A citation-based method for searching scientific literature

Heike Goehler, Maciej Lalowski, Ulrich Stelzl, Stephanie Waelter, Martin Stroedicke, Uwe Worm, Anja Droege, Katrin S Lindenberg, Maria Knoblich, Christian Haenig, Martin Herbst, Jaana Suopanki, Eberhard Scherzinger, Claudia Abraham, Bianca Bauer, Renate Hasenbank, Anja Fritzsche, Andreas H Ludewig, Konrad Büssow, Sarah H Coleman, Claire-Anne Gutekunst, Bernhard G Landwehrmeyer, Hans Lehrach, Erich E Wanker. Mol Cell 2004
Times Cited: 323







List of co-cited articles
959 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Network organization of the huntingtin proteomic interactome in mammalian brain.
Dyna I Shirasaki, Erin R Greiner, Ismael Al-Ramahi, Michelle Gray, Pinmanee Boontheung, Daniel H Geschwind, Juan Botas, Giovanni Coppola, Steve Horvath, Joseph A Loo,[...]. Neuron 2012
191
21

Huntingtin interacting proteins are genetic modifiers of neurodegeneration.
Linda S Kaltenbach, Eliana Romero, Robert R Becklin, Rakesh Chettier, Russell Bell, Amit Phansalkar, Andrew Strand, Cameron Torcassi, Justin Savage, Anthony Hurlburt,[...]. PLoS Genet 2007
295
21

A human protein-protein interaction network: a resource for annotating the proteome.
Ulrich Stelzl, Uwe Worm, Maciej Lalowski, Christian Haenig, Felix H Brembeck, Heike Goehler, Martin Stroedicke, Martina Zenkner, Anke Schoenherr, Susanne Koeppen,[...]. Cell 2005
19


Proteomic analysis of wild-type and mutant huntingtin-associated proteins in mouse brains identifies unique interactions and involvement in protein synthesis.
Brady P Culver, Jeffrey N Savas, Sung K Park, Jeong H Choi, Shuqiu Zheng, Scott O Zeitlin, John R Yates, Naoko Tanese. J Biol Chem 2012
87
18

A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration.
Janghoo Lim, Tong Hao, Chad Shaw, Akash J Patel, Gábor Szabó, Jean-François Rual, C Joseph Fisk, Ning Li, Alex Smolyar, David E Hill,[...]. Cell 2006
567
15

Towards a proteome-scale map of the human protein-protein interaction network.
Jean-François Rual, Kavitha Venkatesan, Tong Hao, Tomoko Hirozane-Kishikawa, Amélie Dricot, Ning Li, Gabriel F Berriz, Francis D Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou,[...]. Nature 2005
15

Huntingtin protein interactions altered by polyglutamine expansion as determined by quantitative proteomic analysis.
Tamara Ratovitski, Ekaterine Chighladze, Nicolas Arbez, Tatiana Boronina, Shelley Herbrich, Robert N Cole, Christopher A Ross. Cell Cycle 2012
79
15

Huntingtin interacts with a family of WW domain proteins.
P W Faber, G T Barnes, J Srinidhi, J Chen, J F Gusella, M E MacDonald. Hum Mol Genet 1998
307
10

A large scale Huntingtin protein interaction network implicates Rho GTPase signaling pathways in Huntington disease.
Cendrine Tourette, Biao Li, Russell Bell, Shannon O'Hare, Linda S Kaltenbach, Sean D Mooney, Robert E Hughes. J Biol Chem 2014
57
17


Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
9

The Huntington's disease protein interacts with p53 and CREB-binding protein and represses transcription.
J S Steffan, A Kazantsev, O Spasic-Boskovic, M Greenwald, Y Z Zhu, H Gohler, E E Wanker, G P Bates, D E Housman, L M Thompson. Proc Natl Acad Sci U S A 2000
799
9

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
M Ashburner, C A Ball, J A Blake, D Botstein, H Butler, J M Cherry, A P Davis, K Dolinski, S S Dwight, J T Eppig,[...]. Nat Genet 2000
9

Huntington's disease: from molecular pathogenesis to clinical treatment.
Christopher A Ross, Sarah J Tabrizi. Lancet Neurol 2011
987
9

