A citation-based method for searching scientific literature

Gu Li, Marcia Levitus, Carlos Bustamante, Jonathan Widom. Nat Struct Mol Biol 2005
Times Cited: 444







List of co-cited articles
1198 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
71

Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.
Curt A Davey, David F Sargent, Karolin Luger, Armin W Maeder, Timothy J Richmond. J Mol Biol 2002
966
37


Nucleosomes facilitate their own invasion.
Gu Li, Jonathan Widom. Nat Struct Mol Biol 2004
257
32


Asymmetric unwrapping of nucleosomes under tension directed by DNA local flexibility.
Thuy T M Ngo, Qiucen Zhang, Ruobo Zhou, Jaya G Yodh, Taekjip Ha. Cell 2015
154
26

High-resolution dynamic mapping of histone-DNA interactions in a nucleosome.
Michael A Hall, Alla Shundrovsky, Lu Bai, Robert M Fulbright, John T Lis, Michelle D Wang. Nat Struct Mol Biol 2009
255
25

Dynamics of nucleosome invasion by DNA binding proteins.
Hannah S Tims, Kaushik Gurunathan, Marcia Levitus, Jonathan Widom. J Mol Biol 2011
86
24

Nucleosome accessibility governed by the dimer/tetramer interface.
Vera Böhm, Aaron R Hieb, Andrew J Andrews, Alexander Gansen, Andrea Rocker, Katalin Tóth, Karolin Luger, Jörg Langowski. Nucleic Acids Res 2011
135
20


The structure of DNA in the nucleosome core.
Timothy J Richmond, Curt A Davey. Nature 2003
775
19


Nucleosome structure and function.
Robert K McGinty, Song Tan. Chem Rev 2015
209
19

Histone octamer rearranges to adapt to DNA unwrapping.
Silvija Bilokapic, Mike Strauss, Mario Halic. Nat Struct Mol Biol 2018
79
24

A novel hybrid single molecule approach reveals spontaneous DNA motion in the nucleosome.
Sijie Wei, Samantha J Falk, Ben E Black, Tae-Hee Lee. Nucleic Acids Res 2015
39
41

Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions.
Alexey K Shaytan, Grigoriy A Armeev, Alexander Goncearenco, Victor B Zhurkin, David Landsman, Anna R Panchenko. J Mol Biol 2016
81
18

Effect of force on mononucleosomal dynamics.
Shirley Mihardja, Andrew J Spakowitz, Yongli Zhang, Carlos Bustamante. Proc Natl Acad Sci U S A 2006
136
15


Exploring the Free Energy Landscape of Nucleosomes.
Bin Zhang, Weihua Zheng, Garegin A Papoian, Peter G Wolynes. J Am Chem Soc 2016
64
23

Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming.
Abdenour Soufi, Meilin Fernandez Garcia, Artur Jaroszewicz, Nebiyu Osman, Matteo Pellegrini, Kenneth S Zaret. Cell 2015
356
15

Nucleosome structure(s) and stability: variations on a theme.
Andrew J Andrews, Karolin Luger. Annu Rev Biophys 2011
167
14

Asymmetric unwrapping of nucleosomal DNA propagates asymmetric opening and dissociation of the histone core.
Yujie Chen, Joshua M Tokuda, Traci Topping, Steve P Meisburger, Suzette A Pabit, Lisa M Gloss, Lois Pollack. Proc Natl Acad Sci U S A 2017
54
25

Nucleosomes undergo slow spontaneous gaping.
Thuy T M Ngo, Taekjip Ha. Nucleic Acids Res 2015
33
42

Histone fold modifications control nucleosome unwrapping and disassembly.
Marek Simon, Justin A North, John C Shimko, Robert A Forties, Michelle B Ferdinand, Mridula Manohar, Meng Zhang, Richard Fishel, Jennifer J Ottesen, Michael G Poirier. Proc Natl Acad Sci U S A 2011
127
14

Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure.
Xiaoyu Liu, Meijing Li, Xian Xia, Xueming Li, Zhucheng Chen. Nature 2017
122
13

Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.
Brent D Brower-Toland, Corey L Smith, Richard C Yeh, John T Lis, Craig L Peterson, Michelle D Wang. Proc Natl Acad Sci U S A 2002
305
13


Regulation of the nucleosome unwrapping rate controls DNA accessibility.
Justin A North, John C Shimko, Sarah Javaid, Alex M Mooney, Matthew A Shoffner, Sean D Rose, Ralf Bundschuh, Richard Fishel, Jennifer J Ottesen, Michael G Poirier. Nucleic Acids Res 2012
76
17

