A citation-based method for searching scientific literature

Chad A Brautigam, Barbara S Smith, Zhiquan Ma, Maya Palnitkar, Diana R Tomchick, Mischa Machius, Johann Deisenhofer. Proc Natl Acad Sci U S A 2004
Times Cited: 218







List of co-cited articles
1329 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The cryptochromes: blue light photoreceptors in plants and animals.
Inês Chaves, Richard Pokorny, Martin Byrdin, Nathalie Hoang, Thorsten Ritz, Klaus Brettel, Lars-Oliver Essen, Gijsbertus T J van der Horst, Alfred Batschauer, Margaret Ahmad. Annu Rev Plant Biol 2011
496
58



Role of structural plasticity in signal transduction by the cryptochrome blue-light photoreceptor.
Carrie L Partch, Michael W Clarkson, Sezgin Ozgür, Andrew L Lee, Aziz Sancar. Biochemistry 2005
140
30

Structure of full-length Drosophila cryptochrome.
Brian D Zoltowski, Anand T Vaidya, Deniz Top, Joanne Widom, Michael W Young, Brian R Crane. Nature 2011
112
30

The C termini of Arabidopsis cryptochromes mediate a constitutive light response.
H Q Yang, Y J Wu, R H Tang, D Liu, Y Liu, A R Cashmore. Cell 2000
285
29

ATP binding turns plant cryptochrome into an efficient natural photoswitch.
Pavel Müller, Jean-Pierre Bouly, Kenichi Hitomi, Véronique Balland, Elizabeth D Getzoff, Thorsten Ritz, Klaus Brettel. Sci Rep 2014
72
38

Arabidopsis cryptochrome 2 (CRY2) functions by the photoactivation mechanism distinct from the tryptophan (trp) triad-dependent photoreduction.
Xu Li, Qin Wang, Xuhong Yu, Hongtao Liu, Huan Yang, Chenxi Zhao, Xuanming Liu, Chuang Tan, John Klejnot, Dongping Zhong,[...]. Proc Natl Acad Sci U S A 2011
74
37

Photoexcited CRY2 interacts with CIB1 to regulate transcription and floral initiation in Arabidopsis.
Hongtao Liu, Xuhong Yu, Kunwu Li, John Klejnot, Hongyun Yang, Dominique Lisiero, Chentao Lin. Science 2008
452
27

Crystal structure of DNA photolyase from Escherichia coli.
H W Park, S T Kim, A Sancar, J Deisenhofer. Science 1995
396
27

The signaling state of Arabidopsis cryptochrome 2 contains flavin semiquinone.
Roopa Banerjee, Erik Schleicher, Stefan Meier, Rafael Muñoz Viana, Richard Pokorny, Margaret Ahmad, Robert Bittl, Alfred Batschauer. J Biol Chem 2007
167
25

Cryptochrome blue light photoreceptors are activated through interconversion of flavin redox states.
Jean-Pierre Bouly, Erik Schleicher, Maribel Dionisio-Sese, Filip Vandenbussche, Dominique Van Der Straeten, Nadia Bakrim, Stefan Meier, Alfred Batschauer, Paul Galland, Robert Bittl,[...]. J Biol Chem 2007
252
24

Cellular metabolites enhance the light sensitivity of Arabidopsis cryptochrome through alternate electron transfer pathways.
Christopher Engelhard, Xuecong Wang, David Robles, Julia Moldt, Lars-Oliver Essen, Alfred Batschauer, Robert Bittl, Margaret Ahmad. Plant Cell 2014
51
47

Light-induced conformational changes in full-length Arabidopsis thaliana cryptochrome.
Masato Kondoh, Chiaki Shiraishi, Pavel Müller, Margaret Ahmad, Kenichi Hitomi, Elizabeth D Getzoff, Masahide Terazima. J Mol Biol 2011
57
40

Blue-light-induced changes in Arabidopsis cryptochrome 1 probed by FTIR difference spectroscopy.
Tilman Kottke, Alfred Batschauer, Margaret Ahmad, Joachim Heberle. Biochemistry 2006
86
26

