A citation-based method for searching scientific literature

Benedetta Dorigo, Thomas Schalch, Alexandra Kulangara, Sylwia Duda, Rasmus R Schroeder, Timothy J Richmond. Science 2004
Times Cited: 372







List of co-cited articles
1031 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
71

Cryo-EM study of the chromatin fiber reveals a double helix twisted by tetranucleosomal units.
Feng Song, Ping Chen, Dapeng Sun, Mingzhu Wang, Liping Dong, Dan Liang, Rui-Ming Xu, Ping Zhu, Guohong Li. Science 2014
334
67

X-ray structure of a tetranucleosome and its implications for the chromatin fibre.
Thomas Schalch, Sylwia Duda, David F Sargent, Timothy J Richmond. Nature 2005
503
59

EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure.
Philip J J Robinson, Louise Fairall, Van A T Huynh, Daniela Rhodes. Proc Natl Acad Sci U S A 2006
304
39

Solenoidal model for superstructure in chromatin.
J T Finch, A Klug. Proc Natl Acad Sci U S A 1976
36

Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure.
Andrew Routh, Sara Sandin, Daniela Rhodes. Proc Natl Acad Sci U S A 2008
232
33

Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo.
Maria Aurelia Ricci, Carlo Manzo, María Filomena García-Parajo, Melike Lakadamyali, Maria Pia Cosma. Cell 2015
296
32

Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.
Curt A Davey, David F Sargent, Karolin Luger, Armin W Maeder, Timothy J Richmond. J Mol Biol 2002
956
30

Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ.
Mikhail Eltsov, Kirsty M Maclellan, Kazuhiro Maeshima, Achilleas S Frangakis, Jacques Dubochet. Proc Natl Acad Sci U S A 2008
225
27

Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure.
Yoshinori Nishino, Mikhail Eltsov, Yasumasa Joti, Kazuki Ito, Hideaki Takata, Yukio Takahashi, Saera Hihara, Achilleas S Frangakis, Naoko Imamoto, Tetsuya Ishikawa,[...]. EMBO J 2012
190
26

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C.
Tsung-Han S Hsieh, Assaf Weiner, Bryan Lajoie, Job Dekker, Nir Friedman, Oliver J Rando. Cell 2015
275
26

Chromatin fiber folding: requirement for the histone H4 N-terminal tail.
Benedetta Dorigo, Thomas Schalch, Kerstin Bystricky, Timothy J Richmond. J Mol Biol 2003
366
24


ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells.
Horng D Ou, Sébastien Phan, Thomas J Deerinck, Andrea Thor, Mark H Ellisman, Clodagh C O'Shea. Science 2017
348
24

Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions.
Sergei A Grigoryev, Gaurav Arya, Sarah Correll, Christopher L Woodcock, Tamar Schlick. Proc Natl Acad Sci U S A 2009
156
23

Histone H4-K16 acetylation controls chromatin structure and protein interactions.
Michael Shogren-Knaak, Haruhiko Ishii, Jian-Min Sun, Michael J Pazin, James R Davie, Craig L Peterson. Science 2006
23

Structural Mechanisms of Nucleosome Recognition by Linker Histones.
Bing-Rui Zhou, Jiansheng Jiang, Hanqiao Feng, Rodolfo Ghirlando, T Sam Xiao, Yawen Bai. Mol Cell 2015
124
23


Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes.
Sergei A Grigoryev, Gavin Bascom, Jenna M Buckwalter, Michael B Schubert, Christopher L Woodcock, Tamar Schlick. Proc Natl Acad Sci U S A 2016
82
24

Variable chromatin structure revealed by in situ spatially correlated DNA cleavage mapping.
Viviana I Risca, Sarah K Denny, Aaron F Straight, William J Greenleaf. Nature 2017
86
23

Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei.
Margot P Scheffer, Mikhail Eltsov, Achilleas S Frangakis. Proc Natl Acad Sci U S A 2011
85
22

New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?
Karolin Luger, Mekonnen L Dechassa, David J Tremethick. Nat Rev Mol Cell Biol 2012
382
19


Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber.
Maarten Kruithof, Fan-Tso Chien, Andrew Routh, Colin Logie, Daniela Rhodes, John van Noort. Nat Struct Mol Biol 2009
170
18


Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1.
Jan Bednar, Isabel Garcia-Saez, Ramachandran Boopathi, Amber R Cutter, Gabor Papai, Anna Reymer, Sajad H Syed, Imtiaz Nisar Lone, Ognyan Tonchev, Corinne Crucifix,[...]. Mol Cell 2017
116
18