Cryo-EM study of the chromatin fiber reveals a double helix twisted by tetranucleosomal units.
Feng Song, Ping Chen, Dapeng Sun, Mingzhu Wang, Liping Dong, Dan Liang, Rui-Ming Xu, Ping Zhu, Guohong Li. Science 2014
338
12

X-ray structure of a tetranucleosome and its implications for the chromatin fibre.
Thomas Schalch, Sylwia Duda, David F Sargent, Timothy J Richmond. Nature 2005
506
12

Determinants of nucleosome positioning.
Kevin Struhl, Eran Segal. Nat Struct Mol Biol 2013
361
12

Nucleosome-Chd1 structure and implications for chromatin remodelling.
Lucas Farnung, Seychelle M Vos, Christoph Wigge, Patrick Cramer. Nature 2017
117
12

Histone H4-K16 acetylation controls chromatin structure and protein interactions.
Michael Shogren-Knaak, Haruhiko Ishii, Jian-Min Sun, Michael J Pazin, James R Davie, Craig L Peterson. Science 2006
12

The interaction landscape between transcription factors and the nucleosome.
Fangjie Zhu, Lucas Farnung, Eevi Kaasinen, Biswajyoti Sahu, Yimeng Yin, Bei Wei, Svetlana O Dodonova, Kazuhiro R Nitta, Ekaterina Morgunova, Minna Taipale,[...]. Nature 2018
96
12

The mechanics behind DNA sequence-dependent properties of the nucleosome.
Eugene Y D Chua, Dileep Vasudevan, Gabriela E Davey, Bin Wu, Curt A Davey. Nucleic Acids Res 2012
104
11

The biology of chromatin remodeling complexes.
Cedric R Clapier, Bradley R Cairns. Annu Rev Biochem 2009
11

Revealing transient structures of nucleosomes as DNA unwinds.
Yujie Chen, Joshua M Tokuda, Traci Topping, Julie L Sutton, Steve P Meisburger, Suzette A Pabit, Lisa M Gloss, Lois Pollack. Nucleic Acids Res 2014
45
24

Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II.
Courtney Hodges, Lacramioara Bintu, Lucyna Lubkowska, Mikhail Kashlev, Carlos Bustamante. Science 2009
245
11

Dynamics of nucleosome remodelling by individual ACF complexes.
Timothy R Blosser, Janet G Yang, Michael D Stone, Geeta J Narlikar, Xiaowei Zhuang. Nature 2009
133
11

Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes.
Brent Brower-Toland, David A Wacker, Robert M Fulbright, John T Lis, W Lee Kraus, Michelle D Wang. J Mol Biol 2005
134
11

Histone core modifications regulating nucleosome structure and dynamics.
Peter Tessarz, Tony Kouzarides. Nat Rev Mol Cell Biol 2014
489
11

In silico evidence for sequence-dependent nucleosome sliding.
Joshua Lequieu, David C Schwartz, Juan J de Pablo. Proc Natl Acad Sci U S A 2017
34
32

Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1.
Jan Bednar, Isabel Garcia-Saez, Ramachandran Boopathi, Amber R Cutter, Gabor Papai, Anna Reymer, Sajad H Syed, Imtiaz Nisar Lone, Ognyan Tonchev, Corinne Crucifix,[...]. Mol Cell 2017
119
11

Nucleosome structure and dynamics are coming of age.
Keda Zhou, Guillaume Gaullier, Karolin Luger. Nat Struct Mol Biol 2019
93
11

Chromatin Unfolding by Epigenetic Modifications Explained by Dramatic Impairment of Internucleosome Interactions: A Multiscale Computational Study.
Rosana Collepardo-Guevara, Guillem Portella, Michele Vendruscolo, Daan Frenkel, Tamar Schlick, Modesto Orozco. J Am Chem Soc 2015
78
12

Dynamics and function of compact nucleosome arrays.
Michael G Poirier, Eugene Oh, Hannah S Tims, Jonathan Widom. Nat Struct Mol Biol 2009
91
10

spFRET using alternating excitation and FCS reveals progressive DNA unwrapping in nucleosomes.
W J A Koopmans, R Buning, T Schmidt, J van Noort. Biophys J 2009
85
11

Structural analysis of the hexasome, lacking one histone H2A/H2B dimer from the conventional nucleosome.
Yasuhiro Arimura, Hiroaki Tachiwana, Takashi Oda, Mamoru Sato, Hitoshi Kurumizaka. Biochemistry 2012
63
15

New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?
Karolin Luger, Mekonnen L Dechassa, David J Tremethick. Nat Rev Mol Cell Biol 2012
388
10



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.