A citation-based method for searching scientific literature

Alexandra Mees, Tobias Klar, Petra Gnau, Ulrich Hennecke, Andre P M Eker, Thomas Carell, Lars-Oliver Essen. Science 2004
Times Cited: 268







List of co-cited articles
952 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Crystal structure of DNA photolyase from Escherichia coli.
H W Park, S T Kim, A Sancar, J Deisenhofer. Science 1995
396
43

Crystal structure and mechanism of a DNA (6-4) photolyase.
Melanie J Maul, Thomas R M Barends, Andreas F Glas, Max J Cryle, Tatiana Domratcheva, Sabine Schneider, Ilme Schlichting, Thomas Carell. Angew Chem Int Ed Engl 2008
139
38

Dynamics and mechanism of cyclobutane pyrimidine dimer repair by DNA photolyase.
Zheyun Liu, Chuang Tan, Xunmin Guo, Ya-Ting Kao, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong. Proc Natl Acad Sci U S A 2011
111
37

Direct observation of thymine dimer repair in DNA by photolyase.
Ya-Ting Kao, Chaitanya Saxena, Lijuan Wang, Aziz Sancar, Dongping Zhong. Proc Natl Acad Sci U S A 2005
174
35

The cryptochromes: blue light photoreceptors in plants and animals.
Inês Chaves, Richard Pokorny, Martin Byrdin, Nathalie Hoang, Thorsten Ritz, Klaus Brettel, Lars-Oliver Essen, Gijsbertus T J van der Horst, Alfred Batschauer, Margaret Ahmad. Annu Rev Plant Biol 2011
496
31

Crystal structures of an archaeal class II DNA photolyase and its complex with UV-damaged duplex DNA.
Stephan Kiontke, Yann Geisselbrecht, Richard Pokorny, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. EMBO J 2011
67
44

Dynamics and mechanism of repair of ultraviolet-induced (6-4) photoproduct by photolyase.
Jiang Li, Zheyun Liu, Chuang Tan, Xunmin Guo, Lijuan Wang, Aziz Sancar, Dongping Zhong. Nature 2010
138
28

Electron tunneling pathways and role of adenine in repair of cyclobutane pyrimidine dimer by DNA photolyase.
Zheyun Liu, Xunmin Guo, Chuang Tan, Jiang Li, Ya-Ting Kao, Lijuan Wang, Aziz Sancar, Dongping Zhong. J Am Chem Soc 2012
48
52

Reaction mechanism of (6-4) photolyase.
X Zhao, J Liu, D S Hsu, S Zhao, J S Taylor, A Sancar. J Biol Chem 1997
119
23


Kinetics of cyclobutane thymine dimer splitting by DNA photolyase directly monitored in the UV.
Viruthachalam Thiagarajan, Martin Byrdin, André P M Eker, Pavel Müller, Klaus Brettel. Proc Natl Acad Sci U S A 2011
53
41

Cis-syn thymidine dimer repair by DNA photolyase in real time.
Alexander W MacFarlane, Robert J Stanley. Biochemistry 2003
74
29

Repair of the (6-4) photoproduct by DNA photolyase requires two photons.
Junpei Yamamoto, Ryan Martin, Shigenori Iwai, Pascal Plaza, Klaus Brettel. Angew Chem Int Ed Engl 2013
40
52

Crystal structure of the T(6-4)C lesion in complex with a (6-4) DNA photolyase and repair of UV-induced (6-4) and Dewar photolesions.
Andreas F Glas, Sabine Schneider, Melanie J Maul, Ulrich Hennecke, Thomas Carell. Chemistry 2009
58
36


Crystal structure of DNA photolyase from Anacystis nidulans.
T Tamada, K Kitadokoro, Y Higuchi, K Inaka, A Yasui, P E de Ruiter, A P Eker, K Miki. Nat Struct Biol 1997
160
20

Role of two histidines in the (6-4) photolyase reaction.
K Hitomi, H Nakamura, S T Kim, T Mizukoshi, T Ishikawa, S Iwai, T Todo. J Biol Chem 2001
96
20

A new photoreactivating enzyme that specifically repairs ultraviolet light-induced (6-4)photoproducts.
T Todo, H Takemori, H Ryo, M Ihara, T Matsunaga, O Nikaido, K Sato, T Nomura. Nature 1993
224
20

Theoretical study on the repair mechanism of the (6-4) photolesion by the (6-4) photolyase.
Keyarash Sadeghian, Marco Bocola, Thomas Merz, Martin Schütz. J Am Chem Soc 2010
50
38

Dynamics and mechanisms of DNA repair by photolyase.
Zheyun Liu, Lijuan Wang, Dongping Zhong. Phys Chem Chem Phys 2015
46
39

UV-induced DNA damage and repair: a review.
Rajeshwar P Sinha, Donat P Häder. Photochem Photobiol Sci 2002
894
17

Intraprotein radical transfer during photoactivation of DNA photolyase.
C Aubert, M H Vos, P Mathis, A P Eker, K Brettel. Nature 2000
319
17

Recognition and repair of UV lesions in loop structures of duplex DNA by DASH-type cryptochrome.
Richard Pokorny, Tobias Klar, Ulrich Hennecke, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. Proc Natl Acad Sci U S A 2008
127
17