Network medicine: a network-based approach to human disease.
Albert-László Barabási, Natali Gulbahce, Joseph Loscalzo. Nat Rev Genet 2011
8

An empirical framework for binary interactome mapping.
Kavitha Venkatesan, Jean-François Rual, Alexei Vazquez, Ulrich Stelzl, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Martina Zenkner, Xiaofeng Xin, Kwang-Il Goh,[...]. Nat Methods 2009
573
8

The human disease network.
Kwang-Il Goh, Michael E Cusick, David Valle, Barton Childs, Marc Vidal, Albert-László Barabási. Proc Natl Acad Sci U S A 2007
8

Regional and cellular gene expression changes in human Huntington's disease brain.
Angela Hodges, Andrew D Strand, Aaron K Aragaki, Alexandre Kuhn, Thierry Sengstag, Gareth Hughes, Lyn A Elliston, Cathy Hartog, Darlene R Goldstein, Doris Thu,[...]. Hum Mol Genet 2006
541
8

Molecular mechanisms and potential therapeutical targets in Huntington's disease.
Chiara Zuccato, Marta Valenza, Elena Cattaneo. Physiol Rev 2010
575
8

The multifunctional GIT family of proteins.
Ryan J Hoefen, Bradford C Berk. J Cell Sci 2006
183
8

Formation of neuronal intranuclear inclusions underlies the neurological dysfunction in mice transgenic for the HD mutation.
S W Davies, M Turmaine, B A Cozens, M DiFiglia, A H Sharp, C A Ross, E Scherzinger, E E Wanker, L Mangiarini, G P Bates. Cell 1997
8


A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae.
P Uetz, L Giot, G Cagney, T A Mansfield, R S Judson, J R Knight, D Lockshon, V Narayan, M Srinivasan, P Pochart,[...]. Nature 2000
7

Inhibition of mTOR induces autophagy and reduces toxicity of polyglutamine expansions in fly and mouse models of Huntington disease.
Brinda Ravikumar, Coralie Vacher, Zdenek Berger, Janet E Davies, Shouqing Luo, Lourdes G Oroz, Francesco Scaravilli, Douglas F Easton, Rainer Duden, Cahir J O'Kane,[...]. Nat Genet 2004
7

Huntingtin is a cytoplasmic protein associated with vesicles in human and rat brain neurons.
M DiFiglia, E Sapp, K Chase, C Schwarz, A Meloni, C Young, E Martin, J P Vonsattel, R Carraway, S A Reeves. Neuron 1995
576
7

Synapse formation is regulated by the signaling adaptor GIT1.
Huaye Zhang, Donna J Webb, Hannelore Asmussen, Alan F Horwitz. J Cell Biol 2003
158
7

Neuropathological classification of Huntington's disease.
J P Vonsattel, R H Myers, T J Stevens, R J Ferrante, E D Bird, E P Richardson. J Neuropathol Exp Neurol 1985
7

IKK phosphorylates Huntingtin and targets it for degradation by the proteasome and lysosome.
Leslie Michels Thompson, Charity T Aiken, Linda S Kaltenbach, Namita Agrawal, Katalin Illes, Ali Khoshnan, Marta Martinez-Vincente, Montserrat Arrasate, Jacqueline Gire O'Rourke, Hasan Khashwji,[...]. J Cell Biol 2009
263
7

Targeted disruption of the Huntington's disease gene results in embryonic lethality and behavioral and morphological changes in heterozygotes.
J Nasir, S B Floresco, J R O'Kusky, V M Diewert, J M Richman, J Zeisler, A Borowski, J D Marth, A G Phillips, M R Hayden. Cell 1995
607
7

Huntingtin functions as a scaffold for selective macroautophagy.
Yan-Ning Rui, Zhen Xu, Bindi Patel, Zhihua Chen, Dongsheng Chen, Antonio Tito, Gabriela David, Yamin Sun, Erin F Stimming, Hugo J Bellen,[...]. Nat Cell Biol 2015
264
7

The Biology of Huntingtin.
Frédéric Saudou, Sandrine Humbert. Neuron 2016
436
7

Huntington disease.
Gillian P Bates, Ray Dorsey, James F Gusella, Michael R Hayden, Chris Kay, Blair R Leavitt, Martha Nance, Christopher A Ross, Rachael I Scahill, Ronald Wetzel,[...]. Nat Rev Dis Primers 2015
682
7

