A citation-based method for searching scientific literature

Masaaki Komatsu, Satoshi Waguri, Tomoki Chiba, Shigeo Murata, Jun-ichi Iwata, Isei Tanida, Takashi Ueno, Masato Koike, Yasuo Uchiyama, Eiki Kominami, Keiji Tanaka. Nature 2006
Times Cited: 2544







List of co-cited articles
1487 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Suppression of basal autophagy in neural cells causes neurodegenerative disease in mice.
Taichi Hara, Kenji Nakamura, Makoto Matsui, Akitsugu Yamamoto, Yohko Nakahara, Rika Suzuki-Migishima, Minesuke Yokoyama, Kenji Mishima, Ichiro Saito, Hideyuki Okano,[...]. Nature 2006
70

Essential role for autophagy protein Atg7 in the maintenance of axonal homeostasis and the prevention of axonal degeneration.
Masaaki Komatsu, Qing Jun Wang, Gay R Holstein, Victor L Friedrich, Jun-ichi Iwata, Eiki Kominami, Brian T Chait, Keiji Tanaka, Zhenyu Yue. Proc Natl Acad Sci U S A 2007
436
18

AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1.
Joungmok Kim, Mondira Kundu, Benoit Viollet, Kun-Liang Guan. Nat Cell Biol 2011
17

Extensive involvement of autophagy in Alzheimer disease: an immuno-electron microscopy study.
Ralph A Nixon, Jerzy Wegiel, Asok Kumar, Wai Haung Yu, Corrinne Peterhoff, Anne Cataldo, Ana Maria Cuervo. J Neuropathol Exp Neurol 2005
984
17

Inhibition of mTOR induces autophagy and reduces toxicity of polyglutamine expansions in fly and mouse models of Huntington disease.
Brinda Ravikumar, Coralie Vacher, Zdenek Berger, Janet E Davies, Shouqing Luo, Lourdes G Oroz, Francesco Scaravilli, Douglas F Easton, Rainer Duden, Cahir J O'Kane,[...]. Nat Genet 2004
16

Autophagy and Neurodegeneration: Pathogenic Mechanisms and Therapeutic Opportunities.
Fiona M Menzies, Angeleen Fleming, Andrea Caricasole, Carla F Bento, Stephen P Andrews, Avraham Ashkenazi, Jens Füllgrabe, Anne Jackson, Maria Jimenez Sanchez, Cansu Karabiyik,[...]. Neuron 2017
500
16


The coming of age of chaperone-mediated autophagy.
Susmita Kaushik, Ana Maria Cuervo. Nat Rev Mol Cell Biol 2018
379
14

Autophagy induction and autophagosome clearance in neurons: relationship to autophagic pathology in Alzheimer's disease.
Barry Boland, Asok Kumar, Sooyeon Lee, Frances M Platt, Jerzy Wegiel, W Haung Yu, Ralph A Nixon. J Neurosci 2008
745
11

Mechanism and medical implications of mammalian autophagy.
Ivan Dikic, Zvulun Elazar. Nat Rev Mol Cell Biol 2018
893
11

Compromised autophagy and neurodegenerative diseases.
Fiona M Menzies, Angeleen Fleming, David C Rubinsztein. Nat Rev Neurosci 2015
452
11

The role of autophagy during the early neonatal starvation period.
Akiko Kuma, Masahiko Hatano, Makoto Matsui, Akitsugu Yamamoto, Haruaki Nakaya, Tamotsu Yoshimori, Yoshinori Ohsumi, Takeshi Tokuhisa, Noboru Mizushima. Nature 2004
11

TFEB links autophagy to lysosomal biogenesis.
Carmine Settembre, Chiara Di Malta, Vinicia Assunta Polito, Moises Garcia Arencibia, Francesco Vetrini, Serkan Erdin, Serpil Uckac Erdin, Tuong Huynh, Diego Medina, Pasqualina Colella,[...]. Science 2011
11

Mitophagy inhibits amyloid-β and tau pathology and reverses cognitive deficits in models of Alzheimer's disease.
Evandro F Fang, Yujun Hou, Konstantinos Palikaras, Bryan A Adriaanse, Jesse S Kerr, Beimeng Yang, Sofie Lautrup, Md Mahdi Hasan-Olive, Domenica Caponio, Xiuli Dan,[...]. Nat Neurosci 2019
413
11

Genome-wide analysis reveals mechanisms modulating autophagy in normal brain aging and in Alzheimer's disease.
Marta M Lipinski, Bin Zheng, Tao Lu, Zhenyu Yan, Bénédicte F Py, Aylwin Ng, Ramnik J Xavier, Cheng Li, Bruce A Yankner, Clemens R Scherzer,[...]. Proc Natl Acad Sci U S A 2010
391
10



Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
Daniel J Klionsky, Kotb Abdelmohsen, Akihisa Abe, Md Joynal Abedin, Hagai Abeliovich, Abraham Acevedo Arozena, Hiroaki Adachi, Christopher M Adams, Peter D Adams, Khosrow Adeli,[...]. Autophagy 2016
10

Autophagy: renovation of cells and tissues.
Noboru Mizushima, Masaaki Komatsu. Cell 2011
10



The autophagy-related protein beclin 1 shows reduced expression in early Alzheimer disease and regulates amyloid beta accumulation in mice.
Fiona Pickford, Eliezer Masliah, Markus Britschgi, Kurt Lucin, Ramya Narasimhan, Philipp A Jaeger, Scott Small, Brian Spencer, Edward Rockenstein, Beth Levine,[...]. J Clin Invest 2008
749
9

The hallmarks of aging.
Carlos López-Otín, Maria A Blasco, Linda Partridge, Manuel Serrano, Guido Kroemer. Cell 2013
9

Overexpression of Atg5 in mice activates autophagy and extends lifespan.
Jong-Ok Pyo, Seung-Min Yoo, Hye-Hyun Ahn, Jihoon Nah, Se-Hoon Hong, Tae-In Kam, Sunmin Jung, Yong-Keun Jung. Nat Commun 2013
372
9

Nutrient-dependent mTORC1 association with the ULK1-Atg13-FIP200 complex required for autophagy.
Nao Hosokawa, Taichi Hara, Takeshi Kaizuka, Chieko Kishi, Akito Takamura, Yutaka Miura, Shun-ichiro Iemura, Tohru Natsume, Kenji Takehana, Naoyuki Yamada,[...]. Mol Biol Cell 2009
8

Homeostatic levels of p62 control cytoplasmic inclusion body formation in autophagy-deficient mice.
Masaaki Komatsu, Satoshi Waguri, Masato Koike, Yu-Shin Sou, Takashi Ueno, Taichi Hara, Noboru Mizushima, Jun-Ichi Iwata, Junji Ezaki, Shigeo Murata,[...]. Cell 2007
8

TFEB-mediated autophagy rescues midbrain dopamine neurons from α-synuclein toxicity.
Mickael Decressac, Bengt Mattsson, Pia Weikop, Martin Lundblad, Johan Jakobsson, Anders Björklund. Proc Natl Acad Sci U S A 2013
420
8

Inhibition of mTOR by rapamycin abolishes cognitive deficits and reduces amyloid-beta levels in a mouse model of Alzheimer's disease.
Patricia Spilman, Natalia Podlutskaya, Matthew J Hart, Jayanta Debnath, Olivia Gorostiza, Dale Bredesen, Arlan Richardson, Randy Strong, Veronica Galvan. PLoS One 2010
657
8

A LRRK2-Dependent EndophilinA Phosphoswitch Is Critical for Macroautophagy at Presynaptic Terminals.
Sandra-Fausia Soukup, Sabine Kuenen, Roeland Vanhauwaert, Julia Manetsberger, Sergio Hernández-Díaz, Jef Swerts, Nils Schoovaerts, Sven Vilain, Natalia V Gounko, Katlijn Vints,[...]. Neuron 2016
123
8

Autophagy maintains stemness by preventing senescence.
Laura García-Prat, Marta Martínez-Vicente, Eusebio Perdiguero, Laura Ortet, Javier Rodríguez-Ubreva, Elena Rebollo, Vanessa Ruiz-Bonilla, Susana Gutarra, Esteban Ballestar, Antonio L Serrano,[...]. Nature 2016
633
8

Regulation of presynaptic neurotransmission by macroautophagy.
Daniela Hernandez, Ciara A Torres, Wanda Setlik, Carolina Cebrián, Eugene V Mosharov, Guomei Tang, Hsiao-Chun Cheng, Nikolai Kholodilov, Olga Yarygina, Robert E Burke,[...]. Neuron 2012
193
8

Autophagy in the presynaptic compartment in health and disease.
Vinoy Vijayan, Patrik Verstreken. J Cell Biol 2017
90
8

Modulation of Autophagy by BDNF Underlies Synaptic Plasticity.
Vassiliki Nikoletopoulou, Kyriaki Sidiropoulou, Emmanouela Kallergi, Yannis Dalezios, Nektarios Tavernarakis. Cell Metab 2017
109
8

Autophagy failure in Alzheimer's disease--locating the primary defect.
Ralph A Nixon, Dun-Sheng Yang. Neurobiol Dis 2011
385
8