Nucleosome structure and function.
Robert K McGinty, Song Tan. Chem Rev 2015
201
17

Chromatin structure: does the 30-nm fibre exist in vivo?
Kazuhiro Maeshima, Saera Hihara, Mikhail Eltsov. Curr Opin Cell Biol 2010
166
17

Nucleosomal arrays self-assemble into supramolecular globular structures lacking 30-nm fibers.
Kazuhiro Maeshima, Ryan Rogge, Sachiko Tamura, Yasumasa Joti, Takaaki Hikima, Heather Szerlong, Christine Krause, Jake Herman, Erik Seidel, Jennifer DeLuca,[...]. EMBO J 2016
92
18

Short nucleosome repeats impose rotational modulations on chromatin fibre folding.
Sarah J Correll, Michaela H Schubert, Sergei A Grigoryev. EMBO J 2012
71
23

Open and closed domains in the mouse genome are configured as 10-nm chromatin fibres.
Eden Fussner, Mike Strauss, Ugljesa Djuric, Ren Li, Kashif Ahmed, Michael Hart, James Ellis, David P Bazett-Jones. EMBO Rep 2012
98
16

Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length.
S P Williams, B D Athey, L J Muglia, R S Schappe, A H Gough, J P Langmore. Biophys J 1986
185
16

Chromatin fiber polymorphism triggered by variations of DNA linker lengths.
Rosana Collepardo-Guevara, Tamar Schlick. Proc Natl Acad Sci U S A 2014
81
19

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
16


Structural insights into the histone H1-nucleosome complex.
Bing-Rui Zhou, Hanqiao Feng, Hidenori Kato, Liang Dai, Yuedong Yang, Yaoqi Zhou, Yawen Bai. Proc Natl Acad Sci U S A 2013
124
15

The role of the nucleosome acidic patch in modulating higher order chromatin structure.
Anna A Kalashnikova, Mary E Porter-Goff, Uma M Muthurajan, Karolin Luger, Jeffrey C Hansen. J R Soc Interface 2013
131
15

Chromatin as dynamic 10-nm fibers.
Kazuhiro Maeshima, Ryosuke Imai, Sachiko Tamura, Tadasu Nozaki. Chromosoma 2014
108
15

Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length.
Christopher L Woodcock, Arthur I Skoultchi, Yuhong Fan. Chromosome Res 2006
297
15

30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction.
Philip J J Robinson, Woojin An, Andrew Routh, Fabrizio Martino, Lynda Chapman, Robert G Roeder, Daniela Rhodes. J Mol Biol 2008
217
15

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
15

Capturing Structural Heterogeneity in Chromatin Fibers.
Babatunde Ekundayo, Timothy J Richmond, Thomas Schalch. J Mol Biol 2017
31
48

Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome.
Sajad Hussain Syed, Damien Goutte-Gattat, Nils Becker, Sam Meyer, Manu Shubhdarshan Shukla, Jeffrey J Hayes, Ralf Everaers, Dimitar Angelov, Jan Bednar, Stefan Dimitrov. Proc Natl Acad Sci U S A 2010
133
14

Living without 30nm chromatin fibers.
Eden Fussner, Reagan W Ching, David P Bazett-Jones. Trends Biochem Sci 2011
124
14

Structure of RCC1 chromatin factor bound to the nucleosome core particle.
Ravindra D Makde, Joseph R England, Hemant P Yennawar, Song Tan. Nature 2010
265
13

The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association.
Abdollah Allahverdi, Renliang Yang, Nikolay Korolev, Yanping Fan, Curt A Davey, Chuan-Fa Liu, Lars Nordenskiöld. Nucleic Acids Res 2011
130
13


FACT Remodels the Tetranucleosomal Unit of Chromatin Fibers for Gene Transcription.
Wei Li, Ping Chen, Juan Yu, Liping Dong, Dan Liang, Jianxun Feng, Jie Yan, Peng-Ye Wang, Qing Li, Zhiguo Zhang,[...]. Mol Cell 2016
43
30

Spheroid chromatin units (v bodies).
A L Olins, D E Olins. Science 1974
13

Chromosomes without a 30-nm chromatin fiber.
Yasumasa Joti, Takaaki Hikima, Yoshinori Nishino, Fukumi Kamada, Saera Hihara, Hideaki Takata, Tetsuya Ishikawa, Kazuhiro Maeshima. Nucleus 2012
86
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.