A citation-based method for searching scientific literature

Fritjof Helmchen, Winfried Denk. Nat Methods 2005
Times Cited: 2088







List of co-cited articles
583 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Two-photon laser scanning fluorescence microscopy.
W Denk, J H Strickler, W W Webb. Science 1990
29

Nonlinear magic: multiphoton microscopy in the biosciences.
Warren R Zipfel, Rebecca M Williams, Watt W Webb. Nat Biotechnol 2003
20

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
16

In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain.
Dimitre G Ouzounov, Tianyu Wang, Mengran Wang, Danielle D Feng, Nicholas G Horton, Jean C Cruz-Hernández, Yu-Ting Cheng, Jacob Reimer, Andreas S Tolias, Nozomi Nishimura,[...]. Nat Methods 2017
206
12

In vivo three-photon microscopy of subcortical structures within an intact mouse brain.
Nicholas G Horton, Ke Wang, Demirhan Kobat, Catharine G Clark, Frank W Wise, Chris B Schaffer, Chris Xu. Nat Photonics 2013
546
11

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
289
9

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
371
9

Clarifying Tissue Clearing.
Douglas S Richardson, Jeff W Lichtman. Cell 2015
593
9

Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window.
Anthony Holtmaat, Tobias Bonhoeffer, David K Chow, Jyoti Chuckowree, Vincenzo De Paola, Sonja B Hofer, Mark Hübener, Tara Keck, Graham Knott, Wei-Chung A Lee,[...]. Nat Protoc 2009
592
9


Brain heating induced by near-infrared lasers during multiphoton microscopy.
Kaspar Podgorski, Gayathri Ranganathan. J Neurophysiol 2016
108
9

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
8

NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.
Eftychios A Pnevmatikakis, Andrea Giovannucci. J Neurosci Methods 2017
212
8

In vivo imaging of neural activity.
Weijian Yang, Rafael Yuste. Nat Methods 2017
180
8

CaImAn an open source tool for scalable calcium imaging data analysis.
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou,[...]. Elife 2019
165
8

A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging.
Nicholas James Sofroniew, Daniel Flickinger, Jonathan King, Karel Svoboda. Elife 2016
241
8

Volumetric Ca2+ Imaging in the Mouse Brain Using Hybrid Multiplexed Sculpted Light Microscopy.
Siegfried Weisenburger, Frank Tejera, Jeffrey Demas, Brandon Chen, Jason Manley, Fraser T Sparks, Francisca Martínez Traub, Tanya Daigle, Hongkui Zeng, Attila Losonczy,[...]. Cell 2019
65
12

Optical sectioning deep inside live embryos by selective plane illumination microscopy.
Jan Huisken, Jim Swoger, Filippo Del Bene, Joachim Wittbrodt, Ernst H K Stelzer. Science 2004
8

Two-photon excitation fluorescence microscopy.
P T So, C Y Dong, B R Masters, K M Berland. Annu Rev Biomed Eng 2000
488
8


Structural and molecular interrogation of intact biological systems.
Kwanghun Chung, Jenelle Wallace, Sung-Yon Kim, Sandhiya Kalyanasundaram, Aaron S Andalman, Thomas J Davidson, Julie J Mirzabekov, Kelly A Zalocusky, Joanna Mattis, Aleksandra K Denisin,[...]. Nature 2013
7


Functional imaging of visual cortical layers and subplate in awake mice with optimized three-photon microscopy.
Murat Yildirim, Hiroki Sugihara, Peter T C So, Mriganka Sur. Nat Commun 2019
48
14

Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain.
Hiroshi Hama, Hiroshi Kurokawa, Hiroyuki Kawano, Ryoko Ando, Tomomi Shimogori, Hisayori Noda, Kiyoko Fukami, Asako Sakaue-Sawano, Atsushi Miyawaki. Nat Neurosci 2011
744
6

Video-rate volumetric functional imaging of the brain at synaptic resolution.
Rongwen Lu, Wenzhi Sun, Yajie Liang, Aaron Kerlin, Jens Bierfeld, Johannes D Seelig, Daniel E Wilson, Benjamin Scholl, Boaz Mohar, Masashi Tanimoto,[...]. Nat Neurosci 2017
110
6

Automated analysis of cellular signals from large-scale calcium imaging data.
Eran A Mukamel, Axel Nimmerjahn, Mark J Schnitzer. Neuron 2009
362
6

In vivo dendritic calcium dynamics in neocortical pyramidal neurons.
K Svoboda, W Denk, D Kleinfeld, D W Tank. Nature 1997
523
6

