A citation-based method for searching scientific literature

Françoise Wyers, Mathieu Rougemaille, Gwenaël Badis, Jean-Claude Rousselle, Marie-Elisabeth Dufour, Jocelyne Boulay, Béatrice Régnault, Frédéric Devaux, Abdelkader Namane, Bertrand Séraphin, Domenico Libri, Alain Jacquier. Cell 2005
Times Cited: 650







List of co-cited articles
1171 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


RNA degradation by the exosome is promoted by a nuclear polyadenylation complex.
John LaCava, Jonathan Houseley, Cosmin Saveanu, Elisabeth Petfalski, Elizabeth Thompson, Alain Jacquier, David Tollervey. Cell 2005
667
58

A new yeast poly(A) polymerase complex involved in RNA quality control.
Stepánka Vanácová, Jeannette Wolf, Georges Martin, Diana Blank, Sabine Dettwiler, Arno Friedlein, Hanno Langen, Gérard Keith, Walter Keller. PLoS Biol 2005
451
39

Interaction profiling identifies the human nuclear exosome targeting complex.
Michal Lubas, Marianne S Christensen, Maiken S Kristiansen, Michal Domanski, Lasse G Falkenby, Søren Lykke-Andersen, Jens S Andersen, Andrzej Dziembowski, Torben Heick Jensen. Mol Cell 2011
258
35

Bidirectional promoters generate pervasive transcription in yeast.
Zhenyu Xu, Wu Wei, Julien Gagneur, Fabiana Perocchi, Sandra Clauder-Münster, Jurgi Camblong, Elisa Guffanti, Françoise Stutz, Wolfgang Huber, Lars M Steinmetz. Nature 2009
652
29


Extensive degradation of RNA precursors by the exosome in wild-type cells.
Rajani Kanth Gudipati, Zhenyu Xu, Alice Lebreton, Bertrand Séraphin, Lars M Steinmetz, Alain Jacquier, Domenico Libri. Mol Cell 2012
165
24

The regulation and functions of the nuclear RNA exosome complex.
Cornelia Kilchert, Sina Wittmann, Lidia Vasiljeva. Nat Rev Mol Cell Biol 2016
175
23


Transcriptome surveillance by selective termination of noncoding RNA synthesis.
Daniel Schulz, Bjoern Schwalb, Anja Kiesel, Carlo Baejen, Phillipp Torkler, Julien Gagneur, Johannes Soeding, Patrick Cramer. Cell 2013
133
23

Identification of a Nuclear Exosome Decay Pathway for Processed Transcripts.
Nicola Meola, Michal Domanski, Evdoxia Karadoulama, Yun Chen, Coline Gentil, Dennis Pultz, Kristoffer Vitting-Seerup, Søren Lykke-Andersen, Jens S Andersen, Albin Sandelin,[...]. Mol Cell 2016
113
23

Widespread bidirectional promoters are the major source of cryptic transcripts in yeast.
Helen Neil, Christophe Malabat, Yves d'Aubenton-Carafa, Zhenyu Xu, Lars M Steinmetz, Alain Jacquier. Nature 2009
427
22

Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex.
Debora Lika Makino, Marc Baumgärtner, Elena Conti. Nature 2013
156
22

RNA exosome depletion reveals transcription upstream of active human promoters.
Pascal Preker, Jesper Nielsen, Susanne Kammler, Søren Lykke-Andersen, Marianne S Christensen, Christophe K Mapendano, Mikkel H Schierup, Torben Heick Jensen. Science 2008
519
22

Transcriptome-wide analysis of exosome targets.
Claudia Schneider, Grzegorz Kudla, Wiebke Wlotzka, Alex Tuck, David Tollervey. Mol Cell 2012
135
21

Functions of the exosome in rRNA, snoRNA and snRNA synthesis.
C Allmang, J Kufel, G Chanfreau, P Mitchell, E Petfalski, D Tollervey. EMBO J 1999
453
20

The exosome-binding factors Rrp6 and Rrp47 form a composite surface for recruiting the Mtr4 helicase.
Benjamin Schuch, Monika Feigenbutz, Debora L Makino, Sebastian Falk, Claire Basquin, Phil Mitchell, Elena Conti. EMBO J 2014
67
28

Reconstitution, activities, and structure of the eukaryotic RNA exosome.
Quansheng Liu, Jaclyn C Greimann, Christopher D Lima. Cell 2006
397
19


XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.
E L van Dijk, C L Chen, Y d'Aubenton-Carafa, S Gourvennec, M Kwapisz, V Roche, C Bertrand, M Silvain, P Legoix-Né, S Loeillet,[...]. Nature 2011
247
18

Molecular basis for coordinating transcription termination with noncoding RNA degradation.
Agnieszka Tudek, Odil Porrua, Tomasz Kabzinski, Michael Lidschreiber, Karel Kubicek, Andrea Fortova, François Lacroute, Stepanka Vanacova, Patrick Cramer, Richard Stefl,[...]. Mol Cell 2014
68
25

Structure of the nuclear exosome captured on a maturing preribosome.
Jan Michael Schuller, Sebastian Falk, Lisa Fromm, Ed Hurt, Elena Conti. Science 2018
46
36

Helicase-Dependent RNA Decay Illuminated by a Cryo-EM Structure of a Human Nuclear RNA Exosome-MTR4 Complex.
Eva-Maria Weick, M Rhyan Puno, Kurt Januszyk, John C Zinder, Michael A DiMattia, Christopher D Lima. Cell 2018
53
32

Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA.
Elizabeth V Wasmuth, Kurt Januszyk, Christopher D Lima. Nature 2014
93
17

Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae.
Sujatha Kadaba, Anna Krueger, Tamyra Trice, Annette M Krecic, Alan G Hinnebusch, James Anderson. Genes Dev 2004
369
16

The Exosome Is Recruited to RNA Substrates through Specific Adaptor Proteins.
Matthias Thoms, Emma Thomson, Jochen Baßler, Marén Gnädig, Sabine Griesel, Ed Hurt. Cell 2015
112
16

Mpp6 Incorporation in the Nuclear Exosome Contributes to RNA Channeling through the Mtr4 Helicase.
Sebastian Falk, Fabien Bonneau, Judith Ebert, Alexander Kögel, Elena Conti. Cell Rep 2017
25
60


The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation.
Fabien Bonneau, Jérôme Basquin, Judith Ebert, Esben Lorentzen, Elena Conti. Cell 2009
181
15

RNA degradation paths in a 12-subunit nuclear exosome complex.
Debora Lika Makino, Benjamin Schuch, Elisabeth Stegmann, Marc Baumgärtner, Claire Basquin, Elena Conti. Nature 2015
88
17

A single subunit, Dis3, is essentially responsible for yeast exosome core activity.
Andrzej Dziembowski, Esben Lorentzen, Elena Conti, Bertrand Séraphin. Nat Struct Mol Biol 2007
317
15

An Mtr4/ZFC3H1 complex facilitates turnover of unstable nuclear RNAs to prevent their cytoplasmic transport and global translational repression.
Koichi Ogami, Patricia Richard, Yaqiong Chen, Mainul Hoque, Wencheng Li, James J Moresco, John R Yates, Bin Tian, James L Manley. Genes Dev 2017
49
30


Threading the barrel of the RNA exosome.
Claudia Schneider, David Tollervey. Trends Biochem Sci 2013
82
17

The human nuclear exosome targeting complex is loaded onto newly synthesized RNA to direct early ribonucleolysis.
Michal Lubas, Peter Refsing Andersen, Aleks Schein, Andrzej Dziembowski, Grzegorz Kudla, Torben Heick Jensen. Cell Rep 2015
103
14

Transcription of two long noncoding RNAs mediates mating-type control of gametogenesis in budding yeast.
Folkert J van Werven, Gregor Neuert, Natalie Hendrick, Aurélie Lardenois, Stephen Buratowski, Alexander van Oudenaarden, Michael Primig, Angelika Amon. Cell 2012
167
14


Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance.
Marilyne Thiebaut, Elena Kisseleva-Romanova, Mathieu Rougemaille, Jocelyne Boulay, Domenico Libri. Mol Cell 2006
187
14

The human cap-binding complex is functionally connected to the nuclear RNA exosome.
Peter Refsing Andersen, Michal Domanski, Maiken S Kristiansen, Helena Storvall, Evgenia Ntini, Celine Verheggen, Aleks Schein, Jakob Bunkenborg, Ina Poser, Marie Hallais,[...]. Nat Struct Mol Biol 2013
142
14

The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L.
Rafal Tomecki, Maiken S Kristiansen, Søren Lykke-Andersen, Aleksander Chlebowski, Katja M Larsen, Roman J Szczesny, Karolina Drazkowska, Agnieszka Pastula, Jens S Andersen, Piotr P Stepien,[...]. EMBO J 2010
164
14

The molecular architecture of the TRAMP complex reveals the organization and interplay of its two catalytic activities.
Sebastian Falk, John R Weir, Jendrik Hentschel, Peter Reichelt, Fabien Bonneau, Elena Conti. Mol Cell 2014
46
30

Dealing with pervasive transcription.
Torben Heick Jensen, Alain Jacquier, Domenico Libri. Mol Cell 2013
170
13

Structure and reconstitution of yeast Mpp6-nuclear exosome complexes reveals that Mpp6 stimulates RNA decay and recruits the Mtr4 helicase.
Elizabeth V Wasmuth, John C Zinder, Dimitrios Zattas, Mom Das, Christopher D Lima. Elife 2017
25
52

The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases.
C Allmang, E Petfalski, A Podtelejnikov, M Mann, D Tollervey, P Mitchell. Genes Dev 1999
360
13

Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6.
Aurélie Lardenois, Yuchen Liu, Thomas Walther, Frédéric Chalmel, Bertrand Evrard, Marina Granovskaia, Angela Chu, Ronald W Davis, Lars M Steinmetz, Michael Primig. Proc Natl Acad Sci U S A 2011
94
13


RNA decay machines: the exosome.
Aleksander Chlebowski, Michał Lubas, Torben Heick Jensen, Andrzej Dziembowski. Biochim Biophys Acta 2013
150
13

Endonucleolytic RNA cleavage by a eukaryotic exosome.
Alice Lebreton, Rafal Tomecki, Andrzej Dziembowski, Bertrand Séraphin. Nature 2008
238
13

Structural analysis reveals the characteristic features of Mtr4, a DExH helicase involved in nuclear RNA processing and surveillance.
John R Weir, Fabien Bonneau, Jendrik Hentschel, Elena Conti. Proc Natl Acad Sci U S A 2010
101
13

Structural insights into the interaction of the nuclear exosome helicase Mtr4 with the preribosomal protein Nop53.
Sebastian Falk, Jan-Niklas Tants, Jerôme Basquin, Matthias Thoms, Ed Hurt, Michael Sattler, Elena Conti. RNA 2017
24
54

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.