Compartment-Specific Regulation of Autophagy in Primary Neurons.
Sandra Maday, Erika L F Holzbaur. J Neurosci 2016
140
8

A lysosome-to-nucleus signalling mechanism senses and regulates the lysosome via mTOR and TFEB.
Carmine Settembre, Roberto Zoncu, Diego L Medina, Francesco Vetrini, Serkan Erdin, SerpilUckac Erdin, Tuong Huynh, Mathieu Ferron, Gerard Karsenty, Michel C Vellard,[...]. EMBO J 2012
8

p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death.
Geir Bjørkøy, Trond Lamark, Andreas Brech, Heidi Outzen, Maria Perander, Aud Overvatn, Harald Stenmark, Terje Johansen. J Cell Biol 2005
8

p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy.
Serhiy Pankiv, Terje Høyvarde Clausen, Trond Lamark, Andreas Brech, Jack-Ansgar Bruun, Heidi Outzen, Aud Øvervatn, Geir Bjørkøy, Terje Johansen. J Biol Chem 2007
8

Loss of autophagy in dopaminergic neurons causes Lewy pathology and motor dysfunction in aged mice.
Shigeto Sato, Toshiki Uchihara, Takahiro Fukuda, Sachiko Noda, Hiromi Kondo, Shinji Saiki, Masaaki Komatsu, Yasuo Uchiyama, Keiji Tanaka, Nobutaka Hattori. Sci Rep 2018
57
14

Promoting the clearance of neurotoxic proteins in neurodegenerative disorders of ageing.
Barry Boland, Wai Haung Yu, Olga Corti, Bertrand Mollereau, Alexandre Henriques, Erwan Bezard, Greg M Pastores, David C Rubinsztein, Ralph A Nixon, Michael R Duchen,[...]. Nat Rev Drug Discov 2018
190
8

Impairment of starvation-induced and constitutive autophagy in Atg7-deficient mice.
Masaaki Komatsu, Satoshi Waguri, Takashi Ueno, Junichi Iwata, Shigeo Murata, Isei Tanida, Junji Ezaki, Noboru Mizushima, Yoshinori Ohsumi, Yasuo Uchiyama,[...]. J Cell Biol 2005
8

Ubiquitinated TDP-43 in frontotemporal lobar degeneration and amyotrophic lateral sclerosis.
Manuela Neumann, Deepak M Sampathu, Linda K Kwong, Adam C Truax, Matthew C Micsenyi, Thomas T Chou, Jennifer Bruce, Theresa Schuck, Murray Grossman, Christopher M Clark,[...]. Science 2006
7

Macroautophagy--a novel Beta-amyloid peptide-generating pathway activated in Alzheimer's disease.
W Haung Yu, Ana Maria Cuervo, Asok Kumar, Corrinne M Peterhoff, Stephen D Schmidt, Ju-Hyun Lee, Panaiyur S Mohan, Marc Mercken, Mark R Farmery, Lars O Tjernberg,[...]. J Cell Biol 2005
695
7

Promoting basal levels of autophagy in the nervous system enhances longevity and oxidant resistance in adult Drosophila.
Anne Simonsen, Robert C Cumming, Andreas Brech, Pauline Isakson, David R Schubert, Kim D Finley. Autophagy 2008
438
7

Autophagy in the pathogenesis of disease.
Beth Levine, Guido Kroemer. Cell 2008
7

Neuronal stimulation induces autophagy in hippocampal neurons that is involved in AMPA receptor degradation after chemical long-term depression.
Mohammad Shehata, Hiroyuki Matsumura, Reiko Okubo-Suzuki, Noriaki Ohkawa, Kaoru Inokuchi. J Neurosci 2012
170
7

Aggregate-prone proteins with polyglutamine and polyalanine expansions are degraded by autophagy.
Brinda Ravikumar, Rainer Duden, David C Rubinsztein. Hum Mol Genet 2002
828
7

In vivo analysis of autophagy in response to nutrient starvation using transgenic mice expressing a fluorescent autophagosome marker.
Noboru Mizushima, Akitsugu Yamamoto, Makoto Matsui, Tamotsu Yoshimori, Yoshinori Ohsumi. Mol Biol Cell 2004
7

Rapamycin alleviates toxicity of different aggregate-prone proteins.
Zdenek Berger, Brinda Ravikumar, Fiona M Menzies, Lourdes Garcia Oroz, Benjamin R Underwood, Menelas N Pangalos, Ina Schmitt, Ullrich Wullner, Bernd O Evert, Cahir J O'Kane,[...]. Hum Mol Genet 2006
489
7



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.