Victoria Portnoy, Elena Evguenieva-Hackenberg, Franziska Klein, Pamela Walter, Esben Lorentzen, Gabriele Klug, Gadi Schuster. EMBO Rep 2005
Times Cited: 72
Times Cited: 72
Times Cited
Times Co-cited
Similarity
The archaeal exosome core is a hexameric ring structure with three catalytic subunits.
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Structural framework for the mechanism of archaeal exosomes in RNA processing.
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An exosome-like complex in Sulfolobus solfataricus.
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The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases.
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P Mitchell, E Petfalski, A Shevchenko, M Mann, D Tollervey. Cell 1997
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RNA polyadenylation and degradation in different Archaea; roles of the exosome and RNase R.
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Polynucleotide phosphorylase functions both as a 3' right-arrow 5' exonuclease and a poly(A) polymerase in Escherichia coli.
B K Mohanty, S R Kushner. Proc Natl Acad Sci U S A 2000
B K Mohanty, S R Kushner. Proc Natl Acad Sci U S A 2000
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Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach.
E V Koonin, Y I Wolf, L Aravind. Genome Res 2001
E V Koonin, Y I Wolf, L Aravind. Genome Res 2001
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A single subunit, Dis3, is essentially responsible for yeast exosome core activity.
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Reconstitution, activities, and structure of the eukaryotic RNA exosome.
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Quansheng Liu, Jaclyn C Greimann, Christopher D Lima. Cell 2006
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A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation.
M F Symmons, G H Jones, B F Luisi. Structure 2000
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RNA channelling by the archaeal exosome.
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RNA degradation by the exosome is promoted by a nuclear polyadenylation complex.
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John LaCava, Jonathan Houseley, Cosmin Saveanu, Elisabeth Petfalski, Elizabeth Thompson, Alain Jacquier, David Tollervey. Cell 2005
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Structural basis of 3' end RNA recognition and exoribonucleolytic cleavage by an exosome RNase PH core.
Esben Lorentzen, Elena Conti. Mol Cell 2005
Esben Lorentzen, Elena Conti. Mol Cell 2005
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Characterization of native and reconstituted exosome complexes from the hyperthermophilic archaeon Sulfolobus solfataricus.
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Pamela Walter, Franziska Klein, Esben Lorentzen, Anne Ilchmann, Gabriele Klug, Elena Evguenieva-Hackenberg. Mol Microbiol 2006
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RNA-quality control by the exosome.
Jonathan Houseley, John LaCava, David Tollervey. Nat Rev Mol Cell Biol 2006
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A new yeast poly(A) polymerase complex involved in RNA quality control.
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Running rings around RNA: a superfamily of phosphate-dependent RNases.
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Martyn F Symmons, Mark G Williams, Ben F Luisi, George H Jones, Agamemnon J Carpousis. Trends Biochem Sci 2002
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Insights into the mechanism of progressive RNA degradation by the archaeal exosome.
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Polynucleotide phosphorylase functions as both an exonuclease and a poly(A) polymerase in spinach chloroplasts.
S Yehudai-Resheff, M Hirsh, G Schuster. Mol Cell Biol 2001
S Yehudai-Resheff, M Hirsh, G Schuster. Mol Cell Biol 2001
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RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from Escherichia coli.
Ruth Rott, Gadi Zipor, Victoria Portnoy, Varda Liveanu, Gadi Schuster. J Biol Chem 2003
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Protein complexes in the archaeon Methanothermobacter thermautotrophicus analyzed by blue native/SDS-PAGE and mass spectrometry.
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The Pyrococcus exosome complex: structural and functional characterization.
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Celso Raul Romero Ramos, Cristiano L P Oliveira, Iris L Torriani, Carla Columbano Oliveira. J Biol Chem 2006
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The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli.
Bijoy K Mohanty, Valerie F Maples, Sidney R Kushner. Mol Microbiol 2004
Bijoy K Mohanty, Valerie F Maples, Sidney R Kushner. Mol Microbiol 2004
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Domain analysis of the chloroplast polynucleotide phosphorylase reveals discrete functions in RNA degradation, polyadenylation, and sequence homology with exosome proteins.
Shlomit Yehudai-Resheff, Victoria Portnoy, Sivan Yogev, Noam Adir, Gadi Schuster. Plant Cell 2003
Shlomit Yehudai-Resheff, Victoria Portnoy, Sivan Yogev, Noam Adir, Gadi Schuster. Plant Cell 2003
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Polynucleotide phosphorylase and the archaeal exosome as poly(A)-polymerases.
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Shimyn Slomovic, Victoria Portnoy, Shlomit Yehudai-Resheff, Ela Bronshtein, Gadi Schuster. Biochim Biophys Acta 2008
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Exoribonuclease superfamilies: structural analysis and phylogenetic distribution.
Y Zuo, M P Deutscher. Nucleic Acids Res 2001
Y Zuo, M P Deutscher. Nucleic Acids Res 2001
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Rrp4 and Csl4 are needed for efficient degradation but not for polyadenylation of synthetic and natural RNA by the archaeal exosome.
