A citation-based method for searching scientific literature


List of co-cited articles
763 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
19

High-resolution comparative analysis of great ape genomes.
Zev N Kronenberg, Ian T Fiddes, David Gordon, Shwetha Murali, Stuart Cantsilieris, Olivia S Meyerson, Jason G Underwood, Bradley J Nelson, Mark J P Chaisson, Max L Dougherty,[...]. Science 2018
150
18

Comparative and demographic analysis of orang-utan genomes.
Devin P Locke, LaDeana W Hillier, Wesley C Warren, Kim C Worley, Lynne V Nazareth, Donna M Muzny, Shiaw-Pyng Yang, Zhengyuan Wang, Asif T Chinwalla, Pat Minx,[...]. Nature 2011
328
17

Insights into hominid evolution from the gorilla genome sequence.
Aylwyn Scally, Julien Y Dutheil, LaDeana W Hillier, Gregory E Jordan, Ian Goodhead, Javier Herrero, Asger Hobolth, Tuuli Lappalainen, Thomas Mailund, Tomas Marques-Bonet,[...]. Nature 2012
401
17

Evolutionary and biomedical insights from the rhesus macaque genome.
Richard A Gibbs, Jeffrey Rogers, Michael G Katze, Roger Bumgarner, George M Weinstock, Elaine R Mardis, Karin A Remington, Robert L Strausberg, J Craig Venter, Richard K Wilson,[...]. Science 2007
935
17

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
14

The complete genome sequence of a Neanderthal from the Altai Mountains.
Kay Prüfer, Fernando Racimo, Nick Patterson, Flora Jay, Sriram Sankararaman, Susanna Sawyer, Anja Heinze, Gabriel Renaud, Peter H Sudmant, Cesare de Filippo,[...]. Nature 2014
904
13

Human-specific loss of regulatory DNA and the evolution of human-specific traits.
Cory Y McLean, Philip L Reno, Alex A Pollen, Abraham I Bassan, Terence D Capellini, Catherine Guenther, Vahan B Indjeian, Xinhong Lim, Douglas B Menke, Bruce T Schaar,[...]. Nature 2011
267
12

Great ape genetic diversity and population history.
Javier Prado-Martinez, Peter H Sudmant, Jeffrey M Kidd, Heng Li, Joanna L Kelley, Belen Lorente-Galdos, Krishna R Veeramah, August E Woerner, Timothy D O'Connor, Gabriel Santpere,[...]. Nature 2013
450
12


Initial sequencing and comparative analysis of the mouse genome.
Robert H Waterston, Kerstin Lindblad-Toh, Ewan Birney, Jane Rogers, Josep F Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An,[...]. Nature 2002
11

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.
Swapan Mallick, Heng Li, Mark Lipson, Iain Mathieson, Melissa Gymrek, Fernando Racimo, Mengyao Zhao, Niru Chennagiri, Susanne Nordenfelt, Arti Tandon,[...]. Nature 2016
555
11

Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion.
Marta Florio, Mareike Albert, Elena Taverna, Takashi Namba, Holger Brandl, Eric Lewitus, Christiane Haffner, Alex Sykes, Fong Kuan Wong, Jula Peters,[...]. Science 2015
299
10

A high-coverage genome sequence from an archaic Denisovan individual.
Matthias Meyer, Martin Kircher, Marie-Theres Gansauge, Heng Li, Fernando Racimo, Swapan Mallick, Joshua G Schraiber, Flora Jay, Kay Prüfer, Cesare de Filippo,[...]. Science 2012
874
10

Long-read sequence assembly of the gorilla genome.
David Gordon, John Huddleston, Mark J P Chaisson, Christopher M Hill, Zev N Kronenberg, Katherine M Munson, Maika Malig, Archana Raja, Ian Fiddes, LaDeana W Hillier,[...]. Science 2016
200
10