Reaction mechanisms of DNA photolyase.
Klaus Brettel, Martin Byrdin. Curr Opin Struct Biol 2010
112
17

Ultrafast dynamics of flavins in five redox states.
Ya-Ting Kao, Chaitanya Saxena, Ting-Fang He, Lijun Guo, Lijuan Wang, Aziz Sancar, Dongping Zhong. J Am Chem Soc 2008
151
16

Identification of a new cryptochrome class. Structure, function, and evolution.
Ronald Brudler, Kenichi Hitomi, Hiromi Daiyasu, Hiroyuki Toh, Ken-ichi Kucho, Masahiro Ishiura, Minoru Kanehisa, Victoria A Roberts, Takeshi Todo, John A Tainer,[...]. Mol Cell 2003
228
16

Dynamic determination of the functional state in photolyase and the implication for cryptochrome.
Zheyun Liu, Meng Zhang, Xunmin Guo, Chuang Tan, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong. Proc Natl Acad Sci U S A 2013
35
42

Light-driven DNA repair by photolyases.
L O Essen, T Klar. Cell Mol Life Sci 2006
111
15


Structural biology of DNA photolyases and cryptochromes.
Markus Müller, Thomas Carell. Curr Opin Struct Biol 2009
88
17

Crystal structure of cryptochrome 3 from Arabidopsis thaliana and its implications for photolyase activity.
Yihua Huang, Richard Baxter, Barbara S Smith, Carrie L Partch, Christopher L Colbert, Johann Deisenhofer. Proc Natl Acad Sci U S A 2006
93
16

Structure of the photolyase-like domain of cryptochrome 1 from Arabidopsis thaliana.
Chad A Brautigam, Barbara S Smith, Zhiquan Ma, Maya Palnitkar, Diana R Tomchick, Mischa Machius, Johann Deisenhofer. Proc Natl Acad Sci U S A 2004
218
15

Electron transfer mechanisms of DNA repair by photolyase.
Dongping Zhong. Annu Rev Phys Chem 2015
58
25

Crystal structure of a prokaryotic (6-4) photolyase with an Fe-S cluster and a 6,7-dimethyl-8-ribityllumazine antenna chromophore.
Fan Zhang, Patrick Scheerer, Inga Oberpichler, Tilman Lamparter, Norbert Krauß. Proc Natl Acad Sci U S A 2013
63
22

Ultrafast dynamics and anionic active states of the flavin cofactor in cryptochrome and photolyase.
Ya-Ting Kao, Chuang Tan, Sang-Hun Song, Nuri Oztürk, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong. J Am Chem Soc 2008
101
14


Photoselected electron transfer pathways in DNA photolyase.
Tatiana R Prytkova, David N Beratan, Spiros S Skourtis. Proc Natl Acad Sci U S A 2007
55
25


Structural and evolutionary aspects of antenna chromophore usage by class II photolyases.
Stephan Kiontke, Petra Gnau, Reinhard Haselsberger, Alfred Batschauer, Lars-Oliver Essen. J Biol Chem 2014
32
43

The molecular origin of high DNA-repair efficiency by photolyase.
Chuang Tan, Zheyun Liu, Jiang Li, Xunmin Guo, Lijuan Wang, Aziz Sancar, Dongping Zhong. Nat Commun 2015
35
40

Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes.
Kenichi Hitomi, Luciano DiTacchio, Andrew S Arvai, Junpei Yamamoto, Sang-Tae Kim, Takeshi Todo, John A Tainer, Shigenori Iwai, Satchidananda Panda, Elizabeth D Getzoff. Proc Natl Acad Sci U S A 2009
92
15

Discovery and functional analysis of a 4th electron-transferring tryptophan conserved exclusively in animal cryptochromes and (6-4) photolyases.
Pavel Müller, Junpei Yamamoto, Ryan Martin, Shigenori Iwai, Klaus Brettel. Chem Commun (Camb) 2015
74
18

CryB from Rhodobacter sphaeroides: a unique class of cryptochromes with new cofactors.
Yann Geisselbrecht, Sebastian Frühwirth, Claudia Schroeder, Antonio J Pierik, Gabriele Klug, Lars-Oliver Essen. EMBO Rep 2012
66
19

Cryptochrome 3 from Arabidopsis thaliana: structural and functional analysis of its complex with a folate light antenna.
Tobias Klar, Richard Pokorny, Julia Moldt, Alfred Batschauer, Lars-Oliver Essen. J Mol Biol 2007
62
20

Binding and catalytic properties of Xenopus (6-4) photolyase.
K Hitomi, S T Kim, S Iwai, N Harima, E Otoshi, M Ikenaga, T Todo. J Biol Chem 1997
89
14

Physicochemical mechanism of light-driven DNA repair by (6-4) photolyases.
Shirin Faraji, Andreas Dreuw. Annu Rev Phys Chem 2014
34
38

Determining complete electron flow in the cofactor photoreduction of oxidized photolyase.
Zheyun Liu, Chuang Tan, Xunmin Guo, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong. Proc Natl Acad Sci U S A 2013
72
18


Purification and characterization of a type III photolyase from Caulobacter crescentus.
Nuri Oztürk, Ya-Ting Kao, Christopher P Selby, I Halil Kavakli, Carrie L Partch, Dongping Zhong, Aziz Sancar. Biochemistry 2008
39
30


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.