A citation-based method for searching scientific literature

Michael Shogren-Knaak, Haruhiko Ishii, Jian-Min Sun, Michael J Pazin, James R Davie, Craig L Peterson. Science 2006
Times Cited: 1243







List of co-cited articles
1217 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
32

Regulation of chromatin by histone modifications.
Andrew J Bannister, Tony Kouzarides. Cell Res 2011
22

The language of covalent histone modifications.
B D Strahl, C D Allis. Nature 2000
16

Organization of Chromatin by Intrinsic and Regulated Phase Separation.
Bryan A Gibson, Lynda K Doolittle, Maximillian W G Schneider, Liv E Jensen, Nathan Gamarra, Lisa Henry, Daniel W Gerlich, Sy Redding, Michael K Rosen. Cell 2019
261
16

Chromatin fiber folding: requirement for the histone H4 N-terminal tail.
Benedetta Dorigo, Thomas Schalch, Kerstin Bystricky, Timothy J Richmond. J Mol Biol 2003
372
14



The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association.
Abdollah Allahverdi, Renliang Yang, Nikolay Korolev, Yanping Fan, Curt A Davey, Chuan-Fa Liu, Lars Nordenskiöld. Nucleic Acids Res 2011
131
12


Translating the histone code.
T Jenuwein, C D Allis. Science 2001
11

Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.
Curt A Davey, David F Sargent, Karolin Luger, Armin W Maeder, Timothy J Richmond. J Mol Biol 2002
966
11

The molecular hallmarks of epigenetic control.
C David Allis, Thomas Jenuwein. Nat Rev Genet 2016
948
10

Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions.
Alexey K Shaytan, Grigoriy A Armeev, Alexander Goncearenco, Victor B Zhurkin, David Landsman, Anna R Panchenko. J Mol Biol 2016
81
12


Functions of site-specific histone acetylation and deacetylation.
Mona D Shahbazian, Michael Grunstein. Annu Rev Biochem 2007
9

The role of histone tails in the nucleosome: a computational study.
Jochen Erler, Ruihan Zhang, Loukas Petridis, Xiaolin Cheng, Jeremy C Smith, Jörg Langowski. Biophys J 2014
50
18

Nucleosome structure and dynamics are coming of age.
Keda Zhou, Guillaume Gaullier, Karolin Luger. Nat Struct Mol Biol 2019
93
9

Histone core modifications regulating nucleosome structure and dynamics.
Peter Tessarz, Tony Kouzarides. Nat Rev Mol Cell Biol 2014
489
9

Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.
Adam G Larson, Daniel Elnatan, Madeline M Keenen, Michael J Trnka, Jonathan B Johnston, Alma L Burlingame, David A Agard, Sy Redding, Geeta J Narlikar. Nature 2017
679
9

ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells.
Horng D Ou, Sébastien Phan, Thomas J Deerinck, Andrea Thor, Mark H Ellisman, Clodagh C O'Shea. Science 2017
361
9

High-resolution profiling of histone methylations in the human genome.
Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Dustin E Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao. Cell 2007
9

Chromatin Unfolding by Epigenetic Modifications Explained by Dramatic Impairment of Internucleosome Interactions: A Multiscale Computational Study.
Rosana Collepardo-Guevara, Guillem Portella, Michele Vendruscolo, Daan Frenkel, Tamar Schlick, Modesto Orozco. J Am Chem Soc 2015
78
11

Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins.
M Lachner, D O'Carroll, S Rea, K Mechtler, T Jenuwein. Nature 2001
8

ISWI chromatin remodellers sense nucleosome modifications to determine substrate preference.
Geoffrey P Dann, Glen P Liszczak, John D Bagert, Manuel M Müller, Uyen T T Nguyen, Felix Wojcik, Zachary Z Brown, Jeffrey Bos, Tatyana Panchenko, Rasmus Pihl,[...]. Nature 2017
86
9

The conformation of the histone H3 tail inhibits association of the BPTF PHD finger with the nucleosome.
Emma A Morrison, Samuel Bowerman, Kelli L Sylvers, Jeff Wereszczynski, Catherine A Musselman. Elife 2018
40
20

A brief review of nucleosome structure.
Amber R Cutter, Jeffrey J Hayes. FEBS Lett 2015
129
8

Cryo-EM study of the chromatin fiber reveals a double helix twisted by tetranucleosomal units.
Feng Song, Ping Chen, Dapeng Sun, Mingzhu Wang, Liping Dong, Dan Liang, Rui-Ming Xu, Ping Zhu, Guohong Li. Science 2014
338
8

Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes.
Cedric R Clapier, Janet Iwasa, Bradley R Cairns, Craig L Peterson. Nat Rev Mol Cell Biol 2017
357
8


Phase separation drives heterochromatin domain formation.
Amy R Strom, Alexander V Emelyanov, Mustafa Mir, Dmitry V Fyodorov, Xavier Darzacq, Gary H Karpen. Nature 2017
729
8

Chromatin challenges during DNA replication and repair.
Anja Groth, Walter Rocha, Alain Verreault, Geneviève Almouzni. Cell 2007
523
7

New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?
Karolin Luger, Mekonnen L Dechassa, David J Tremethick. Nat Rev Mol Cell Biol 2012
388
7



Combinatorial patterns of histone acetylations and methylations in the human genome.
Zhibin Wang, Chongzhi Zang, Jeffrey A Rosenfeld, Dustin E Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q Zhang,[...]. Nat Genet 2008
7


Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
7

Coactivator condensation at super-enhancers links phase separation and gene control.
Benjamin R Sabari, Alessandra Dall'Agnese, Ann Boija, Isaac A Klein, Eliot L Coffey, Krishna Shrinivas, Brian J Abraham, Nancy M Hannett, Alicia V Zamudio, John C Manteiga,[...]. Science 2018
729
7

Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo.
Maria Aurelia Ricci, Carlo Manzo, María Filomena García-Parajo, Melike Lakadamyali, Maria Pia Cosma. Cell 2015
308
7

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C.
Tsung-Han S Hsieh, Assaf Weiner, Bryan Lajoie, Job Dekker, Nir Friedman, Oliver J Rando. Cell 2015
280
7

Regulation of Nucleosome Stacking and Chromatin Compaction by the Histone H4 N-Terminal Tail-H2A Acidic Patch Interaction.
Qinming Chen, Renliang Yang, Nikolay Korolev, Chuan Fa Liu, Lars Nordenskiöld. J Mol Biol 2017
39
17

Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1.
Jan Bednar, Isabel Garcia-Saez, Ramachandran Boopathi, Amber R Cutter, Gabor Papai, Anna Reymer, Sajad H Syed, Imtiaz Nisar Lone, Ognyan Tonchev, Corinne Crucifix,[...]. Mol Cell 2017
119
7

HP1 reshapes nucleosome core to promote phase separation of heterochromatin.
S Sanulli, M J Trnka, V Dharmarajan, R W Tibble, B D Pascal, A L Burlingame, P R Griffin, J D Gross, G J Narlikar. Nature 2019
146
7

Super-resolution microscopy reveals how histone tail acetylation affects DNA compaction within nucleosomes in vivo.
Jason Otterstrom, Alvaro Castells-Garcia, Chiara Vicario, Pablo A Gomez-Garcia, Maria Pia Cosma, Melike Lakadamyali. Nucleic Acids Res 2019
30
23

Histone H4 K16Q mutation, an acetylation mimic, causes structural disorder of its N-terminal basic patch in the nucleosome.
Bing-Rui Zhou, Hanqiao Feng, Rodolfo Ghirlando, Hidenori Kato, James Gruschus, Yawen Bai. J Mol Biol 2012
50
12

Histone H2B ubiquitylation disrupts local and higher-order chromatin compaction.
Beat Fierz, Champak Chatterjee, Robert K McGinty, Maya Bar-Dagan, Daniel P Raleigh, Tom W Muir. Nat Chem Biol 2011
284
6

Rapid spontaneous accessibility of nucleosomal DNA.
Gu Li, Marcia Levitus, Carlos Bustamante, Jonathan Widom. Nat Struct Mol Biol 2005
444
6

Role of histone tails in structural stability of the nucleosome.
Mithun Biswas, Karine Voltz, Jeremy C Smith, Jörg Langowski. PLoS Comput Biol 2011
71
8

Nucleosome arrays reveal the two-start organization of the chromatin fiber.
Benedetta Dorigo, Thomas Schalch, Alexandra Kulangara, Sylwia Duda, Rasmus R Schroeder, Timothy J Richmond. Science 2004
375
6

hMOF histone acetyltransferase is required for histone H4 lysine 16 acetylation in mammalian cells.
Mikko Taipale, Stephen Rea, Karsten Richter, Ana Vilar, Peter Lichter, Axel Imhof, Asifa Akhtar. Mol Cell Biol 2005
213
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.