A citation-based method for searching scientific literature

Lloyd D Fricker, Jihyeon Lim, Hui Pan, Fa-Yun Che. Mass Spectrom Rev 2006
Times Cited: 159







List of co-cited articles
837 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Peptidomics-based discovery of novel neuropeptides.
Marcus Svensson, Karl Sköld, Per Svenningsson, Per E Andren. J Proteome Res 2003
181
30

Peptides in the brain: mass spectrometry-based measurement approaches and challenges.
Lingjun Li, Jonathan V Sweedler. Annu Rev Anal Chem (Palo Alto Calif) 2008
114
26

Quantitative neuropeptidomics of microwave-irradiated mouse brain and pituitary.
Fa-Yun Che, Jihyeon Lim, Hui Pan, Reeta Biswas, Lloyd D Fricker. Mol Cell Proteomics 2005
125
24


Endogenous peptide discovery of the rat circadian clock: a focused study of the suprachiasmatic nucleus by ultrahigh performance tandem mass spectrometry.
Ji Eun Lee, Norman Atkins, Nathan G Hatcher, Leonid Zamdborg, Martha U Gillette, Jonathan V Sweedler, Neil L Kelleher. Mol Cell Proteomics 2010
64
28

Mass spectrometry-based discovery of circadian peptides.
Nathan G Hatcher, Norman Atkins, Suresh P Annangudi, Andrew J Forbes, Neil L Kelleher, Martha U Gillette, Jonathan V Sweedler. Proc Natl Acad Sci U S A 2008
79
22

SwePep, a database designed for endogenous peptides and mass spectrometry.
Maria Fälth, Karl Sköld, Mathias Norrman, Marcus Svensson, David Fenyö, Per E Andren. Mol Cell Proteomics 2006
102
17

Discovering new invertebrate neuropeptides using mass spectrometry.
Amanda B Hummon, Andinet Amare, Jonathan V Sweedler. Mass Spectrom Rev 2006
123
17

Multiple isotopic labels for quantitative mass spectrometry.
Cain Morano, Xin Zhang, Lloyd D Fricker. Anal Chem 2008
64
25



The significance of biochemical and molecular sample integrity in brain proteomics and peptidomics: stathmin 2-20 and peptides as sample quality indicators.
Karl Sköld, Marcus Svensson, Mathias Norrman, Benita Sjögren, Per Svenningsson, Per E Andrén. Proteomics 2007
94
14

NeuroPred: a tool to predict cleavage sites in neuropeptide precursors and provide the masses of the resulting peptides.
Bruce R Southey, Andinet Amare, Tyler A Zimmerman, Sandra L Rodriguez-Zas, Jonathan V Sweedler. Nucleic Acids Res 2006
161
14

Analysis of peptides in prohormone convertase 1/3 null mouse brain using quantitative peptidomics.
Jonathan H Wardman, Xin Zhang, Sandra Gagnon, Leandro M Castro, Xiaorong Zhu, Donald F Steiner, Robert Day, Lloyd D Fricker. J Neurochem 2010
55
25

Peptidomics.
Geert Baggerman, Peter Verleyen, Elke Clynen, Jurgen Huybrechts, Arnold De Loof, Liliane Schoofs. J Chromatogr B Analyt Technol Biomed Life Sci 2004
120
14

Optimization of neuropeptide extraction from the mouse hypothalamus.
Fa-Yun Che, Xin Zhang, Iryna Berezniuk, Myrasol Callaway, Jihyeon Lim, Lloyd D Fricker. J Proteome Res 2007
51
25

Neuropeptidomic analysis establishes a major role for prohormone convertase-2 in neuropeptide biosynthesis.
Xin Zhang, Hui Pan, Bonnie Peng, Donald F Steiner, John E Pintar, Lloyd D Fricker. J Neurochem 2010
53
24

Peptidomic analysis of human cell lines.
Julia S Gelman, Juan Sironi, Leandro M Castro, Emer S Ferro, Lloyd D Fricker. J Proteome Res 2011
51
25

Neuropeptidomics of the supraoptic rat nucleus.
Adriana Bora, Suresh P Annangudi, Larry J Millet, Stanislav S Rubakhin, Andrew J Forbes, Neil L Kelleher, Martha U Gillette, Jonathan V Sweedler. J Proteome Res 2008
48
25

Peptidomics: the integrated approach of MS, hyphenated techniques and bioinformatics for neuropeptide analysis.
Kurt Boonen, Bart Landuyt, Geert Baggerman, Steven J Husson, Jurgen Huybrechts, Liliane Schoofs. J Sep Sci 2008
64
18

Peptidomics for the discovery and characterization of neuropeptides and hormones.
Elena V Romanova, Jonathan V Sweedler. Trends Pharmacol Sci 2015
49
24

Analytic framework for peptidomics applied to large-scale neuropeptide identification.
Anna Secher, Christian D Kelstrup, Kilian W Conde-Frieboes, Charles Pyke, Kirsten Raun, Birgitte S Wulff, Jesper V Olsen. Nat Commun 2016
69
17

Peptidomics of Cpe(fat/fat) mouse brain regions: implications for neuropeptide processing.
Xin Zhang, Fa-Yun Che, Iryna Berezniuk, Kemal Sonmez, Lawrence Toll, Lloyd D Fricker. J Neurochem 2008
70
15

PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry.
Bin Ma, Kaizhong Zhang, Christopher Hendrie, Chengzhi Liang, Ming Li, Amanda Doherty-Kirby, Gilles Lajoie. Rapid Commun Mass Spectrom 2003
796
11

