Michael-Christopher Keogh, Siavash K Kurdistani, Stephanie A Morris, Seong Hoon Ahn, Vladimir Podolny, Sean R Collins, Maya Schuldiner, Kayu Chin, Thanuja Punna, Natalie J Thompson, Charles Boone, Andrew Emili, Jonathan S Weissman, Timothy R Hughes, Brian D Strahl, Michael Grunstein, Jack F Greenblatt, Stephen Buratowski, Nevan J Krogan. Cell 2005
Times Cited: 597
Times Cited: 597
Times Cited
Times Co-cited
Similarity
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription.
Michael J Carrozza, Bing Li, Laurence Florens, Tamaki Suganuma, Selene K Swanson, Kenneth K Lee, Wei-Jong Shia, Scott Anderson, John Yates, Michael P Washburn,[...]. Cell 2005
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Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation.
Amita A Joshi, Kevin Struhl. Mol Cell 2005
Amita A Joshi, Kevin Struhl. Mol Cell 2005
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Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes.
Swaminathan Venkatesh, Michaela Smolle, Hua Li, Madelaine M Gogol, Malika Saint, Shambhu Kumar, Krishnamurthy Natarajan, Jerry L Workman. Nature 2012
Swaminathan Venkatesh, Michaela Smolle, Hua Li, Madelaine M Gogol, Malika Saint, Shambhu Kumar, Krishnamurthy Natarajan, Jerry L Workman. Nature 2012
30
A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation.
Kelby O Kizer, Hemali P Phatnani, Yoichiro Shibata, Hana Hall, Arno L Greenleaf, Brian D Strahl. Mol Cell Biol 2005
Kelby O Kizer, Hemali P Phatnani, Yoichiro Shibata, Hana Hall, Arno L Greenleaf, Brian D Strahl. Mol Cell Biol 2005
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Understanding the language of Lys36 methylation at histone H3.
Eric J Wagner, Phillip B Carpenter. Nat Rev Mol Cell Biol 2012
Eric J Wagner, Phillip B Carpenter. Nat Rev Mol Cell Biol 2012
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Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.
Brian D Strahl, Patrick A Grant, Scott D Briggs, Zu-Wen Sun, James R Bone, Jennifer A Caldwell, Sahana Mollah, Richard G Cook, Jeffrey Shabanowitz, Donald F Hunt,[...]. Mol Cell Biol 2002
Brian D Strahl, Patrick A Grant, Scott D Briggs, Zu-Wen Sun, James R Bone, Jennifer A Caldwell, Sahana Mollah, Richard G Cook, Jeffrey Shabanowitz, Donald F Hunt,[...]. Mol Cell Biol 2002
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The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II.
Bing Li, LeAnn Howe, Scott Anderson, John R Yates, Jerry L Workman. J Biol Chem 2003
Bing Li, LeAnn Howe, Scott Anderson, John R Yates, Jerry L Workman. J Biol Chem 2003
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Modulation of mRNA and lncRNA expression dynamics by the Set2-Rpd3S pathway.
Ji Hyun Kim, Bo Bae Lee, Young Mi Oh, Chenchen Zhu, Lars M Steinmetz, Yookyeong Lee, Wan Kyu Kim, Sung Bae Lee, Stephen Buratowski, TaeSoo Kim. Nat Commun 2016
Ji Hyun Kim, Bo Bae Lee, Young Mi Oh, Chenchen Zhu, Lars M Steinmetz, Yookyeong Lee, Wan Kyu Kim, Sung Bae Lee, Stephen Buratowski, TaeSoo Kim. Nat Commun 2016
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Genome-wide map of nucleosome acetylation and methylation in yeast.
Dmitry K Pokholok, Christopher T Harbison, Stuart Levine, Megan Cole, Nancy M Hannett, Tong Ihn Lee, George W Bell, Kimberly Walker, P Alex Rolfe, Elizabeth Herbolsheimer,[...]. Cell 2005
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Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast.
Tiaojiang Xiao, Hana Hall, Kelby O Kizer, Yoichiro Shibata, Mark C Hall, Christoph H Borchers, Brian D Strahl. Genes Dev 2003
Tiaojiang Xiao, Hana Hall, Kelby O Kizer, Yoichiro Shibata, Mark C Hall, Christoph H Borchers, Brian D Strahl. Genes Dev 2003
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Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin.
Bing Li, Madelaine Gogol, Mike Carey, Daeyoup Lee, Chris Seidel, Jerry L Workman. Science 2007
Bing Li, Madelaine Gogol, Mike Carey, Daeyoup Lee, Chris Seidel, Jerry L Workman. Science 2007
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Phosphorylated Pol II CTD recruits multiple HDACs, including Rpd3C(S), for methylation-dependent deacetylation of ORF nucleosomes.
Chhabi K Govind, Hongfang Qiu, Daniel S Ginsburg, Chun Ruan, Kimberly Hofmeyer, Cuihua Hu, Venkatesh Swaminathan, Jerry L Workman, Bing Li, Alan G Hinnebusch. Mol Cell 2010
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Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II.