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Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.
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20
Functions of the exosome in rRNA, snoRNA and snRNA synthesis.
C Allmang, J Kufel, G Chanfreau, P Mitchell, E Petfalski, D Tollervey. EMBO J 1999
C Allmang, J Kufel, G Chanfreau, P Mitchell, E Petfalski, D Tollervey. EMBO J 1999
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The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases.
C Allmang, E Petfalski, A Podtelejnikov, M Mann, D Tollervey, P Mitchell. Genes Dev 1999
C Allmang, E Petfalski, A Podtelejnikov, M Mann, D Tollervey, P Mitchell. Genes Dev 1999
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5'-to-3' exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA.
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Nathalie Mathy, Lionel Bénard, Olivier Pellegrini, Roula Daou, Tingyi Wen, Ciarán Condon. Cell 2007
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Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E.
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Sergine Even, Olivier Pellegrini, Lena Zig, Valerie Labas, Joelle Vinh, Dominique Bréchemmier-Baey, Harald Putzer. Nucleic Acids Res 2005
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The complete genome of the crenarchaeon Sulfolobus solfataricus P2.
Q She, R K Singh, F Confalonieri, Y Zivanovic, G Allard, M J Awayez, C C Chan-Weiher, I G Clausen, B A Curtis, A De Moors,[...]. Proc Natl Acad Sci U S A 2001
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16
The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities.
Daneen Schaeffer, Borislava Tsanova, Ana Barbas, Filipa Pereira Reis, Eeshita Ghosh Dastidar, Maya Sanchez-Rotunno, Cecília Maria Arraiano, Ambro van Hoof. Nat Struct Mol Biol 2009
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Polyadenylation and degradation of human mitochondrial RNA: the prokaryotic past leaves its mark.
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Shimyn Slomovic, David Laufer, Dan Geiger, Gadi Schuster. Mol Cell Biol 2005
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Arabidopsis thaliana exosome subunit AtRrp4p is a hydrolytic 3'-->5' exonuclease containing S1 and KH RNA-binding domains.
Julia A Chekanova, James A Dutko, I Saira Mian, Dmitry A Belostotsky. Nucleic Acids Res 2002
Julia A Chekanova, James A Dutko, I Saira Mian, Dmitry A Belostotsky. Nucleic Acids Res 2002
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The exosome and the proteasome: nano-compartments for degradation.
Esben Lorentzen, Elena Conti. Cell 2006
Esben Lorentzen, Elena Conti. Cell 2006
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The exosome: a macromolecular cage for controlled RNA degradation.
Katharina Büttner, Katja Wenig, Karl-Peter Hopfner. Mol Microbiol 2006
Katharina Büttner, Katja Wenig, Karl-Peter Hopfner. Mol Microbiol 2006
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Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal.
Helena Celesnik, Atilio Deana, Joel G Belasco. Mol Cell 2007
Helena Celesnik, Atilio Deana, Joel G Belasco. Mol Cell 2007
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Translation initiation factor a/eIF2(-gamma) counteracts 5' to 3' mRNA decay in the archaeon Sulfolobus solfataricus.
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Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation.
Zhonghao Shi, Wei-Zen Yang, Sue Lin-Chao, Kin-Fu Chak, Hanna S Yuan. RNA 2008
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Endonucleolytic RNA cleavage by a eukaryotic exosome.
Alice Lebreton, Rafal Tomecki, Andrzej Dziembowski, Bertrand Séraphin. Nature 2008
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The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation.
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Crystal structure of the S. solfataricus archaeal exosome reveals conformational flexibility in the RNA-binding ring.
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The evolutionarily conserved subunits Rrp4 and Csl4 confer different substrate specificities to the archaeal exosome.
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Heterogeneous complexes of the RNA exosome in Sulfolobus solfataricus.
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The poly(A) tail of mRNAs: bodyguard in eukaryotes, scavenger in bacteria.
Marc Dreyfus, Philippe Régnier. Cell 2002
Marc Dreyfus, Philippe Régnier. Cell 2002
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Addition of poly(A) and heteropolymeric 3' ends in Bacillus subtilis wild-type and polynucleotide phosphorylase-deficient strains.
Juan Campos-Guillén, Patricia Bralley, George H Jones, David H Bechhofer, Gabriela Olmedo-Alvarez. J Bacteriol 2005
Juan Campos-Guillén, Patricia Bralley, George H Jones, David H Bechhofer, Gabriela Olmedo-Alvarez. J Bacteriol 2005
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The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex.
J S Anderson, R P Parker. EMBO J 1998
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Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring.
Reinout Raijmakers, Wilma Vree Egberts, Walther J van Venrooij, Ger J M Pruijn. J Mol Biol 2002
Reinout Raijmakers, Wilma Vree Egberts, Walther J van Venrooij, Ger J M Pruijn. J Mol Biol 2002
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