A citation-based method for searching scientific literature

Robert M Dirks, Niles A Pierce. Proc Natl Acad Sci U S A 2004
Times Cited: 930







List of co-cited articles
869 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Programming biomolecular self-assembly pathways.
Peng Yin, Harry M T Choi, Colby R Calvert, Niles A Pierce. Nature 2008
798
34


Engineering entropy-driven reactions and networks catalyzed by DNA.
David Yu Zhang, Andrew J Turberfield, Bernard Yurke, Erik Winfree. Science 2007
555
19


Dynamic DNA nanotechnology using strand-displacement reactions.
David Yu Zhang, Georg Seelig. Nat Chem 2011
835
16

A DNA-fuelled molecular machine made of DNA.
B Yurke, A J Turberfield, A P Mills, F C Simmel, J L Neumann. Nature 2000
15


Enzyme-free nucleic acid logic circuits.
Georg Seelig, David Soloveichik, David Yu Zhang, Erik Winfree. Science 2006
715
13

Nucleic acid junctions and lattices.
N C Seeman. J Theor Biol 1982
12

Programmable in situ amplification for multiplexed imaging of mRNA expression.
Harry M T Choi, Joann Y Chang, Le A Trinh, Jennifer E Padilla, Scott E Fraser, Niles A Pierce. Nat Biotechnol 2010
362
12

Control of DNA strand displacement kinetics using toehold exchange.
David Yu Zhang, Erik Winfree. J Am Chem Soc 2009
654
12


Loop-mediated isothermal amplification of DNA.
T Notomi, H Okayama, H Masubuchi, T Yonekawa, K Watanabe, N Amino, T Hase. Nucleic Acids Res 2000
11



Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust.
Harry M T Choi, Maayan Schwarzkopf, Mark E Fornace, Aneesh Acharya, Georgios Artavanis, Johannes Stegmaier, Alexandre Cunha, Niles A Pierce. Development 2018
244
9

Isothermal Amplification of Nucleic Acids.
Yongxi Zhao, Feng Chen, Qian Li, Lihua Wang, Chunhai Fan. Chem Rev 2015
638
9

RNA imaging in living mice enabled by an in vivo hybridization chain reaction circuit with a tripartite DNA probe.
Han Wu, Ting-Ting Chen, Xiang-Nan Wang, Yonggang Ke, Jian-Hui Jiang. Chem Sci 2019
35
25

Rational, modular adaptation of enzyme-free DNA circuits to multiple detection methods.
Bingling Li, Andrew D Ellington, Xi Chen. Nucleic Acids Res 2011
302
9



Pyrene-excimer probes based on the hybridization chain reaction for the detection of nucleic acids in complex biological fluids.
Jin Huang, Yanrong Wu, Yan Chen, Zhi Zhu, Xiaohai Yang, Chaoyong James Yang, Kemin Wang, Weihong Tan. Angew Chem Int Ed Engl 2011
339
8

Construction of an enzyme-free concatenated DNA circuit for signal amplification and intracellular imaging.
Huimin Wang, Chunxiao Li, Xiaoqing Liu, Xiang Zhou, Fuan Wang. Chem Sci 2018
84
9

On the biophysics and kinetics of toehold-mediated DNA strand displacement.
Niranjan Srinivas, Thomas E Ouldridge, Petr Sulc, Joseph M Schaeffer, Bernard Yurke, Ard A Louis, Jonathan P K Doye, Erik Winfree. Nucleic Acids Res 2013
227
8

Diagnostic applications of nucleic acid circuits.
Cheulhee Jung, Andrew D Ellington. Acc Chem Res 2014
171
8

Three-dimensional DNA nanostructures to improve the hyperbranched hybridization chain reaction.
Jing Wang, Dong-Xia Wang, Jia-Yi Ma, Ya-Xin Wang, De-Ming Kong. Chem Sci 2019
59
13

Construction of a Multiple-Aptamer-Based DNA Logic Device on Live Cell Membranes via Associative Toehold Activation for Accurate Cancer Cell Identification.
Xu Chang, Chao Zhang, Cheng Lv, Yang Sun, Mingzhi Zhang, Yumeng Zhao, Linlin Yang, Da Han, Weihong Tan. J Am Chem Soc 2019
91
8

DNA Nanofirecrackers Assembled through Hybridization Chain Reaction for Ultrasensitive SERS Immunoassay of Prostate Specific Antigen.
Jia Ru Wang, Chang Xia, Lin Yang, Yuan Fang Li, Chun Mei Li, Cheng Zhi Huang. Anal Chem 2020
27
29


A spatially localized architecture for fast and modular DNA computing.
Gourab Chatterjee, Neil Dalchau, Richard A Muscat, Andrew Phillips, Georg Seelig. Nat Nanotechnol 2017
122
8

Principles and Applications of Nucleic Acid Strand Displacement Reactions.
Friedrich C Simmel, Bernard Yurke, Hari R Singh. Chem Rev 2019
148
8