Magnetically sensitive light-induced reactions in cryptochrome are consistent with its proposed role as a magnetoreceptor.
Kiminori Maeda, Alexander J Robinson, Kevin B Henbest, Hannah J Hogben, Till Biskup, Margaret Ahmad, Erik Schleicher, Stefan Weber, Christiane R Timmel, P J Hore. Proc Natl Acad Sci U S A 2012
189
23

Decrypting cryptochrome: revealing the molecular identity of the photoactivation reaction.
Ilia A Solov'yov, Tatiana Domratcheva, Abdul Rehaman Moughal Shahi, Klaus Schulten. J Am Chem Soc 2012
73
30

Association of flavin adenine dinucleotide with the Arabidopsis blue light receptor CRY1.
C Lin, D E Robertson, M Ahmad, A A Raibekas, M S Jorns, P L Dutton, A R Cashmore. Science 1995
300
22


A model for photoreceptor-based magnetoreception in birds.
T Ritz, S Adem, K Schulten. Biophys J 2000
582
22

Regulation of flowering time by Arabidopsis photoreceptors.
H Guo, H Yang, T C Mockler, C Lin. Science 1998
502
21

Light-induced electron transfer in Arabidopsis cryptochrome-1 correlates with in vivo function.
Anke Zeugner, Martin Byrdin, Jean-Pierre Bouly, Nadia Bakrim, Baldissera Giovani, Klaus Brettel, Margaret Ahmad. J Biol Chem 2005
118
21

Structures of Drosophila cryptochrome and mouse cryptochrome1 provide insight into circadian function.
Anna Czarna, Alex Berndt, Hari Raj Singh, Astrid Grudziecki, Andreas G Ladurner, Gyula Timinszky, Achim Kramer, Eva Wolf. Cell 2013
128
21

Cryptochromes: blue light receptors for plants and animals.
A R Cashmore, J A Jarillo, Y J Wu, D Liu. Science 1999
612
21

Light-induced electron transfer in a cryptochrome blue-light photoreceptor.
Baldissera Giovani, Martin Byrdin, Margaret Ahmad, Klaus Brettel. Nat Struct Biol 2003
194
20

Cryptochrome mediates light-dependent magnetosensitivity in Drosophila.
Robert J Gegear, Amy Casselman, Scott Waddell, Steven M Reppert. Nature 2008
248
20



Proton transfer to flavin stabilizes the signaling state of the blue light receptor plant cryptochrome.
Anika Hense, Elena Herman, Sabine Oldemeyer, Tilman Kottke. J Biol Chem 2015
37
51

Novel ATP-binding and autophosphorylation activity associated with Arabidopsis and human cryptochrome-1.
Jean-Pierre Bouly, Baldissera Giovani, Armin Djamei, Markus Mueller, Anke Zeugner, Elizabeth A Dudkin, Alfred Batschauer, Margaret Ahmad. Eur J Biochem 2003
80
22

Microsecond light-induced proton transfer to flavin in the blue light sensor plant cryptochrome.
Thomas Langenbacher, Dominik Immeln, Bernhard Dick, Tilman Kottke. J Am Chem Soc 2009
72
25

ATP binding and aspartate protonation enhance photoinduced electron transfer in plant cryptochrome.
Fabien Cailliez, Pavel Müller, Michaël Gallois, Aurélien de la Lande. J Am Chem Soc 2014
36
50

N-terminal domain-mediated homodimerization is required for photoreceptor activity of Arabidopsis CRYPTOCHROME 1.
Yi Sang, Qing-Hua Li, Vicente Rubio, Yan-Chun Zhang, Jian Mao, Xing-Wang Deng, Hong-Quan Yang. Plant Cell 2005
130
18

Cryptochrome structure and signal transduction.
Chentao Lin, Dror Shalitin. Annu Rev Plant Biol 2003
287
18