Peptidomic analysis of HEK293T cells: effect of the proteasome inhibitor epoxomicin on intracellular peptides.
Lloyd D Fricker, Julia S Gelman, Leandro M Castro, Fabio C Gozzo, Emer S Ferro. J Proteome Res 2012
47
23

Intracellular peptides as natural regulators of cell signaling.
Fernanda M Cunha, Denise A Berti, Zulma S Ferreira, Clécio F Klitzke, Regina P Markus, Emer S Ferro. J Biol Chem 2008
73
13

Intracellullar peptides as putative natural regulators of protein interactions.
Emer S Ferro, Stephen Hyslop, Antonio C M Camargo. J Neurochem 2004
64
15

Quantitative peptidomics in mice: effect of cocaine treatment.
Fa-Yun Che, Ilona Vathy, Lloyd D Fricker. J Mol Neurosci 2006
31
32

Peptidomics coming of age: a review of contributions from a bioinformatics angle.
Gerben Menschaert, Tom T M Vandekerckhove, Geert Baggerman, Liliane Schoofs, Walter Luyten, Wim Van Criekinge. J Proteome Res 2010
73
13

PEAKS DB: de novo sequencing assisted database search for sensitive and accurate peptide identification.
Jing Zhang, Lei Xin, Baozhen Shan, Weiwu Chen, Mingjie Xie, Denis Yuen, Weiming Zhang, Zefeng Zhang, Gilles A Lajoie, Bin Ma. Mol Cell Proteomics 2012
610
10

Analysis of intracellular substrates and products of thimet oligopeptidase in human embryonic kidney 293 cells.
Denise A Berti, Cain Morano, Lilian C Russo, Leandro M Castro, Fernanda M Cunha, Xin Zhang, Juan Sironi, Clécio F Klitzke, Emer S Ferro, Lloyd D Fricker. J Biol Chem 2009
54
16


Neuropeptidomics strategies for specific and sensitive identification of endogenous peptides.
Maria Fälth, Karl Sköld, Marcus Svensson, Anna Nilsson, David Fenyö, Per E Andren. Mol Cell Proteomics 2007
41
21

Peptidomics technologies for human body fluids.
M Schrader, P Schulz-Knappe. Trends Biotechnol 2001
131
9

Probability-based protein identification by searching sequence databases using mass spectrometry data.
D N Perkins, D J Pappin, D M Creasy, J S Cottrell. Electrophoresis 1999
9

Quantitative peptidomics reveal brain peptide signatures of behavior.
Axel Brockmann, Suresh P Annangudi, Timothy A Richmond, Seth A Ament, Fang Xie, Bruce R Southey, Sandra R Rodriguez-Zas, Gene E Robinson, Jonathan V Sweedler. Proc Natl Acad Sci U S A 2009
93
9

From the genome to the proteome: uncovering peptides in the Apis brain.
Amanda B Hummon, Timothy A Richmond, Peter Verleyen, Geert Baggerman, Jurgen Huybrechts, Michael A Ewing, Evy Vierstraete, Sandra L Rodriguez-Zas, Liliane Schoofs, Gene E Robinson,[...]. Science 2006
236
9

Peptidomics of the larval Drosophila melanogaster central nervous system.
Geert Baggerman, Anja Cerstiaens, Arnold De Loof, Liliane Schoofs. J Biol Chem 2002
205
9

Neuropeptides--an overview.
T Hökfelt, C Broberger, Z Q Xu, V Sergeyev, R Ubink, M Diez. Neuropharmacology 2000
406
9

Quantitative peptidomics of mice lacking peptide-processing enzymes.
Jonathan Wardman, Lloyd D Fricker. Methods Mol Biol 2011
22
40


Heat stabilization of the tissue proteome: a new technology for improved proteomics.
Marcus Svensson, Mats Boren, Karl Sköld, Maria Fälth, Benita Sjögren, Malin Andersson, Per Svenningsson, Per E Andren. J Proteome Res 2009
111
8

Snapshot peptidomics of the regulated secretory pathway.
Kazuki Sasaki, Yoshinori Satomi, Toshifumi Takao, Naoto Minamino. Mol Cell Proteomics 2009
31
25

Peptidomics: the comprehensive analysis of peptides in complex biological mixtures.
P Schulz-Knappe, H D Zucht, G Heine, M Jürgens, R Hess, M Schrader. Comb Chem High Throughput Screen 2001
156
8


Open mass spectrometry search algorithm.
Lewis Y Geer, Sanford P Markey, Jeffrey A Kowalak, Lukas Wagner, Ming Xu, Dawn M Maynard, Xiaoyu Yang, Wenyao Shi, Stephen H Bryant. J Proteome Res 2004
8

Proteases for processing proneuropeptides into peptide neurotransmitters and hormones.
Vivian Hook, Lydiane Funkelstein, Douglas Lu, Steven Bark, Jill Wegrzyn, Shin-Rong Hwang. Annu Rev Pharmacol Toxicol 2008
172
8

Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods.
Yufeng Shen, Nikola Tolić, Fang Xie, Rui Zhao, Samuel O Purvine, Athena A Schepmoes, Ronald J Moore, Gordon A Anderson, Richard D Smith. J Proteome Res 2011
56
14

Quantitation of endogenous peptides using mass spectrometry based methods.
Elena V Romanova, Sarah E Dowd, Jonathan V Sweedler. Curr Opin Chem Biol 2013
24
33

Functional neuropeptidomics in invertebrates.
Wouter De Haes, Elien Van Sinay, Giel Detienne, Liesbet Temmerman, Liliane Schoofs, Kurt Boonen. Biochim Biophys Acta 2015
28
28


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.