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
10


Inhibition of SRGAP2 function by its human-specific paralogs induces neoteny during spine maturation.
Cécile Charrier, Kaumudi Joshi, Jaeda Coutinho-Budd, Ji-Eun Kim, Nelle Lambert, Jacqueline de Marchena, Wei-Lin Jin, Pierre Vanderhaeghen, Anirvan Ghosh, Takayuki Sassa,[...]. Cell 2012
223
9

The bonobo genome compared with the chimpanzee and human genomes.
Kay Prüfer, Kasper Munch, Ines Hellmann, Keiko Akagi, Jason R Miller, Brian Walenz, Sergey Koren, Granger Sutton, Chinnappa Kodira, Roger Winer,[...]. Nature 2012
246
9

Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution.
Alex A Pollen, Aparna Bhaduri, Madeline G Andrews, Tomasz J Nowakowski, Olivia S Meyerson, Mohammed A Mostajo-Radji, Elizabeth Di Lullo, Beatriz Alvarado, Melanie Bedolli, Max L Dougherty,[...]. Cell 2019
189
9

Chimpanzee genomic diversity reveals ancient admixture with bonobos.
Marc de Manuel, Martin Kuhlwilm, Peter Frandsen, Vitor C Sousa, Tariq Desai, Javier Prado-Martinez, Jessica Hernandez-Rodriguez, Isabelle Dupanloup, Oscar Lao, Pille Hallast,[...]. Science 2016
111
9

Evolution and diversity of copy number variation in the great ape lineage.
Peter H Sudmant, John Huddleston, Claudia R Catacchio, Maika Malig, Ladeana W Hillier, Carl Baker, Kiana Mohajeri, Ivanela Kondova, Ronald E Bontrop, Stephan Persengiev,[...]. Genome Res 2013
87
9

GENCODE reference annotation for the human and mouse genomes.
Adam Frankish, Mark Diekhans, Anne-Maud Ferreira, Rory Johnson, Irwin Jungreis, Jane Loveland, Jonathan M Mudge, Cristina Sisu, James Wright, Joel Armstrong,[...]. Nucleic Acids Res 2019
989
8

A draft sequence of the Neandertal genome.
Richard E Green, Johannes Krause, Adrian W Briggs, Tomislav Maricic, Udo Stenzel, Martin Kircher, Nick Patterson, Heng Li, Weiwei Zhai, Markus Hsi-Yang Fritz,[...]. Science 2010
8


Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis.
Ian T Fiddes, Gerrald A Lodewijk, Meghan Mooring, Colleen M Bosworth, Adam D Ewing, Gary L Mantalas, Adam M Novak, Anouk van den Bout, Alex Bishara, Jimi L Rosenkrantz,[...]. Cell 2018
195
8

Evolution of the Human Nervous System Function, Structure, and Development.
André M M Sousa, Kyle A Meyer, Gabriel Santpere, Forrest O Gulden, Nenad Sestan. Cell 2017
143
7

A second generation human haplotype map of over 3.1 million SNPs.
Kelly A Frazer, Dennis G Ballinger, David R Cox, David A Hinds, Laura L Stuve, Richard A Gibbs, John W Belmont, Andrew Boudreau, Paul Hardenbol, Suzanne M Leal,[...]. Nature 2007
7

An RNA gene expressed during cortical development evolved rapidly in humans.
Katherine S Pollard, Sofie R Salama, Nelle Lambert, Marie-Alexandra Lambot, Sandra Coppens, Jakob S Pedersen, Sol Katzman, Bryan King, Courtney Onodera, Adam Siepel,[...]. Nature 2006
569
7


The evolution of gene expression levels in mammalian organs.
David Brawand, Magali Soumillon, Anamaria Necsulea, Philippe Julien, Gábor Csárdi, Patrick Harrigan, Manuela Weier, Angélica Liechti, Ayinuer Aximu-Petri, Martin Kircher,[...]. Nature 2011
705
7


Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication.
Megan Y Dennis, Xander Nuttle, Peter H Sudmant, Francesca Antonacci, Tina A Graves, Mikhail Nefedov, Jill A Rosenfeld, Saba Sajjadian, Maika Malig, Holland Kotkiewicz,[...]. Cell 2012
202
6

