A citation-based method for searching scientific literature

N R Voss, M Gerstein, T A Steitz, P B Moore. J Mol Biol 2006
Times Cited: 206







List of co-cited articles
878 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Cotranslational Protein Folding inside the Ribosome Exit Tunnel.
Ola B Nilsson, Rickard Hedman, Jacopo Marino, Stephan Wickles, Lukas Bischoff, Magnus Johansson, Annika Müller-Lucks, Fabio Trovato, Joseph D Puglisi, Edward P O'Brien,[...]. Cell Rep 2015
134
36

The ribosome modulates nascent protein folding.
Christian M Kaiser, Daniel H Goldman, John D Chodera, Ignacio Tinoco, Carlos Bustamante. Science 2011
172
27

Tertiary interactions within the ribosomal exit tunnel.
Andrey Kosolapov, Carol Deutsch. Nat Struct Mol Biol 2009
90
24

Folding zones inside the ribosomal exit tunnel.
Jianli Lu, Carol Deutsch. Nat Struct Mol Biol 2005
168
22

Ribosome. Mechanical force releases nascent chain-mediated ribosome arrest in vitro and in vivo.
Daniel H Goldman, Christian M Kaiser, Anthony Milin, Maurizio Righini, Ignacio Tinoco, Carlos Bustamante. Science 2015
116
21

alpha-Helical nascent polypeptide chains visualized within distinct regions of the ribosomal exit tunnel.
Shashi Bhushan, Marco Gartmann, Mario Halic, Jean-Paul Armache, Alexander Jarasch, Thorsten Mielke, Otto Berninghausen, Daniel N Wilson, Roland Beckmann. Nat Struct Mol Biol 2010
134
20

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
N Ban, P Nissen, J Hansen, P B Moore, T A Steitz. Science 2000
19

The structural basis of ribosome activity in peptide bond synthesis.
P Nissen, J Hansen, N Ban, P B Moore, T A Steitz. Science 2000
19

The ribosomal exit tunnel functions as a discriminating gate.
Hitoshi Nakatogawa, Koreaki Ito. Cell 2002
364
19

Arrest peptides: cis-acting modulators of translation.
Koreaki Ito, Shinobu Chiba. Annu Rev Biochem 2013
133
19

New scenarios of protein folding can occur on the ribosome.
Edward P O'Brien, John Christodoulou, Michele Vendruscolo, Christopher M Dobson. J Am Chem Soc 2011
74
22

A biphasic pulling force acts on transmembrane helices during translocon-mediated membrane integration.
Nurzian Ismail, Rickard Hedman, Nina Schiller, Gunnar von Heijne. Nat Struct Mol Biol 2012
96
17

SecM-stalled ribosomes adopt an altered geometry at the peptidyl transferase center.
Shashi Bhushan, Thomas Hoffmann, Birgit Seidelt, Jens Frauenfeld, Thorsten Mielke, Otto Berninghausen, Daniel N Wilson, Roland Beckmann. PLoS Biol 2011
96
17

Cotranslational protein folding on the ribosome monitored in real time.
Wolf Holtkamp, Goran Kokic, Marcus Jäger, Joerg Mittelstaet, Anton A Komar, Marina V Rodnina. Science 2015
113
16


Protein folding on the ribosome.
Lisa D Cabrita, Christopher M Dobson, John Christodoulou. Curr Opin Struct Biol 2010
94
14

Transient ribosomal attenuation coordinates protein synthesis and co-translational folding.
Gong Zhang, Magdalena Hubalewska, Zoya Ignatova. Nat Struct Mol Biol 2009
369
14


The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins.
Günter Kramer, Daniel Boehringer, Nenad Ban, Bernd Bukau. Nat Struct Mol Biol 2009
319
13


Transient tertiary structure formation within the ribosome exit port.
Edward P O'Brien, Shang-Te Danny Hsu, John Christodoulou, Michele Vendruscolo, Christopher M Dobson. J Am Chem Soc 2010
55
23



Ribosome exit tunnel can entropically stabilize alpha-helices.
Guy Ziv, Gilad Haran, D Thirumalai. Proc Natl Acad Sci U S A 2005
102
12

Protein folding. Translational tuning optimizes nascent protein folding in cells.
Soo Jung Kim, Jae Seok Yoon, Hideki Shishido, Zhongying Yang, LeeAnn A Rooney, Jose M Barral, William R Skach. Science 2015
124
12

