A citation-based method for searching scientific literature

M E J Newman. Proc Natl Acad Sci U S A 2006
Times Cited: 2162







List of co-cited articles
414 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Collective dynamics of 'small-world' networks.
D J Watts, S H Strogatz. Nature 1998
15

Finding and evaluating community structure in networks.
M E J Newman, M Girvan. Phys Rev E Stat Nonlin Soft Matter Phys 2004
14


Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
10

Community structure in social and biological networks.
M Girvan, M E J Newman. Proc Natl Acad Sci U S A 2002
9


Molecular ecological network analyses.
Ye Deng, Yi-Huei Jiang, Yunfeng Yang, Zhili He, Feng Luo, Jizhong Zhou. BMC Bioinformatics 2012
519
7

Using network analysis to explore co-occurrence patterns in soil microbial communities.
Albert Barberán, Scott T Bates, Emilio O Casamayor, Noah Fierer. ISME J 2012
753
7

Functional cartography of complex metabolic networks.
Roger Guimerà, Luís A Nunes Amaral. Nature 2005
7

Finding community structure in very large networks.
Aaron Clauset, M E J Newman, Cristopher Moore. Phys Rev E Stat Nonlin Soft Matter Phys 2004
768
6

Resolution limit in community detection.
Santo Fortunato, Marc Barthélemy. Proc Natl Acad Sci U S A 2007
458
6

The modularity of pollination networks.
Jens M Olesen, Jordi Bascompte, Yoko L Dupont, Pedro Jordano. Proc Natl Acad Sci U S A 2007
498
6

Hierarchical modularity in human brain functional networks.
David Meunier, Renaud Lambiotte, Alex Fornito, Karen D Ersche, Edward T Bullmore. Front Neuroinform 2009
296
6

QIIME allows analysis of high-throughput community sequencing data.
J Gregory Caporaso, Justin Kuczynski, Jesse Stombaugh, Kyle Bittinger, Frederic D Bushman, Elizabeth K Costello, Noah Fierer, Antonio Gonzalez Peña, Julia K Goodrich, Jeffrey I Gordon,[...]. Nat Methods 2010
6

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.
Christian Quast, Elmar Pruesse, Pelin Yilmaz, Jan Gerken, Timmy Schweer, Pablo Yarza, Jörg Peplies, Frank Oliver Glöckner. Nucleic Acids Res 2013
6


Microbial interactions: from networks to models.
Karoline Faust, Jeroen Raes. Nat Rev Microbiol 2012
988
6

Modular Brain Networks.
Olaf Sporns, Richard F Betzel. Annu Rev Psychol 2016
417
5

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
5

The economy of brain network organization.
Ed Bullmore, Olaf Sporns. Nat Rev Neurosci 2012
5


Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion.
Jonathan D Power, Kelly A Barnes, Abraham Z Snyder, Bradley L Schlaggar, Steven E Petersen. Neuroimage 2012
5

Dynamic reconfiguration of human brain networks during learning.
Danielle S Bassett, Nicholas F Wymbs, Mason A Porter, Peter J Mucha, Jean M Carlson, Scott T Grafton. Proc Natl Acad Sci U S A 2011
737
5

Emergence of scaling in random networks
Barabasi, Albert. Science 1999
5


Sparse inverse covariance estimation with the graphical lasso.
Jerome Friedman, Trevor Hastie, Robert Tibshirani. Biostatistics 2008
4

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
4

Anticorrelations in resting state networks without global signal regression.
Xiaoqian J Chai, Alfonso Nieto Castañón, Dost Ongür, Susan Whitfield-Gabrieli. Neuroimage 2012
597
4

Functional network organization of the human brain.
Jonathan D Power, Alexander L Cohen, Steven M Nelson, Gagan S Wig, Kelly Anne Barnes, Jessica A Church, Alecia C Vogel, Timothy O Laumann, Fran M Miezin, Bradley L Schlaggar,[...]. Neuron 2011
4

Modular and hierarchically modular organization of brain networks.
David Meunier, Renaud Lambiotte, Edward T Bullmore. Front Neurosci 2010
469
4

The organization of the human cerebral cortex estimated by intrinsic functional connectivity.
B T Thomas Yeo, Fenna M Krienen, Jorge Sepulcre, Mert R Sabuncu, Danial Lashkari, Marisa Hollinshead, Joshua L Roffman, Jordan W Smoller, Lilla Zöllei, Jonathan R Polimeni,[...]. J Neurophysiol 2011
4


Functional molecular ecological networks.
Jizhong Zhou, Ye Deng, Feng Luo, Zhili He, Qichao Tu, Xiaoyang Zhi. mBio 2010
281
4

UCHIME improves sensitivity and speed of chimera detection.
Robert C Edgar, Brian J Haas, Jose C Clemente, Christopher Quince, Rob Knight. Bioinformatics 2011
4

Conn: a functional connectivity toolbox for correlated and anticorrelated brain networks.
Susan Whitfield-Gabrieli, Alfonso Nieto-Castanon. Brain Connect 2012
4

Prediction of individual brain maturity using fMRI.
Nico U F Dosenbach, Binyam Nardos, Alexander L Cohen, Damien A Fair, Jonathan D Power, Jessica A Church, Steven M Nelson, Gagan S Wig, Alecia C Vogel, Christina N Lessov-Schlaggar,[...]. Science 2010
4

Inferring correlation networks from genomic survey data.
Jonathan Friedman, Eric J Alm. PLoS Comput Biol 2012
727
4

The modular and integrative functional architecture of the human brain.
Maxwell A Bertolero, B T Thomas Yeo, Mark D'Esposito. Proc Natl Acad Sci U S A 2015
202
4


An integrative theory of prefrontal cortex function.
E K Miller, J D Cohen. Annu Rev Neurosci 2001
4

Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain.
N Tzourio-Mazoyer, B Landeau, D Papathanassiou, F Crivello, O Etard, N Delcroix, B Mazoyer, M Joliot. Neuroimage 2002
4

Efficient behavior of small-world networks.
V Latora, M Marchiori. Phys Rev Lett 2001
4

Functional and effective connectivity: a review.
Karl J Friston. Brain Connect 2011
3

Estimating psychological networks and their accuracy: A tutorial paper.
Sacha Epskamp, Denny Borsboom, Eiko I Fried. Behav Res Methods 2018
553
3

The nested assembly of plant-animal mutualistic networks.
Jordi Bascompte, Pedro Jordano, Carlos J Melián, Jens M Olesen. Proc Natl Acad Sci U S A 2003
654
3

An Introduction to the Analysis of Single-Cell RNA-Sequencing Data.
Aisha A AlJanahi, Mark Danielsen, Cynthia E Dunbar. Mol Ther Methods Clin Dev 2018
44
6

Brain graphs: graphical models of the human brain connectome.
Edward T Bullmore, Danielle S Bassett. Annu Rev Clin Psychol 2011
571
3

Toward discovery science of human brain function.
Bharat B Biswal, Maarten Mennes, Xi-Nian Zuo, Suril Gohel, Clare Kelly, Steve M Smith, Christian F Beckmann, Jonathan S Adelstein, Randy L Buckner, Stan Colcombe,[...]. Proc Natl Acad Sci U S A 2010
3

Evidence for hubs in human functional brain networks.
Jonathan D Power, Bradley L Schlaggar, Christina N Lessov-Schlaggar, Steven E Petersen. Neuron 2013
375
3



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.