The human genome browser at UCSC.
W James Kent, Charles W Sugnet, Terrence S Furey, Krishna M Roskin, Tom H Pringle, Alan M Zahler, David Haussler. Genome Res 2002
6

Comprehensive identification and analysis of human accelerated regulatory DNA.
Rachel M Gittelman, Enna Hun, Ferhat Ay, Jennifer Madeoy, Len Pennacchio, William S Noble, R David Hawkins, Joshua M Akey. Genome Res 2015
48
12

The evolution and population diversity of human-specific segmental duplications.
Megan Y Dennis, Lana Harshman, Bradley J Nelson, Osnat Penn, Stuart Cantsilieris, John Huddleston, Francesca Antonacci, Kelsi Penewit, Laura Denman, Archana Raja,[...]. Nat Ecol Evol 2017
66
9

A high-coverage Neandertal genome from Vindija Cave in Croatia.
Kay Prüfer, Cesare de Filippo, Steffi Grote, Fabrizio Mafessoni, Petra Korlević, Mateja Hajdinjak, Benjamin Vernot, Laurits Skov, Pinghsun Hsieh, Stéphane Peyrégne,[...]. Science 2017
206
6

A humanized version of Foxp2 affects cortico-basal ganglia circuits in mice.
Wolfgang Enard, Sabine Gehre, Kurt Hammerschmidt, Sabine M Hölter, Torsten Blass, Mehmet Somel, Martina K Brückner, Christiane Schreiweis, Christine Winter, Reinhard Sohr,[...]. Cell 2009
285
6

A high-resolution map of human evolutionary constraint using 29 mammals.
Kerstin Lindblad-Toh, Manuel Garber, Or Zuk, Michael F Lin, Brian J Parker, Stefan Washietl, Pouya Kheradpour, Jason Ernst, Gregory Jordan, Evan Mauceli,[...]. Nature 2011
689
6


BLAT--the BLAST-like alignment tool.
W James Kent. Genome Res 2002
6


Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
6

Human-Specific NOTCH2NL Genes Expand Cortical Neurogenesis through Delta/Notch Regulation.
Ikuo K Suzuki, David Gacquer, Roxane Van Heurck, Devesh Kumar, Marta Wojno, Angéline Bilheu, Adèle Herpoel, Nelle Lambert, Julian Cheron, Franck Polleux,[...]. Cell 2018
153
6

Spatiotemporal transcriptomic divergence across human and macaque brain development.
Ying Zhu, André M M Sousa, Tianliuyun Gao, Mario Skarica, Mingfeng Li, Gabriel Santpere, Paula Esteller-Cucala, David Juan, Luis Ferrández-Peral, Forrest O Gulden,[...]. Science 2018
114
6

Gibbon genome and the fast karyotype evolution of small apes.
Lucia Carbone, R Alan Harris, Sante Gnerre, Krishna R Veeramah, Belen Lorente-Galdos, John Huddleston, Thomas J Meyer, Javier Herrero, Christian Roos, Bronwen Aken,[...]. Nature 2014
161
6


Enhancer divergence and cis-regulatory evolution in the human and chimp neural crest.
Sara L Prescott, Rajini Srinivasan, Maria Carolina Marchetto, Irina Grishina, Iñigo Narvaiza, Licia Selleri, Fred H Gage, Tomek Swigut, Joanna Wysocka. Cell 2015
162
5

Transposable elements have rewired the core regulatory network of human embryonic stem cells.
Galih Kunarso, Na-Yu Chia, Justin Jeyakani, Catalina Hwang, Xinyi Lu, Yun-Shen Chan, Huck-Hui Ng, Guillaume Bourque. Nat Genet 2010
488
5

A burst of segmental duplications in the genome of the African great ape ancestor.
Tomas Marques-Bonet, Jeffrey M Kidd, Mario Ventura, Tina A Graves, Ze Cheng, LaDeana W Hillier, Zhaoshi Jiang, Carl Baker, Ray Malfavon-Borja, Lucinda A Fulton,[...]. Nature 2009
146
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.