Nevan J Krogan, Minkyu Kim, Amy Tong, Ashkan Golshani, Gerard Cagney, Veronica Canadien, Dawn P Richards, Bryan K Beattie, Andrew Emili, Charles Boone,[...]. Mol Cell Biol 2003
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Intragenic DNA methylation prevents spurious transcription initiation.
Francesco Neri, Stefania Rapelli, Anna Krepelova, Danny Incarnato, Caterina Parlato, Giulia Basile, Mara Maldotti, Francesca Anselmi, Salvatore Oliviero. Nature 2017
Francesco Neri, Stefania Rapelli, Anna Krepelova, Danny Incarnato, Caterina Parlato, Giulia Basile, Mara Maldotti, Francesca Anselmi, Salvatore Oliviero. Nature 2017
18
Nascent transcript sequencing visualizes transcription at nucleotide resolution.
L Stirling Churchman, Jonathan S Weissman. Nature 2011
L Stirling Churchman, Jonathan S Weissman. Nature 2011
18
Transcription elongation factors repress transcription initiation from cryptic sites.
Craig D Kaplan, Lisa Laprade, Fred Winston. Science 2003
Craig D Kaplan, Lisa Laprade, Fred Winston. Science 2003
17
Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange.
Michaela Smolle, Swaminathan Venkatesh, Madelaine M Gogol, Hua Li, Ying Zhang, Laurence Florens, Michael P Washburn, Jerry L Workman. Nat Struct Mol Biol 2012
Michaela Smolle, Swaminathan Venkatesh, Madelaine M Gogol, Hua Li, Ying Zhang, Laurence Florens, Michael P Washburn, Jerry L Workman. Nat Struct Mol Biol 2012
17
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity.
Huck Hui Ng, François Robert, Richard A Young, Kevin Struhl. Mol Cell 2003
Huck Hui Ng, François Robert, Richard A Young, Kevin Struhl. Mol Cell 2003
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Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5' transcribed regions.
TaeSoo Kim, Stephen Buratowski. Cell 2009
TaeSoo Kim, Stephen Buratowski. Cell 2009
16
Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics.
TaeSoo Kim, Zhenyu Xu, Sandra Clauder-Münster, Lars M Steinmetz, Stephen Buratowski. Cell 2012
TaeSoo Kim, Zhenyu Xu, Sandra Clauder-Münster, Lars M Steinmetz, Stephen Buratowski. Cell 2012
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Shaping the cellular landscape with Set2/SETD2 methylation.
Stephen L McDaniel, Brian D Strahl. Cell Mol Life Sci 2017
Stephen L McDaniel, Brian D Strahl. Cell Mol Life Sci 2017
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Regulation of alternative splicing by histone modifications.
Reini F Luco, Qun Pan, Kaoru Tominaga, Benjamin J Blencowe, Olivia M Pereira-Smith, Tom Misteli. Science 2010
Reini F Luco, Qun Pan, Kaoru Tominaga, Benjamin J Blencowe, Olivia M Pereira-Smith, Tom Misteli. Science 2010
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Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription.
Bing Li, Madelaine Gogol, Mike Carey, Samantha G Pattenden, Chris Seidel, Jerry L Workman. Genes Dev 2007
Bing Li, Madelaine Gogol, Mike Carey, Samantha G Pattenden, Chris Seidel, Jerry L Workman. Genes Dev 2007
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Selective suppression of antisense transcription by Set2-mediated H3K36 methylation.
Swaminathan Venkatesh, Hua Li, Madelaine M Gogol, Jerry L Workman. Nat Commun 2016
Swaminathan Venkatesh, Hua Li, Madelaine M Gogol, Jerry L Workman. Nat Commun 2016
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Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome.
Vanessa Cheung, Gordon Chua, Nizar N Batada, Christian R Landry, Stephen W Michnick, Timothy R Hughes, Fred Winston. PLoS Biol 2008
Vanessa Cheung, Gordon Chua, Nizar N Batada, Christian R Landry, Stephen W Michnick, Timothy R Hughes, Fred Winston. PLoS Biol 2008
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Histone methyltransferase SETD2 coordinates FACT recruitment with nucleosome dynamics during transcription.
Sílvia Carvalho, Ana Cláudia Raposo, Filipa Batalha Martins, Ana Rita Grosso, Sreerama Chaitanya Sridhara, José Rino, Maria Carmo-Fonseca, Sérgio Fernandes de Almeida. Nucleic Acids Res 2013
Sílvia Carvalho, Ana Cláudia Raposo, Filipa Batalha Martins, Ana Rita Grosso, Sreerama Chaitanya Sridhara, José Rino, Maria Carmo-Fonseca, Sérgio Fernandes de Almeida. Nucleic Acids Res 2013
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The histone mark H3K36me3 regulates human DNA mismatch repair through its interaction with MutSα.
Feng Li, Guogen Mao, Dan Tong, Jian Huang, Liya Gu, Wei Yang, Guo-Min Li. Cell 2013
Feng Li, Guogen Mao, Dan Tong, Jian Huang, Liya Gu, Wei Yang, Guo-Min Li. Cell 2013
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High-resolution chromatin dynamics during a yeast stress response.
