A citation-based method for searching scientific literature

Ulrich Stelzl, Uwe Worm, Maciej Lalowski, Christian Haenig, Felix H Brembeck, Heike Goehler, Martin Stroedicke, Martina Zenkner, Anke Schoenherr, Susanne Koeppen, Jan Timm, Sascha Mintzlaff, Claudia Abraham, Nicole Bock, Silvia Kietzmann, Astrid Goedde, Engin Toksöz, Anja Droege, Sylvia Krobitsch, Bernhard Korn, Walter Birchmeier, Hans Lehrach, Erich E Wanker. Cell 2005
Times Cited: 1593







List of co-cited articles
593 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Towards a proteome-scale map of the human protein-protein interaction network.
Jean-François Rual, Kavitha Venkatesan, Tong Hao, Tomoko Hirozane-Kishikawa, Amélie Dricot, Ning Li, Gabriel F Berriz, Francis D Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou,[...]. Nature 2005
23

STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Damian Szklarczyk, Annika L Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T Doncheva, John H Morris, Peer Bork,[...]. Nucleic Acids Res 2019
14

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
14

A reference map of the human binary protein interactome.
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J Campos-Laborie, Benoit Charloteaux,[...]. Nature 2020
321
13

Human Protein Reference Database--2009 update.
T S Keshava Prasad, Renu Goel, Kumaran Kandasamy, Shivakumar Keerthikumar, Sameer Kumar, Suresh Mathivanan, Deepthi Telikicherla, Rajesh Raju, Beema Shafreen, Abhilash Venugopal,[...]. Nucleic Acids Res 2009
12

MINT, the molecular interaction database: 2012 update.
Luana Licata, Leonardo Briganti, Daniele Peluso, Livia Perfetto, Marta Iannuccelli, Eugenia Galeota, Francesca Sacco, Anita Palma, Aurelio Pio Nardozza, Elena Santonico,[...]. Nucleic Acids Res 2012
659
11

An empirical framework for binary interactome mapping.
Kavitha Venkatesan, Jean-François Rual, Alexei Vazquez, Ulrich Stelzl, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Martina Zenkner, Xiaofeng Xin, Kwang-Il Goh,[...]. Nat Methods 2009
573
10

A proteome-scale map of the human interactome network.
Thomas Rolland, Murat Taşan, Benoit Charloteaux, Samuel J Pevzner, Quan Zhong, Nidhi Sahni, Song Yi, Irma Lemmens, Celia Fontanillo, Roberto Mosca,[...]. Cell 2014
802
10

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
M Ashburner, C A Ball, J A Blake, D Botstein, H Butler, J M Cherry, A P Davis, K Dolinski, S S Dwight, J T Eppig,[...]. Nat Genet 2000
10

Network biology: understanding the cell's functional organization.
Albert-László Barabási, Zoltán N Oltvai. Nat Rev Genet 2004
10

Lethality and centrality in protein networks.
H Jeong, S P Mason, A L Barabási, Z N Oltvai. Nature 2001
10

Network medicine: a network-based approach to human disease.
Albert-László Barabási, Natali Gulbahce, Joseph Loscalzo. Nat Rev Genet 2011
9

The Database of Interacting Proteins: 2004 update.
Lukasz Salwinski, Christopher S Miller, Adam J Smith, Frank K Pettit, James U Bowie, David Eisenberg. Nucleic Acids Res 2004
9

The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.
Sandra Orchard, Mais Ammari, Bruno Aranda, Lionel Breuza, Leonardo Briganti, Fiona Broackes-Carter, Nancy H Campbell, Gayatri Chavali, Carol Chen, Noemi del-Toro,[...]. Nucleic Acids Res 2014
9

Disease networks. Uncovering disease-disease relationships through the incomplete interactome.
Jörg Menche, Amitabh Sharma, Maksim Kitsak, Susan Dina Ghiassian, Marc Vidal, Joseph Loscalzo, Albert-László Barabási. Science 2015
702
8

STRING: a database of predicted functional associations between proteins.
Christian von Mering, Martijn Huynen, Daniel Jaeggi, Steffen Schmidt, Peer Bork, Berend Snel. Nucleic Acids Res 2003
8

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae.
P Uetz, L Giot, G Cagney, T A Mansfield, R S Judson, J R Knight, D Lockshon, V Narayan, M Srinivasan, P Pochart,[...]. Nature 2000
7

KEGG: kyoto encyclopedia of genes and genomes.
M Kanehisa, S Goto. Nucleic Acids Res 2000
7

Architecture of the human interactome defines protein communities and disease networks.
Edward L Huttlin, Raphael J Bruckner, Joao A Paulo, Joe R Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P Gygi, Hannah Parzen,[...]. Nature 2017
734
7

Computing topological parameters of biological networks.
Yassen Assenov, Fidel Ramírez, Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht. Bioinformatics 2008
7