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
11

Structural insight into nascent polypeptide chain-mediated translational stalling.
Birgit Seidelt, C Axel Innis, Daniel N Wilson, Marco Gartmann, Jean-Paul Armache, Elizabeth Villa, Leonardo G Trabuco, Thomas Becker, Thorsten Mielke, Klaus Schulten,[...]. Science 2009
194
11

Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo.
Eugene Oh, Annemarie H Becker, Arzu Sandikci, Damon Huber, Rachna Chaba, Felix Gloge, Robert J Nichols, Athanasios Typas, Carol A Gross, Günter Kramer,[...]. Cell 2011
280
11

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
11


Positively charged residues are the major determinants of ribosomal velocity.
Catherine A Charneski, Laurence D Hurst. PLoS Biol 2013
170
11

Electrostatic effect of the ribosomal surface on nascent polypeptide dynamics.
Anders M Knight, Peter H Culviner, Neşe Kurt-Yilmaz, Taisong Zou, S Banu Ozkan, Silvia Cavagnero. ACS Chem Biol 2013
46
23

Translation regulation via nascent polypeptide-mediated ribosome stalling.
Daniel N Wilson, Stefan Arenz, Roland Beckmann. Curr Opin Struct Biol 2016
81
13

Trigger Factor Reduces the Force Exerted on the Nascent Chain by a Cotranslationally Folding Protein.
Ola B Nilsson, Annika Müller-Lucks, Günter Kramer, Bernd Bukau, Gunnar von Heijne. J Mol Biol 2016
40
27

Small protein domains fold inside the ribosome exit tunnel.
Jacopo Marino, Gunnar von Heijne, Roland Beckmann. FEBS Lett 2016
42
26

Cotranslational folding of spectrin domains via partially structured states.
Ola B Nilsson, Adrian A Nickson, Jeffrey J Hollins, Stephan Wickles, Annette Steward, Roland Beckmann, Gunnar von Heijne, Jane Clarke. Nat Struct Mol Biol 2017
52
21

Mechanisms of SecM-mediated stalling in the ribosome.
James Gumbart, Eduard Schreiner, Daniel N Wilson, Roland Beckmann, Klaus Schulten. Biophys J 2012
52
19

Structure of the 70S ribosome complexed with mRNA and tRNA.
Maria Selmer, Christine M Dunham, Frank V Murphy, Albert Weixlbaumer, Sabine Petry, Ann C Kelley, John R Weir, V Ramakrishnan. Science 2006
931
10

Cotranslational structure acquisition of nascent polypeptides monitored by NMR spectroscopy.
Cédric Eichmann, Steffen Preissler, Roland Riek, Elke Deuerling. Proc Natl Acad Sci U S A 2010
66
15


In vivo translation rates can substantially delay the cotranslational folding of the Escherichia coli cytosolic proteome.
Prajwal Ciryam, Richard I Morimoto, Michele Vendruscolo, Christopher M Dobson, Edward P O'Brien. Proc Natl Acad Sci U S A 2013
58
17

A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding.
Lisa D Cabrita, AnaÏs M E Cassaignau, Helene M M Launay, Christopher A Waudby, Tomasz Wlodarski, Carlo Camilloni, Maria-Evangelia Karyadi, Amy L Robertson, Xiaolin Wang, Anne S Wentink,[...]. Nat Struct Mol Biol 2016
77
12

In vivo aspects of protein folding and quality control.
David Balchin, Manajit Hayer-Hartl, F Ulrich Hartl. Science 2016
566
10

The shape of the bacterial ribosome exit tunnel affects cotranslational protein folding.
Renuka Kudva, Pengfei Tian, Fátima Pardo-Avila, Marta Carroni, Robert B Best, Harris D Bernstein, Gunnar von Heijne. Elife 2018
26
38

Protein folding at the exit tunnel.
Daria V Fedyukina, Silvia Cavagnero. Annu Rev Biophys 2011
63
14


L23 protein functions as a chaperone docking site on the ribosome.
Günter Kramer, Thomas Rauch, Wolfgang Rist, Sonja Vorderwülbecke, Holger Patzelt, Agnes Schulze-Specking, Nenad Ban, Elke Deuerling, Bernd Bukau. Nature 2002
245
9

Trigger factor in complex with the ribosome forms a molecular cradle for nascent proteins.
Lars Ferbitz, Timm Maier, Holger Patzelt, Bernd Bukau, Elke Deuerling, Nenad Ban. Nature 2004
268
9


Global profiling of SRP interaction with nascent polypeptides.
Daniela Schibich, Felix Gloge, Ina Pöhner, Patrik Björkholm, Rebecca C Wade, Gunnar von Heijne, Bernd Bukau, Günter Kramer. Nature 2016
72
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.