Trp triad-dependent rapid photoreduction is not required for the function of Arabidopsis CRY1.
Jie Gao, Xu Wang, Meng Zhang, Mingdi Bian, Weixian Deng, Zecheng Zuo, Zhenming Yang, Dongping Zhong, Chentao Lin. Proc Natl Acad Sci U S A 2015
46
39

Animal type 1 cryptochromes. Analysis of the redox state of the flavin cofactor by site-directed mutagenesis.
Nuri Öztürk, Sang-Hun Song, Christopher P Selby, Aziz Sancar. J Biol Chem 2008
97
17

Arabidopsis cryptochrome 1 interacts with SPA1 to suppress COP1 activity in response to blue light.
Bin Liu, Zecheng Zuo, Hongtao Liu, Xuanming Liu, Chentao Lin. Genes Dev 2011
241
17

Recognition and repair of UV lesions in loop structures of duplex DNA by DASH-type cryptochrome.
Richard Pokorny, Tobias Klar, Ulrich Hennecke, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. Proc Natl Acad Sci U S A 2008
127
17

Identification of a new cryptochrome class. Structure, function, and evolution.
Ronald Brudler, Kenichi Hitomi, Hiromi Daiyasu, Hiroyuki Toh, Ken-ichi Kucho, Masahiro Ishiura, Minoru Kanehisa, Victoria A Roberts, Takeshi Todo, John A Tainer,[...]. Mol Cell 2003
228
17

Enhancement of blue-light sensitivity of Arabidopsis seedlings by a blue light receptor cryptochrome 2.
C Lin, H Yang, H Guo, T Mockler, J Chen, A R Cashmore. Proc Natl Acad Sci U S A 1998
325
16

Rapid blue-light-mediated induction of protein interactions in living cells.
Matthew J Kennedy, Robert M Hughes, Leslie A Peteya, Joel W Schwartz, Michael D Ehlers, Chandra L Tucker. Nat Methods 2010
694
16

A radical sense of direction: signalling and mechanism in cryptochrome magnetoreception.
Charlotte A Dodson, P J Hore, Mark I Wallace. Trends Biochem Sci 2013
79
20

SCF(FBXL3) ubiquitin ligase targets cryptochromes at their cofactor pocket.
Weiman Xing, Luca Busino, Thomas R Hinds, Samuel T Marionni, Nabiha H Saifee, Matthew F Bush, Michele Pagano, Ning Zheng. Nature 2013
152
16

Crystal structure and mechanism of a DNA (6-4) photolyase.
Melanie J Maul, Thomas R M Barends, Andreas F Glas, Max J Cryle, Tatiana Domratcheva, Sabine Schneider, Ilme Schlichting, Thomas Carell. Angew Chem Int Ed Engl 2008
139
16

Crystal structure of cryptochrome 3 from Arabidopsis thaliana and its implications for photolyase activity.
Yihua Huang, Richard Baxter, Barbara S Smith, Carrie L Partch, Christopher L Colbert, Johann Deisenhofer. Proc Natl Acad Sci U S A 2006
93
17

Discovery and functional analysis of a 4th electron-transferring tryptophan conserved exclusively in animal cryptochromes and (6-4) photolyases.
Pavel Müller, Junpei Yamamoto, Ryan Martin, Shigenori Iwai, Klaus Brettel. Chem Commun (Camb) 2015
74
21

Derepression of the NC80 motif is critical for the photoactivation of Arabidopsis CRY2.
Xuhong Yu, Dror Shalitin, Xuanming Liu, Maskit Maymon, John Klejnot, Hongyun Yang, Javier Lopez, Xiaoying Zhao, Krishnaprasad T Bendehakkalu, Chentao Lin. Proc Natl Acad Sci U S A 2007
79
18

Blue light-dependent in vivo and in vitro phosphorylation of Arabidopsis cryptochrome 1.
Dror Shalitin, Xuhong Yu, Maskit Maymon, Todd Mockler, Chentao Lin. Plant Cell 2003
115
15



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.