A citation-based method for searching scientific literature

Seth Blackshaw, Sanjiv Harpavat, Jeff Trimarchi, Li Cai, Haiyan Huang, Winston P Kuo, Griffin Weber, Kyungjoon Lee, Rebecca E Fraioli, Seo-Hee Cho, Rachel Yung, Elizabeth Asch, Lucila Ohno-Machado, Wing H Wong, Constance L Cepko. PLoS Biol 2004
Times Cited: 421







List of co-cited articles
1106 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
18

Development and neurogenic potential of Müller glial cells in the vertebrate retina.
Ashutosh P Jadhav, Karin Roesch, Constance L Cepko. Prog Retin Eye Res 2009
132
18

The transcriptome of retinal Müller glial cells.
Karin Roesch, Ashutosh P Jadhav, Jeffrey M Trimarchi, Michael B Stadler, Botond Roska, Ben B Sun, Constance L Cepko. J Comp Neurol 2008
235
16

Transgenic expression of the proneural transcription factor Ascl1 in Müller glia stimulates retinal regeneration in young mice.
Yumi Ueki, Matthew S Wilken, Kristen E Cox, Laura Chipman, Nikolas Jorstad, Kristen Sternhagen, Milesa Simic, Kristy Ullom, Masato Nakafuku, Thomas A Reh. Proc Natl Acad Sci U S A 2015
113
16

Stimulation of neural regeneration in the mouse retina.
Mike O Karl, Susan Hayes, Branden R Nelson, Kristine Tan, Brian Buckingham, Thomas A Reh. Proc Natl Acad Sci U S A 2008
223
15



Stimulation of functional neuronal regeneration from Müller glia in adult mice.
Nikolas L Jorstad, Matthew S Wilken, William N Grimes, Stefanie G Wohl, Leah S VandenBosch, Takeshi Yoshimatsu, Rachel O Wong, Fred Rieke, Thomas A Reh. Nature 2017
155
14

Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction.
Nobuaki Ishii, Kouichi Ozaki, Hiroshi Sato, Hiroya Mizuno, Susumu Saito, Atsushi Takahashi, Yoshinari Miyamoto, Shiro Ikegawa, Naoyuki Kamatani, Masatsugu Hori,[...]. J Hum Genet 2006
386
13

Potential for neural regeneration after neurotoxic injury in the adult mammalian retina.
Sotaro Ooto, Tadamichi Akagi, Ryoichiro Kageyama, Joe Akita, Michiko Mandai, Yoshihito Honda, Masayo Takahashi. Proc Natl Acad Sci U S A 2004
294
13

Age-dependent Müller glia neurogenic competence in the mouse retina.
Kati Löffler, Patrick Schäfer, Manuela Völkner, Tina Holdt, Mike O Karl. Glia 2015
38
31

Otx2 homeobox gene controls retinal photoreceptor cell fate and pineal gland development.
Akihiro Nishida, Akiko Furukawa, Chieko Koike, Yasuo Tano, Shinichi Aizawa, Isao Matsuo, Takahisa Furukawa. Nat Neurosci 2003
382
12

The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons.
Masamitsu Sone, Tetsutaro Hayashi, Hiroshi Tarui, Kiyokazu Agata, Masatoshi Takeichi, Shinichi Nakagawa. J Cell Sci 2007
214
12

ASCL1 reprograms mouse Muller glia into neurogenic retinal progenitors.
Julia Pollak, Matthew S Wilken, Yumi Ueki, Kristen E Cox, Jane M Sullivan, Russell J Taylor, Edward M Levine, Thomas A Reh. Development 2013
115
12

Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification.
Brian S Clark, Genevieve L Stein-O'Brien, Fion Shiau, Gabrielle H Cannon, Emily Davis-Marcisak, Thomas Sherman, Clayton P Santiago, Thanh V Hoang, Fatemeh Rajaii, Rebecca E James-Esposito,[...]. Neuron 2019
84
14

New functions of Müller cells.
Andreas Reichenbach, Andreas Bringmann. Glia 2013
312
11

Müller glial cell-dependent regeneration of the neural retina: An overview across vertebrate model systems.
Annaïg Hamon, Jérôme E Roger, Xian-Jie Yang, Muriel Perron. Dev Dyn 2016
57
19

Math5 is required for retinal ganglion cell and optic nerve formation.
N L Brown, S Patel, J Brzezinski, T Glaser. Development 2001
354
11


Genome-wide analysis of Müller glial differentiation reveals a requirement for Notch signaling in postmitotic cells to maintain the glial fate.
Branden R Nelson, Yumi Ueki, Sara Reardon, Mike O Karl, Sean Georgi, Byron H Hartman, Deepak A Lamba, Thomas A Reh. PLoS One 2011
72
15


Cell fate determination in the vertebrate retina.
Erin A Bassett, Valerie A Wallace. Trends Neurosci 2012
149
10

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.
Karthik Shekhar, Sylvain W Lapan, Irene E Whitney, Nicholas M Tran, Evan Z Macosko, Monika Kowalczyk, Xian Adiconis, Joshua Z Levin, James Nemesh, Melissa Goldman,[...]. Cell 2016
423
10

Two transcription factors, Pou4f2 and Isl1, are sufficient to specify the retinal ganglion cell fate.
Fuguo Wu, Tadeusz J Kaczynski, Santhosh Sethuramanujam, Renzhong Li, Varsha Jain, Malcolm Slaughter, Xiuqian Mu. Proc Natl Acad Sci U S A 2015
50
18

