



Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA.
A E Pasquinelli, B J Reinhart, F Slack, M Q Martindale, M I Kuroda, B Maller, D C Hayward, E E Ball, B Degnan, P Müller,[...]. Nature 2000
8

The role of site accessibility in microRNA target recognition.
Michael Kertesz, Nicola Iovino, Ulrich Unnerstall, Ulrike Gaul, Eran Segal. Nat Genet 2007
7

Principles of microRNA-target recognition.
Julius Brennecke, Alexander Stark, Robert B Russell, Stephen M Cohen. PLoS Biol 2005
7

miRBase: from microRNA sequences to function.
Ana Kozomara, Maria Birgaoanu, Sam Griffiths-Jones. Nucleic Acids Res 2019
7

MicroRNA targeting specificity in mammals: determinants beyond seed pairing.
Andrew Grimson, Kyle Kai-How Farh, Wendy K Johnston, Philip Garrett-Engele, Lee P Lim, David P Bartel. Mol Cell 2007
7

Towards a molecular understanding of microRNA-mediated gene silencing.
Stefanie Jonas, Elisa Izaurralde. Nat Rev Genet 2015
7

Natural RNA circles function as efficient microRNA sponges.
Thomas B Hansen, Trine I Jensen, Bettina H Clausen, Jesper B Bramsen, Bente Finsen, Christian K Damgaard, Jørgen Kjems. Nature 2013
7



Widespread changes in protein synthesis induced by microRNAs.
Matthias Selbach, Björn Schwanhäusser, Nadine Thierfelder, Zhuo Fang, Raya Khanin, Nikolaus Rajewsky. Nature 2008
7

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
7

Fast and effective prediction of microRNA/target duplexes.
Marc Rehmsmeier, Peter Steffen, Matthias Hochsmann, Robert Giegerich. RNA 2004
6

Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs.
Lee P Lim, Nelson C Lau, Philip Garrett-Engele, Andrew Grimson, Janell M Schelter, John Castle, David P Bartel, Peter S Linsley, Jason M Johnson. Nature 2005
6

The nuclear RNase III Drosha initiates microRNA processing.
Yoontae Lee, Chiyoung Ahn, Jinju Han, Hyounjeong Choi, Jaekwang Kim, Jeongbin Yim, Junho Lee, Patrick Provost, Olof Rådmark, Sunyoung Kim,[...]. Nature 2003
6


miRecords: an integrated resource for microRNA-target interactions.
Feifei Xiao, Zhixiang Zuo, Guoshuai Cai, Shuli Kang, Xiaolian Gao, Tongbin Li. Nucleic Acids Res 2009
6

Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation.
Jacob O'Brien, Heyam Hayder, Yara Zayed, Chun Peng. Front Endocrinol (Lausanne) 2018
6

RNAhybrid: microRNA target prediction easy, fast and flexible.
Jan Krüger, Marc Rehmsmeier. Nucleic Acids Res 2006
5

miRWalk--database: prediction of possible miRNA binding sites by "walking" the genes of three genomes.
Harsh Dweep, Carsten Sticht, Priyanka Pandey, Norbert Gretz. J Biomed Inform 2011
5

MicroInspector: a web tool for detection of miRNA binding sites in an RNA sequence.
Ventsislav Rusinov, Vesselin Baev, Ivan Nikiforov Minkov, Martin Tabler. Nucleic Acids Res 2005
192
5

An estimate of the total number of true human miRNAs.
Julia Alles, Tobias Fehlmann, Ulrike Fischer, Christina Backes, Valentina Galata, Marie Minet, Martin Hart, Masood Abu-Halima, Friedrich A Grässer, Hans-Peter Lenhof,[...]. Nucleic Acids Res 2019
211
5


The biochemical basis of microRNA targeting efficacy.
Sean E McGeary, Kathy S Lin, Charlie Y Shi, Thy M Pham, Namita Bisaria, Gina M Kelley, David P Bartel. Science 2019
141
5

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Ben Langmead, Cole Trapnell, Mihai Pop, Steven L Salzberg. Genome Biol 2009
5

Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs.
Rui Yi, Yi Qin, Ian G Macara, Bryan R Cullen. Genes Dev 2003
5



Processing of primary microRNAs by the Microprocessor complex.
Ahmet M Denli, Bastiaan B J Tops, Ronald H A Plasterk, René F Ketting, Gregory J Hannon. Nature 2004
5

The genome of the miiuy croaker reveals well-developed innate immune and sensory systems.
Tianjun Xu, Guoliang Xu, Rongbo Che, Rixin Wang, Yanjin Wang, Jinrui Li, Shanchen Wang, Chang Shu, Yuena Sun, Tianxing Liu,[...]. Sci Rep 2016
73
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.