A citation-based method for searching scientific literature

Caifu Chen, Dana A Ridzon, Adam J Broomer, Zhaohui Zhou, Danny H Lee, Julie T Nguyen, Maura Barbisin, Nan Lan Xu, Vikram R Mahuvakar, Mark R Andersen, Kai Qin Lao, Kenneth J Livak, Karl J Guegler. Nucleic Acids Res 2005
Times Cited: 3557







List of co-cited articles
442 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Sensitive and specific detection of microRNAs by northern blot analysis using LNA-modified oligonucleotide probes.
Anna Válóczi, Csaba Hornyik, Nóra Varga, József Burgyán, Sakari Kauppinen, Zoltán Havelda. Nucleic Acids Res 2004
562
13




MicroRNA: function, detection, and bioanalysis.
Haifeng Dong, Jianping Lei, Lin Ding, Yongqiang Wen, Huangxian Ju, Xueji Zhang. Chem Rev 2013
696
8

Identification of novel genes coding for small expressed RNAs.
M Lagos-Quintana, R Rauhut, W Lendeckel, T Tuschl. Science 2001
7

MicroRNA detection by microarray.
Wei Li, Kangcheng Ruan. Anal Bioanal Chem 2009
232
7

Ultrasensitive detection of microRNAs by exponential isothermal amplification.
Hongxia Jia, Zhengping Li, Chenghui Liu, Yongqiang Cheng. Angew Chem Int Ed Engl 2010
340
7

Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs.
Erika Varkonyi-Gasic, Rongmei Wu, Marion Wood, Eric F Walton, Roger P Hellens. Plant Methods 2007
760
7

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
7

MicroRNA profiling: approaches and considerations.
Colin C Pritchard, Heather H Cheng, Muneesh Tewari. Nat Rev Genet 2012
6

MicroRNA detection by northern blotting using locked nucleic acid probes.
Eva Várallyay, József Burgyán, Zoltán Havelda. Nat Protoc 2008
355
6

Oncomirs - microRNAs with a role in cancer.
Aurora Esquela-Kerscher, Frank J Slack. Nat Rev Cancer 2006
6



One-step ultrasensitive detection of microRNAs with loop-mediated isothermal amplification (LAMP).
Cuiping Li, Zhengping Li, Hongxia Jia, Jingli Yan. Chem Commun (Camb) 2011
135
6

Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation.
Jacob O'Brien, Heyam Hayder, Yara Zayed, Chun Peng. Front Endocrinol (Lausanne) 2018
5

The widespread regulation of microRNA biogenesis, function and decay.
Jacek Krol, Inga Loedige, Witold Filipowicz. Nat Rev Genet 2010
5

miRBase: from microRNA sequences to function.
Ana Kozomara, Maria Birgaoanu, Sam Griffiths-Jones. Nucleic Acids Res 2019
5

Regulation of microRNA function in animals.
Luca F R Gebert, Ian J MacRae. Nat Rev Mol Cell Biol 2019
997
5

Profiling microRNA expression with microarrays.
James Q Yin, Robert C Zhao, Kevin V Morris. Trends Biotechnol 2008
168
5

HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
5

Stem-loop RT-qPCR for miRNAs.
Martha F Kramer. Curr Protoc Mol Biol 2011
141
5


A sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA).
Mirco Castoldi, Sabine Schmidt, Vladimir Benes, Mikkel Noerholm, Andreas E Kulozik, Matthias W Hentze, Martina U Muckenthaler. RNA 2006
308
4

Circulating microRNAs as stable blood-based markers for cancer detection.
Patrick S Mitchell, Rachael K Parkin, Evan M Kroh, Brian R Fritz, Stacia K Wyman, Era L Pogosova-Agadjanyan, Amelia Peterson, Jennifer Noteboom, Kathy C O'Briant, April Allen,[...]. Proc Natl Acad Sci U S A 2008
4


High specific and ultrasensitive isothermal detection of microRNA by padlock probe-based exponential rolling circle amplification.
Haiyun Liu, Lu Li, Lili Duan, Xu Wang, Yanxia Xie, Lili Tong, Qian Wang, Bo Tang. Anal Chem 2013
158
4