Emergence of scaling in random networks
Barabasi, Albert. Science 1999
6

The BioGRID interaction database: 2019 update.
Rose Oughtred, Chris Stark, Bobby-Joe Breitkreutz, Jennifer Rust, Lorrie Boucher, Christie Chang, Nadine Kolas, Lara O'Donnell, Genie Leung, Rochelle McAdam,[...]. Nucleic Acids Res 2019
633
6



The human disease network.
Kwang-Il Goh, Michael E Cusick, David Valle, Barton Childs, Marc Vidal, Albert-László Barabási. Proc Natl Acad Sci U S A 2007
6

STRING v10: protein-protein interaction networks, integrated over the tree of life.
Damian Szklarczyk, Andrea Franceschini, Stefan Wyder, Kristoffer Forslund, Davide Heller, Jaime Huerta-Cepas, Milan Simonovic, Alexander Roth, Alberto Santos, Kalliopi P Tsafou,[...]. Nucleic Acids Res 2015
6

High-quality binary protein interaction map of the yeast interactome network.
Haiyuan Yu, Pascal Braun, Muhammed A Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis,[...]. Science 2008
896
6

Large-scale mapping of human protein-protein interactions by mass spectrometry.
Rob M Ewing, Peter Chu, Fred Elisma, Hongyan Li, Paul Taylor, Shane Climie, Linda McBroom-Cerajewski, Mark D Robinson, Liam O'Connor, Michael Li,[...]. Mol Syst Biol 2007
678
6

A human interactome in three quantitative dimensions organized by stoichiometries and abundances.
Marco Y Hein, Nina C Hubner, Ina Poser, Jürgen Cox, Nagarjuna Nagaraj, Yusuke Toyoda, Igor A Gak, Ina Weisswange, Jörg Mansfeld, Frank Buchholz,[...]. Cell 2015
746
6

Collective dynamics of 'small-world' networks.
D J Watts, S H Strogatz. Nature 1998
6

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
6

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
Ron Edgar, Michael Domrachev, Alex E Lash. Nucleic Acids Res 2002
5

DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants.
Janet Piñero, Àlex Bravo, Núria Queralt-Rosinach, Alba Gutiérrez-Sacristán, Jordi Deu-Pons, Emilio Centeno, Javier García-García, Ferran Sanz, Laura I Furlong. Nucleic Acids Res 2017
5

node2vec: Scalable Feature Learning for Networks.
Aditya Grover, Jure Leskovec. KDD 2016
533
5

KEGG: new perspectives on genomes, pathways, diseases and drugs.
Minoru Kanehisa, Miho Furumichi, Mao Tanabe, Yoko Sato, Kanae Morishima. Nucleic Acids Res 2017
5


A comprehensive two-hybrid analysis to explore the yeast protein interactome.
T Ito, T Chiba, R Ozawa, M Yoshida, M Hattori, Y Sakaki. Proc Natl Acad Sci U S A 2001
5

Evidence for dynamically organized modularity in the yeast protein-protein interaction network.
Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha J M Walhout, Michael E Cusick, Frederick P Roth,[...]. Nature 2004
5

HIPPIE v2.0: enhancing meaningfulness and reliability of protein-protein interaction networks.
Gregorio Alanis-Lobato, Miguel A Andrade-Navarro, Martin H Schaefer. Nucleic Acids Res 2017
200
5


The large-scale organization of metabolic networks.
H Jeong, B Tombor, R Albert, Z N Oltvai, A L Barabási. Nature 2000
5

Proteome survey reveals modularity of the yeast cell machinery.
Anne-Claude Gavin, Patrick Aloy, Paola Grandi, Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars Juhl Jensen, Sonja Bastuck, Birgit Dümpelfeld,[...]. Nature 2006
5


Functional and topological characterization of protein interaction networks.
Soon-Hyung Yook, Zoltán N Oltvai, Albert-László Barabási. Proteomics 2004
313
5

From molecular to modular cell biology.
L H Hartwell, J J Hopfield, S Leibler, A W Murray. Nature 1999
5

Functional organization of the yeast proteome by systematic analysis of protein complexes.
Anne-Claude Gavin, Markus Bösche, Roland Krause, Paola Grandi, Martina Marzioch, Andreas Bauer, Jörg Schultz, Jens M Rick, Anne-Marie Michon, Cristina-Maria Cruciat,[...]. Nature 2002
5

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
5

Estimating the size of the human interactome.
Michael P H Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong Jun An, Michael Lappe, Carsten Wiuf. Proc Natl Acad Sci U S A 2008
432
5

The BioGRID interaction database: 2015 update.
Andrew Chatr-Aryamontri, Bobby-Joe Breitkreutz, Rose Oughtred, Lorrie Boucher, Sven Heinicke, Daici Chen, Chris Stark, Ashton Breitkreutz, Nadine Kolas, Lara O'Donnell,[...]. Nucleic Acids Res 2015
627
5

Comparative assessment of large-scale data sets of protein-protein interactions.
Christian von Mering, Roland Krause, Berend Snel, Michael Cornell, Stephen G Oliver, Stanley Fields, Peer Bork. Nature 2002
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.