A citation-based method for searching scientific literature

Victoria Portnoy, Elena Evguenieva-Hackenberg, Franziska Klein, Pamela Walter, Esben Lorentzen, Gabriele Klug, Gadi Schuster. EMBO Rep 2005
Times Cited: 72







List of co-cited articles
884 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The archaeal exosome core is a hexameric ring structure with three catalytic subunits.
Esben Lorentzen, Pamela Walter, Sebastien Fribourg, Elena Evguenieva-Hackenberg, Gabriele Klug, Elena Conti. Nat Struct Mol Biol 2005
175
58

Structural framework for the mechanism of archaeal exosomes in RNA processing.
Katharina Büttner, Katja Wenig, Karl-Peter Hopfner. Mol Cell 2005
133
56

An exosome-like complex in Sulfolobus solfataricus.
Elena Evguenieva-Hackenberg, Pamela Walter, Elizabeth Hochleitner, Friedrich Lottspeich, Gabriele Klug. EMBO Rep 2003
113
50





A single subunit, Dis3, is essentially responsible for yeast exosome core activity.
Andrzej Dziembowski, Esben Lorentzen, Elena Conti, Bertrand Séraphin. Nat Struct Mol Biol 2007
325
41

Reconstitution, activities, and structure of the eukaryotic RNA exosome.
Quansheng Liu, Jaclyn C Greimann, Christopher D Lima. Cell 2006
405
41


RNA channelling by the archaeal exosome.
Esben Lorentzen, Andrzej Dziembowski, Doris Lindner, Bertrand Seraphin, Elena Conti. EMBO Rep 2007
92
38

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex.
John LaCava, Jonathan Houseley, Cosmin Saveanu, Elisabeth Petfalski, Elizabeth Thompson, Alain Jacquier, David Tollervey. Cell 2005
678
37


Characterization of native and reconstituted exosome complexes from the hyperthermophilic archaeon Sulfolobus solfataricus.
Pamela Walter, Franziska Klein, Esben Lorentzen, Anne Ilchmann, Gabriele Klug, Elena Evguenieva-Hackenberg. Mol Microbiol 2006
45
51

RNA-quality control by the exosome.
Jonathan Houseley, John LaCava, David Tollervey. Nat Rev Mol Cell Biol 2006
481
30

A new yeast poly(A) polymerase complex involved in RNA quality control.
Stepánka Vanácová, Jeannette Wolf, Georges Martin, Diana Blank, Sabine Dettwiler, Arno Friedlein, Hanno Langen, Gérard Keith, Walter Keller. PLoS Biol 2005
454
29

Running rings around RNA: a superfamily of phosphate-dependent RNases.
Martyn F Symmons, Mark G Williams, Ben F Luisi, George H Jones, Agamemnon J Carpousis. Trends Biochem Sci 2002
130
27

Insights into the mechanism of progressive RNA degradation by the archaeal exosome.
Marcos V A S Navarro, Carla C Oliveira, Nilson I T Zanchin, Beatriz G Guimarães. J Biol Chem 2008
46
43


RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from Escherichia coli.
Ruth Rott, Gadi Zipor, Victoria Portnoy, Varda Liveanu, Gadi Schuster. J Biol Chem 2003
81
25

Protein complexes in the archaeon Methanothermobacter thermautotrophicus analyzed by blue native/SDS-PAGE and mass spectrometry.
Murtada H Farhoud, Hans J C T Wessels, Peter J M Steenbakkers, Sandy Mattijssen, Ron A Wevers, Baziel G van Engelen, Mike S M Jetten, Jan A Smeitink, Lambert P van den Heuvel, Jan T Keltjens. Mol Cell Proteomics 2005
69
26

The Pyrococcus exosome complex: structural and functional characterization.
Celso Raul Romero Ramos, Cristiano L P Oliveira, Iris L Torriani, Carla Columbano Oliveira. J Biol Chem 2006
34
52

The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli.
Bijoy K Mohanty, Valerie F Maples, Sidney R Kushner. Mol Microbiol 2004
171
23


Polynucleotide phosphorylase and the archaeal exosome as poly(A)-polymerases.
Shimyn Slomovic, Victoria Portnoy, Shlomit Yehudai-Resheff, Ela Bronshtein, Gadi Schuster. Biochim Biophys Acta 2008
50
34