Timing and topography of cell genesis in the rat retina.
David H Rapaport, Lily L Wong, Eric D Wood, Douglas Yasumura, Matthew M LaVail. J Comp Neurol 2004
251
9

The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing.
G Barry, J A Briggs, D P Vanichkina, E M Poth, N J Beveridge, V S Ratnu, S P Nayler, K Nones, J Hu, T W Bredy,[...]. Mol Psychiatry 2014
241
9

Otx2 and Onecut1 promote the fates of cone photoreceptors and horizontal cells and repress rod photoreceptors.
Mark M Emerson, Natalia Surzenko, Jillian J Goetz, Jeffrey Trimarchi, Constance L Cepko. Dev Cell 2013
59
15

A conserved regulatory logic controls temporal identity in mouse neural progenitors.
Pierre Mattar, Johan Ericson, Seth Blackshaw, Michel Cayouette. Neuron 2015
61
14

lncRNA-MIAT regulates microvascular dysfunction by functioning as a competing endogenous RNA.
Biao Yan, Jin Yao, Jing-Yu Liu, Xiu-Miao Li, Xiao-Qun Wang, Yu-Jie Li, Zhi-Fu Tao, Yu-Chen Song, Qi Chen, Qin Jiang. Circ Res 2015
359
9


Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation.
Tim R Mercer, Irfan A Qureshi, Solen Gokhan, Marcel E Dinger, Guangyu Li, John S Mattick, Mark F Mehler. BMC Neurosci 2010
281
9

Müller cells in the healthy and diseased retina.
Andreas Bringmann, Thomas Pannicke, Jens Grosche, Mike Francke, Peter Wiedemann, Serguei N Skatchkov, Neville N Osborne, Andreas Reichenbach. Prog Retin Eye Res 2006
979
9

Cellular signaling and factors involved in Müller cell gliosis: neuroprotective and detrimental effects.
Andreas Bringmann, Ianors Iandiev, Thomas Pannicke, Antje Wurm, Margrit Hollborn, Peter Wiedemann, Neville N Osborne, Andreas Reichenbach. Prog Retin Eye Res 2009
384
9

Conserved microRNA pathway regulates developmental timing of retinal neurogenesis.
Anna La Torre, Sean Georgi, Thomas A Reh. Proc Natl Acad Sci U S A 2013
130
9

Requirement for math5 in the development of retinal ganglion cells.
S W Wang, B S Kim, K Ding, H Wang, D Sun, R L Johnson, W H Klein, L Gan. Genes Dev 2001
348
8

Self-organizing optic-cup morphogenesis in three-dimensional culture.
Mototsugu Eiraku, Nozomu Takata, Hiroki Ishibashi, Masako Kawada, Eriko Sakakura, Satoru Okuda, Kiyotoshi Sekiguchi, Taiji Adachi, Yoshiki Sasai. Nature 2011
982
8


Donor and host photoreceptors engage in material transfer following transplantation of post-mitotic photoreceptor precursors.
R A Pearson, A Gonzalez-Cordero, E L West, J R Ribeiro, N Aghaizu, D Goh, R D Sampson, A Georgiadis, P V Waldron, Y Duran,[...]. Nat Commun 2016
134
8

The long noncoding RNA RNCR2 directs mouse retinal cell specification.
Nicole A Rapicavoli, Erin M Poth, Seth Blackshaw. BMC Dev Biol 2010
120
8


Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina.
Anand Swaroop, Douglas Kim, Douglas Forrest. Nat Rev Neurosci 2010
309
8

Ascl1 expression defines a subpopulation of lineage-restricted progenitors in the mammalian retina.
Joseph A Brzezinski, Euiseok J Kim, Jane E Johnson, Thomas A Reh. Development 2011
75
10


Wnt Regulates Proliferation and Neurogenic Potential of Müller Glial Cells via a Lin28/let-7 miRNA-Dependent Pathway in Adult Mammalian Retinas.
Kai Yao, Suo Qiu, Lin Tian, William D Snider, John G Flannery, David V Schaffer, Bo Chen. Cell Rep 2016
61
13


Pathogenic role of lncRNA-MALAT1 in endothelial cell dysfunction in diabetes mellitus.
J-Y Liu, J Yao, X-M Li, Y-C Song, X-Q Wang, Y-J Li, B Yan, Q Jiang. Cell Death Dis 2014
254
8

Role of long non-coding RNA-RNCR3 in atherosclerosis-related vascular dysfunction.
K Shan, Q Jiang, X-Q Wang, Y-N-Z Wang, H Yang, M-D Yao, C Liu, X-M Li, J Yao, B Liu,[...]. Cell Death Dis 2016
120
8

Pax6 is required for the multipotent state of retinal progenitor cells.
T Marquardt, R Ashery-Padan, N Andrejewski, R Scardigli, F Guillemot, P Gruss. Cell 2001
630
8

miR-124a is required for hippocampal axogenesis and retinal cone survival through Lhx2 suppression.
Rikako Sanuki, Akishi Onishi, Chieko Koike, Rieko Muramatsu, Satoshi Watanabe, Yuki Muranishi, Shoichi Irie, Shinji Uneo, Toshiyuki Koyasu, Ryosuke Matsui,[...]. Nat Neurosci 2011
178
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.