Functional nucleic acid-based hydrogels for bioanalytical and biomedical applications.
Juan Li, Liuting Mo, Chun-Hua Lu, Ting Fu, Huang-Hao Yang, Weihong Tan. Chem Soc Rev 2016
235
7

Aptamer-integrated DNA nanostructures for biosensing, bioimaging and cancer therapy.
Hong-Min Meng, Hui Liu, Hailan Kuai, Ruizi Peng, Liuting Mo, Xiao-Bing Zhang. Chem Soc Rev 2016
267
7

Rolling circle amplification: a versatile tool for chemical biology, materials science and medicine.
M Monsur Ali, Feng Li, Zhiqing Zhang, Kaixiang Zhang, Dong-Ku Kang, James A Ankrum, X Chris Le, Weian Zhao. Chem Soc Rev 2014
439
7

Chemical and Biological Sensing Using Hybridization Chain Reaction.
Erik E Augspurger, Muhit Rana, Mehmet V Yigit. ACS Sens 2018
35
20

A Smart, Autocatalytic, DNAzyme Biocircuit for in Vivo, Amplified, MicroRNA Imaging.
Jie Wei, Huimin Wang, Qiong Wu, Xue Gong, Kang Ma, Xiaoqing Liu, Fuan Wang. Angew Chem Int Ed Engl 2020
49
14

Hyperbranched Hybridization Chain Reaction for Triggered Signal Amplification and Concatenated Logic Circuits.
Sai Bi, Min Chen, Xiaoqiang Jia, Ying Dong, Zonghua Wang. Angew Chem Int Ed Engl 2015
83
8

Remote toehold: a mechanism for flexible control of DNA hybridization kinetics.
Anthony J Genot, David Yu Zhang, Jonathan Bath, Andrew J Turberfield. J Am Chem Soc 2011
152
7

DNA Origami: Scaffolds for Creating Higher Order Structures.
Fan Hong, Fei Zhang, Yan Liu, Hao Yan. Chem Rev 2017
406
7

The Recent Development of Hybridization Chain Reaction Strategies in Biosensors.
Chuyan Zhang, Jing Chen, Rui Sun, Zhijun Huang, Zewei Luo, Chen Zhou, Mengfan Wu, Yixiang Duan, Yongxin Li. ACS Sens 2020
19
36

Near-Infrared Light-Initiated Hybridization Chain Reaction for Spatially and Temporally Resolved Signal Amplification.
Hongqian Chu, Jian Zhao, Yongsheng Mi, Yuliang Zhao, Lele Li. Angew Chem Int Ed Engl 2019
67
10

DNA origami with complex curvatures in three-dimensional space.
Dongran Han, Suchetan Pal, Jeanette Nangreave, Zhengtao Deng, Yan Liu, Hao Yan. Science 2011
599
6

Aptamers evolved from live cells as effective molecular probes for cancer study.
Dihua Shangguan, Ying Li, Zhiwen Tang, Zehui Charles Cao, Hui William Chen, Prabodhika Mallikaratchy, Kwame Sefah, Chaoyong James Yang, Weihong Tan. Proc Natl Acad Sci U S A 2006
928
6

A DNA nanorobot functions as a cancer therapeutic in response to a molecular trigger in vivo.
Suping Li, Qiao Jiang, Shaoli Liu, Yinlong Zhang, Yanhua Tian, Chen Song, Jing Wang, Yiguo Zou, Gregory J Anderson, Jing-Yan Han,[...]. Nat Biotechnol 2018
481
6

Self-assembly of DNA into nanoscale three-dimensional shapes.
Shawn M Douglas, Hendrik Dietz, Tim Liedl, Björn Högberg, Franziska Graf, William M Shih. Nature 2009
6

Noncanonical self-assembly of multifunctional DNA nanoflowers for biomedical applications.
Guizhi Zhu, Rong Hu, Zilong Zhao, Zhuo Chen, Xiaobing Zhang, Weihong Tan. J Am Chem Soc 2013
206
6

Enzyme-catalysed assembly of DNA hydrogel.
Soong Ho Um, Jong Bum Lee, Nokyoung Park, Sang Yeon Kwon, Christopher C Umbach, Dan Luo. Nat Mater 2006
402
6

Complex shapes self-assembled from single-stranded DNA tiles.
Bryan Wei, Mingjie Dai, Peng Yin. Nature 2012
497
6

Stimuli-Responsive DNA-Based Hydrogels: From Basic Principles to Applications.
Jason S Kahn, Yuwei Hu, Itamar Willner. Acc Chem Res 2017
159
6

A DNAzyme-amplified DNA circuit for highly accurate microRNA detection and intracellular imaging.
Hong Wang, Huimin Wang, Qiong Wu, Meijuan Liang, Xiaoqing Liu, Fuan Wang. Chem Sci 2019
37
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.