Rrp4 and Csl4 are needed for efficient degradation but not for polyadenylation of synthetic and natural RNA by the archaeal exosome.
Elena Evguenieva-Hackenberg, Verena Roppelt, Pamela Finsterseifer, Gabriele Klug. Biochemistry 2008
24
66

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.
Françoise Wyers, Mathieu Rougemaille, Gwenaël Badis, Jean-Claude Rousselle, Marie-Elisabeth Dufour, Jocelyne Boulay, Béatrice Régnault, Frédéric Devaux, Abdelkader Namane, Bertrand Séraphin,[...]. Cell 2005
658
20

Functions of the exosome in rRNA, snoRNA and snRNA synthesis.
C Allmang, J Kufel, G Chanfreau, P Mitchell, E Petfalski, D Tollervey. EMBO J 1999
460
19

The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases.
C Allmang, E Petfalski, A Podtelejnikov, M Mann, D Tollervey, P Mitchell. Genes Dev 1999
366
19

5'-to-3' exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA.
Nathalie Mathy, Lionel Bénard, Olivier Pellegrini, Roula Daou, Tingyi Wen, Ciarán Condon. Cell 2007
256
18

Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E.
Sergine Even, Olivier Pellegrini, Lena Zig, Valerie Labas, Joelle Vinh, Dominique Bréchemmier-Baey, Harald Putzer. Nucleic Acids Res 2005
231
18

The complete genome of the crenarchaeon Sulfolobus solfataricus P2.
Q She, R K Singh, F Confalonieri, Y Zivanovic, G Allard, M J Awayez, C C Chan-Weiher, I G Clausen, B A Curtis, A De Moors,[...]. Proc Natl Acad Sci U S A 2001
604
16

The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities.
Daneen Schaeffer, Borislava Tsanova, Ana Barbas, Filipa Pereira Reis, Eeshita Ghosh Dastidar, Maya Sanchez-Rotunno, Cecília Maria Arraiano, Ambro van Hoof. Nat Struct Mol Biol 2009
215
16

Polyadenylation and degradation of human mitochondrial RNA: the prokaryotic past leaves its mark.
Shimyn Slomovic, David Laufer, Dan Geiger, Gadi Schuster. Mol Cell Biol 2005
121
15

Arabidopsis thaliana exosome subunit AtRrp4p is a hydrolytic 3'-->5' exonuclease containing S1 and KH RNA-binding domains.
Julia A Chekanova, James A Dutko, I Saira Mian, Dmitry A Belostotsky. Nucleic Acids Res 2002
63
17


The exosome: a macromolecular cage for controlled RNA degradation.
Katharina Büttner, Katja Wenig, Karl-Peter Hopfner. Mol Microbiol 2006
39
28

Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal.
Helena Celesnik, Atilio Deana, Joel G Belasco. Mol Cell 2007
187
15

Translation initiation factor a/eIF2(-gamma) counteracts 5' to 3' mRNA decay in the archaeon Sulfolobus solfataricus.
David Hasenöhrl, Tania Lombo, Vladimir Kaberdin, Paola Londei, Udo Bläsi. Proc Natl Acad Sci U S A 2008
41
26

Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation.
Zhonghao Shi, Wei-Zen Yang, Sue Lin-Chao, Kin-Fu Chak, Hanna S Yuan. RNA 2008
73
15

Endonucleolytic RNA cleavage by a eukaryotic exosome.
Alice Lebreton, Rafal Tomecki, Andrzej Dziembowski, Bertrand Séraphin. Nature 2008
241
15

The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation.
Fabien Bonneau, Jérôme Basquin, Judith Ebert, Esben Lorentzen, Elena Conti. Cell 2009
183
15



Heterogeneous complexes of the RNA exosome in Sulfolobus solfataricus.
Chamindri Witharana, Verena Roppelt, Günther Lochnit, Gabriele Klug, Elena Evguenieva-Hackenberg. Biochimie 2012
19
57


Addition of poly(A) and heteropolymeric 3' ends in Bacillus subtilis wild-type and polynucleotide phosphorylase-deficient strains.
Juan Campos-Guillén, Patricia Bralley, George H Jones, David H Bechhofer, Gabriela Olmedo-Alvarez. J Bacteriol 2005
44
22




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.