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
421
6

Wide field-of-view, multi-region, two-photon imaging of neuronal activity in the mammalian brain.
Jeffrey N Stirman, Ikuko T Smith, Michael W Kudenov, Spencer L Smith. Nat Biotechnol 2016
146
6

Optical properties of biological tissues: a review.
Steven L Jacques. Phys Med Biol 2013
6

Comparing the effective attenuation lengths for long wavelength in vivo imaging of the mouse brain.
Mengran Wang, Chunyan Wu, David Sinefeld, Bo Li, Fei Xia, Chris Xu. Biomed Opt Express 2018
34
17


Three-photon imaging of mouse brain structure and function through the intact skull.
Tianyu Wang, Dimitre G Ouzounov, Chunyan Wu, Nicholas G Horton, Bin Zhang, Cheng-Hsun Wu, Yanping Zhang, Mark J Schnitzer, Chris Xu. Nat Methods 2018
106
6

Fluorescence microscopy.
Jeff W Lichtman, José-Angel Conchello. Nat Methods 2005
634
6

Simultaneous multiplane imaging with reverberation two-photon microscopy.
Devin R Beaulieu, Ian G Davison, Kıvılcım Kılıç, Thomas G Bifano, Jerome Mertz. Nat Methods 2020
27
22

Ultra-large field-of-view two-photon microscopy.
Philbert S Tsai, Celine Mateo, Jeffrey J Field, Chris B Schaffer, Matthew E Anderson, David Kleinfeld. Opt Express 2015
57
10

Kilohertz two-photon fluorescence microscopy imaging of neural activity in vivo.
Jianglai Wu, Yajie Liang, Shuo Chen, Ching-Lung Hsu, Mariya Chavarha, Stephen W Evans, Dongqing Shi, Michael Z Lin, Kevin K Tsia, Na Ji. Nat Methods 2020
53
11


Whole-brain functional imaging at cellular resolution using light-sheet microscopy.
Misha B Ahrens, Michael B Orger, Drew N Robson, Jennifer M Li, Philipp J Keller. Nat Methods 2013
646
6

Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.
Hans-Ulrich Dodt, Ulrich Leischner, Anja Schierloh, Nina Jährling, Christoph Peter Mauch, Katrin Deininger, Jan Michael Deussing, Matthias Eder, Walter Zieglgänsberger, Klaus Becker. Nat Methods 2007
718
5

iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.
Nicolas Renier, Zhuhao Wu, David J Simon, Jing Yang, Pablo Ariel, Marc Tessier-Lavigne. Cell 2014
714
5

In vivo two-photon calcium imaging of neuronal networks.
Christoph Stosiek, Olga Garaschuk, Knut Holthoff, Arthur Konnerth. Proc Natl Acad Sci U S A 2003
846
5

Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data.
Pengcheng Zhou, Shanna L Resendez, Jose Rodriguez-Romaguera, Jessica C Jimenez, Shay Q Neufeld, Andrea Giovannucci, Johannes Friedrich, Eftychios A Pnevmatikakis, Garret D Stuber, Rene Hen,[...]. Elife 2018
173
5

Long-Term Optical Access to an Estimated One Million Neurons in the Live Mouse Cortex.
Tony Hyun Kim, Yanping Zhang, Jérôme Lecoq, Juergen C Jung, Jane Li, Hongkui Zeng, Cristopher M Niell, Mark J Schnitzer. Cell Rep 2016
106
5

In vivo two-photon microscopy to 1.6-mm depth in mouse cortex.
Demirhan Kobat, Nicholas G Horton, Chris Xu. J Biomed Opt 2011
202
5

Fast volumetric calcium imaging across multiple cortical layers using sculpted light.
Robert Prevedel, Aart J Verhoef, Alejandro J Pernía-Andrade, Siegfried Weisenburger, Ben S Huang, Tobias Nöbauer, Alma Fernández, Jeroen E Delcour, Peyman Golshani, Andrius Baltuska,[...]. Nat Methods 2016
72
6

ScanImage: flexible software for operating laser scanning microscopes.
Thomas A Pologruto, Bernardo L Sabatini, Karel Svoboda. Biomed Eng Online 2003
742
5

Optical sectioning microscopy.
José-Angel Conchello, Jeff W Lichtman. Nat Methods 2005
358
5

Detecting cells using non-negative matrix factorization on calcium imaging data.
Ryuichi Maruyama, Kazuma Maeda, Hajime Moroda, Ichiro Kato, Masashi Inoue, Hiroyoshi Miyakawa, Toru Aonishi. Neural Netw 2014
51
9

Imaging large-scale neural activity with cellular resolution in awake, mobile mice.
Daniel A Dombeck, Anton N Khabbaz, Forrest Collman, Thomas L Adelman, David W Tank. Neuron 2007
645
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.