Assaf Weiner, Tsung-Han S Hsieh, Alon Appleboim, Hsiuyi V Chen, Ayelet Rahat, Ido Amit, Oliver J Rando, Nir Friedman. Mol Cell 2015
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Roles for Ctk1 and Spt6 in regulating the different methylation states of histone H3 lysine 36.
Michael L Youdell, Kelby O Kizer, Elena Kisseleva-Romanova, Stephen M Fuchs, Eris Duro, Brian D Strahl, Jane Mellor. Mol Cell Biol 2008
Michael L Youdell, Kelby O Kizer, Elena Kisseleva-Romanova, Stephen M Fuchs, Eris Duro, Brian D Strahl, Jane Mellor. Mol Cell Biol 2008
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Spatial distribution of di- and tri-methyl lysine 36 of histone H3 at active genes.
Andrew J Bannister, Robert Schneider, Fiona A Myers, Alan W Thorne, Colyn Crane-Robinson, Tony Kouzarides. J Biol Chem 2005
Andrew J Bannister, Robert Schneider, Fiona A Myers, Alan W Thorne, Colyn Crane-Robinson, Tony Kouzarides. J Biol Chem 2005
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Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
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Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription.
Bing Li, Jessica Jackson, Matthew D Simon, Brian Fleharty, Madelaine Gogol, Chris Seidel, Jerry L Workman, Ali Shilatifard. J Biol Chem 2009
Bing Li, Jessica Jackson, Matthew D Simon, Brian Fleharty, Madelaine Gogol, Chris Seidel, Jerry L Workman, Ali Shilatifard. J Biol Chem 2009
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High-resolution profiling of histone methylations in the human genome.
Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Dustin E Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao. Cell 2007
Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Dustin E Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao. Cell 2007
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DSIF and RNA polymerase II CTD phosphorylation coordinate the recruitment of Rpd3S to actively transcribed genes.
Simon Drouin, Louise Laramée, Pierre-Étienne Jacques, Audrey Forest, Maxime Bergeron, François Robert. PLoS Genet 2010
Simon Drouin, Louise Laramée, Pierre-Étienne Jacques, Audrey Forest, Maxime Bergeron, François Robert. PLoS Genet 2010
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The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
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Bidirectional promoters generate pervasive transcription in yeast.
Zhenyu Xu, Wu Wei, Julien Gagneur, Fabiana Perocchi, Sandra Clauder-Münster, Jurgi Camblong, Elisa Guffanti, Françoise Stutz, Wolfgang Huber, Lars M Steinmetz. Nature 2009
Zhenyu Xu, Wu Wei, Julien Gagneur, Fabiana Perocchi, Sandra Clauder-Münster, Jurgi Camblong, Elisa Guffanti, Françoise Stutz, Wolfgang Huber, Lars M Steinmetz. Nature 2009
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Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene.
Joseph A Martens, Lisa Laprade, Fred Winston. Nature 2004
Joseph A Martens, Lisa Laprade, Fred Winston. Nature 2004
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BEDTools: a flexible suite of utilities for comparing genomic features.
Aaron R Quinlan, Ira M Hall. Bioinformatics 2010
Aaron R Quinlan, Ira M Hall. Bioinformatics 2010
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Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
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Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation.
Jiaxu Li, Danesh Moazed, Steven P Gygi. J Biol Chem 2002
Jiaxu Li, Danesh Moazed, Steven P Gygi. J Biol Chem 2002
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H3K36 Methylation Regulates Nutrient Stress Response in Saccharomyces cerevisiae by Enforcing Transcriptional Fidelity.
Stephen L McDaniel, Austin J Hepperla, Jie Huang, Raghuvar Dronamraju, Alexander T Adams, Vidyadhar G Kulkarni, Ian J Davis, Brian D Strahl. Cell Rep 2017
Stephen L McDaniel, Austin J Hepperla, Jie Huang, Raghuvar Dronamraju, Alexander T Adams, Vidyadhar G Kulkarni, Ian J Davis, Brian D Strahl. Cell Rep 2017
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STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
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An RNA polymerase II-coupled function for histone H3K36 methylation in checkpoint activation and DSB repair.
Deepak Kumar Jha, Brian D Strahl. Nat Commun 2014
Deepak Kumar Jha, Brian D Strahl. Nat Commun 2014
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The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation.
Daniel Schaft, Assen Roguev, Kimberly M Kotovic, Anna Shevchenko, Mihail Sarov, Andrej Shevchenko, Karla M Neugebauer, A Francis Stewart. Nucleic Acids Res 2003
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A conserved genetic interaction between Spt6 and Set2 regulates H3K36 methylation.
Rajaraman Gopalakrishnan, Sharon K Marr, Robert E Kingston, Fred Winston. Nucleic Acids Res 2019
Rajaraman Gopalakrishnan, Sharon K Marr, Robert E Kingston, Fred Winston. Nucleic Acids Res 2019
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Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.