Two-tailed RT-qPCR: a novel method for highly accurate miRNA quantification.
Peter Androvic, Lukas Valihrach, Julie Elling, Robert Sjoback, Mikael Kubista. Nucleic Acids Res 2017
84
4

A sensitive non-radioactive northern blot method to detect small RNAs.
Sang Woo Kim, Zhihua Li, Patrick S Moore, A Paula Monaghan, Yuan Chang, Mark Nichols, Bino John. Nucleic Acids Res 2010
188
4

MicroRNA Detection Specificity: Recent Advances and Future Perspective.
Tinglan Ouyang, Zhiyu Liu, Zhiyi Han, Qinyu Ge. Anal Chem 2019
74
5

RNAhybrid: microRNA target prediction easy, fast and flexible.
Jan Krüger, Marc Rehmsmeier. Nucleic Acids Res 2006
4

Real-time PCR quantification of precursor and mature microRNA.
Thomas D Schmittgen, Eun Joo Lee, Jinmai Jiang, Anasuya Sarkar, Liuqing Yang, Terry S Elton, Caifu Chen. Methods 2008
417
4

psRNATarget: a plant small RNA target analysis server (2017 release).
Xinbin Dai, Zhaohong Zhuang, Patrick Xuechun Zhao. Nucleic Acids Res 2018
442
4

Classification and comparison of small RNAs from plants.
Michael J Axtell. Annu Rev Plant Biol 2013
503
4

Target mimicry provides a new mechanism for regulation of microRNA activity.
José Manuel Franco-Zorrilla, Adrián Valli, Marco Todesco, Isabel Mateos, María Isabel Puga, Ignacio Rubio-Somoza, Antonio Leyva, Detlef Weigel, Juan Antonio García, Javier Paz-Ares. Nat Genet 2007
4

qPCR-based methods for expression analysis of miRNAs.
Diego A Forero, Yeimy González-Giraldo, Luis J Castro-Vega, George E Barreto. Biotechniques 2019
29
13

The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis.
Gang Wu, Mee Yeon Park, Susan R Conway, Jia-Wei Wang, Detlef Weigel, R Scott Poethig. Cell 2009
920
4

MicroRNA expression profiling using microarrays.
Chang-Gong Liu, George Adrian Calin, Stefano Volinia, Carlo M Croce. Nat Protoc 2008
198
4

Isothermal reactions for the amplification of oligonucleotides.
Jeffrey Van Ness, Lori K Van Ness, David J Galas. Proc Natl Acad Sci U S A 2003
321
4


Repression of flowering by the miR172 target SMZ.
Johannes Mathieu, Levi J Yant, Felix Mürdter, Frank Küttner, Markus Schmid. PLoS Biol 2009
286
4

Discovering microRNAs from deep sequencing data using miRDeep.
Marc R Friedländer, Wei Chen, Catherine Adamidi, Jonas Maaskola, Ralf Einspanier, Signe Knespel, Nikolaus Rajewsky. Nat Biotechnol 2008
873
4


Biological properties of extracellular vesicles and their physiological functions.
María Yáñez-Mó, Pia R-M Siljander, Zoraida Andreu, Apolonija Bedina Zavec, Francesc E Borràs, Edit I Buzas, Krisztina Buzas, Enriqueta Casal, Francesco Cappello, Joana Carvalho,[...]. J Extracell Vesicles 2015
4

Predicting effective microRNA target sites in mammalian mRNAs.
Vikram Agarwal, George W Bell, Jin-Wu Nam, David P Bartel. Elife 2015
4

Widespread changes in protein synthesis induced by microRNAs.
Matthias Selbach, Björn Schwanhäusser, Nadine Thierfelder, Zhuo Fang, Raya Khanin, Nikolaus Rajewsky. Nature 2008
4

Reassessment of Exosome Composition.
Dennis K Jeppesen, Aidan M Fenix, Jeffrey L Franklin, James N Higginbotham, Qin Zhang, Lisa J Zimmerman, Daniel C Liebler, Jie Ping, Qi Liu, Rachel Evans,[...]. Cell 2019
4

Circulating microRNA in body fluid: a new potential biomarker for cancer diagnosis and prognosis.
Nobuyoshi Kosaka, Haruhisa Iguchi, Takahiro Ochiya. Cancer Sci 2010
940
3


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.