Network modeling links breast cancer susceptibility and centrosome dysfunction.
Miguel Angel Pujana, Jing-Dong J Han, Lea M Starita, Kristen N Stevens, Muneesh Tewari, Jin Sook Ahn, Gad Rennert, Víctor Moreno, Tomas Kirchhoff, Bert Gold,[...]. Nat Genet 2007
433
6

Huntington's disease.
Francis O Walker. Lancet 2007
6

Huntingtin facilitates dynein/dynactin-mediated vesicle transport.
Juliane P Caviston, Jennifer L Ross, Sheila M Antony, Mariko Tokito, Erika L F Holzbaur. Proc Natl Acad Sci U S A 2007
207
6

Aberrant interactions of transcriptional repressor proteins with the Huntington's disease gene product, huntingtin.
J M Boutell, P Thomas, J W Neal, V J Weston, J Duce, P S Harper, A L Jones. Hum Mol Genet 1999
236
6

hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes.
Philippe Lamesch, Ning Li, Stuart Milstein, Changyu Fan, Tong Hao, Gabor Szabo, Zhenjun Hu, Kavitha Venkatesan, Graeme Bethel, Paul Martin,[...]. Genomics 2007
210
6

HIPPIE: Integrating protein interaction networks with experiment based quality scores.
Martin H Schaefer, Jean-Fred Fontaine, Arunachalam Vinayagam, Pablo Porras, Erich E Wanker, Miguel A Andrade-Navarro. PLoS One 2012
214
6

Huntingtin as an essential integrator of intracellular vesicular trafficking.
Juliane P Caviston, Erika L F Holzbaur. Trends Cell Biol 2009
182
6

Palmitoylation of huntingtin by HIP14 is essential for its trafficking and function.
Anat Yanai, Kun Huang, Rujun Kang, Roshni R Singaraja, Pamela Arstikaitis, Lu Gan, Paul C Orban, Asher Mullard, Catherine M Cowan, Lynn A Raymond,[...]. Nat Neurosci 2006
213
6

Detection of alpha-rod protein repeats using a neural network and application to huntingtin.
Gareth A Palidwor, Sergey Shcherbinin, Matthew R Huska, Tamas Rasko, Ulrich Stelzl, Anup Arumughan, Raphaele Foulle, Pablo Porras, Luis Sanchez-Pulido, Erich E Wanker,[...]. PLoS Comput Biol 2009
50
12

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
6


Huntingtin controls neurotrophic support and survival of neurons by enhancing BDNF vesicular transport along microtubules.
Laurent R Gauthier, Bénédicte C Charrin, Maria Borrell-Pagès, Jim P Dompierre, Hélène Rangone, Fabrice P Cordelières, Jan De Mey, Marcy E MacDonald, Volkmar Lessmann, Sandrine Humbert,[...]. Cell 2004
810
6

An experimentally derived confidence score for binary protein-protein interactions.
Pascal Braun, Murat Tasan, Matija Dreze, Miriam Barrios-Rodiles, Irma Lemmens, Haiyuan Yu, Julie M Sahalie, Ryan R Murray, Luba Roncari, Anne-Sophie de Smet,[...]. Nat Methods 2009
320
6

Huntingtin interacts with REST/NRSF to modulate the transcription of NRSE-controlled neuronal genes.
Chiara Zuccato, Marzia Tartari, Andrea Crotti, Donato Goffredo, Marta Valenza, Luciano Conti, Tiziana Cataudella, Blair R Leavitt, Michael R Hayden, Tõnis Timmusk,[...]. Nat Genet 2003
667
6

Huntingtin phosphorylation acts as a molecular switch for anterograde/retrograde transport in neurons.
Emilie Colin, Diana Zala, Géraldine Liot, Hélène Rangone, Maria Borrell-Pagès, Xiao-Jiang Li, Frédéric Saudou, Sandrine Humbert. EMBO J 2008
240
6

Inclusion body formation reduces levels of mutant huntingtin and the risk of neuronal death.
Montserrat Arrasate, Siddhartha Mitra, Erik S Schweitzer, Mark R Segal, Steven Finkbeiner. Nature 2004
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.