A citation-based method for searching scientific literature

Xuan Hoi Pham, Géraldine Farge, Yonghong Shi, Martina Gaspari, Claes M Gustafsson, Maria Falkenberg. J Biol Chem 2006
Times Cited: 91







List of co-cited articles
921 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA.
Maria Falkenberg, Martina Gaspari, Anja Rantanen, Aleksandra Trifunovic, Nils-Göran Larsson, Claes M Gustafsson. Nat Genet 2002
417
36



Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
30

Mitochondrial RNA polymerase is needed for activation of the origin of light-strand DNA replication.
Javier Miralles Fusté, Sjoerd Wanrooij, Elisabeth Jemt, Caroline E Granycome, Tricia J Cluett, Yonghong Shi, Neli Atanassova, Ian J Holt, Claes M Gustafsson, Maria Falkenberg. Mol Cell 2010
124
30


DNA replication and transcription in mammalian mitochondria.
Maria Falkenberg, Nils-Göran Larsson, Claes M Gustafsson. Annu Rev Biochem 2007
443
28


Replication of vertebrate mitochondrial DNA entails transient ribonucleotide incorporation throughout the lagging strand.
Takehiro Yasukawa, Aurelio Reyes, Tricia J Cluett, Ming-Yao Yang, Mark Bowmaker, Howard T Jacobs, Ian J Holt. EMBO J 2006
158
27

Human mitochondrial RNA polymerase primes lagging-strand DNA synthesis in vitro.
Sjoerd Wanrooij, Javier Miralles Fusté, Géraldine Farge, Yonghong Shi, Claes M Gustafsson, Maria Falkenberg. Proc Natl Acad Sci U S A 2008
117
27

Reconstitution of a minimal mtDNA replisome in vitro.
Jenny A Korhonen, Xuan Hoi Pham, Mina Pellegrini, Maria Falkenberg. EMBO J 2004
257
26

G-quadruplex structures in RNA stimulate mitochondrial transcription termination and primer formation.
Paulina H Wanrooij, Jay P Uhler, Tomas Simonsson, Maria Falkenberg, Claes M Gustafsson. Proc Natl Acad Sci U S A 2010
108
24



Biased incorporation of ribonucleotides on the mitochondrial L-strand accounts for apparent strand-asymmetric DNA replication.
Ming Yao Yang, Mark Bowmaker, Aurelio Reyes, Lodovica Vergani, Paolo Angeli, Enrico Gringeri, Howard T Jacobs, Ian J Holt. Cell 2002
201
23


Mammalian mitochondrial DNA replicates bidirectionally from an initiation zone.
Mark Bowmaker, Ming Yao Yang, Takehiro Yasukawa, Aurelio Reyes, Howard T Jacobs, Joel A Huberman, Ian J Holt. J Biol Chem 2003
145
20

A hybrid G-quadruplex structure formed between RNA and DNA explains the extraordinary stability of the mitochondrial R-loop.
Paulina H Wanrooij, Jay P Uhler, Yonghong Shi, Fredrik Westerlund, Maria Falkenberg, Claes M Gustafsson. Nucleic Acids Res 2012
93
20

TEFM (c17orf42) is necessary for transcription of human mtDNA.
Michal Minczuk, Jiuya He, Anna M Duch, Thijs J Ettema, Aleksander Chlebowski, Karol Dzionek, Leo G J Nijtmans, Martijn A Huynen, Ian J Holt. Nucleic Acids Res 2011
100
20

Human mitochondrial DNA deletions associated with mutations in the gene encoding Twinkle, a phage T7 gene 4-like protein localized in mitochondria.
J N Spelbrink, F Y Li, V Tiranti, K Nikali, Q P Yuan, M Tariq, S Wanrooij, N Garrido, G Comi, L Morandi,[...]. Nat Genet 2001
603
19

Replication of mitochondrial DNA occurs by strand displacement with alternative light-strand origins, not via a strand-coupled mechanism.
Timothy A Brown, Ciro Cecconi, Ariana N Tkachuk, Carlos Bustamante, David A Clayton. Genes Dev 2005
127
18



Maintenance and Expression of Mammalian Mitochondrial DNA.
Claes M Gustafsson, Maria Falkenberg, Nils-Göran Larsson. Annu Rev Biochem 2016
266
18

A bidirectional origin of replication maps to the major noncoding region of human mitochondrial DNA.
Takehiro Yasukawa, Ming-Yao Yang, Howard T Jacobs, Ian J Holt. Mol Cell 2005
125
17

Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA.
R M Andrews, I Kubacka, P F Chinnery, R N Lightowlers, D M Turnbull, N Howell. Nat Genet 1999
17

The mitochondrial transcription factor TFAM coordinates the assembly of multiple DNA molecules into nucleoid-like structures.
Brett A Kaufman, Nela Durisic, Jeffrey M Mativetsky, Santiago Costantino, Mark A Hancock, Peter Grutter, Eric A Shoubridge. Mol Biol Cell 2007
261
17

Mitochondrial transcription factor A regulates mtDNA copy number in mammals.
Mats I Ekstrand, Maria Falkenberg, Anja Rantanen, Chan Bae Park, Martina Gaspari, Kjell Hultenby, Pierre Rustin, Claes M Gustafsson, Nils-Göran Larsson. Hum Mol Genet 2004
571
16

The mitochondrial RNA polymerase contributes critically to promoter specificity in mammalian cells.
Martina Gaspari, Maria Falkenberg, Nils-Göran Larsson, Claes M Gustafsson. EMBO J 2004
117
16


Premature ageing in mice expressing defective mitochondrial DNA polymerase.
Aleksandra Trifunovic, Anna Wredenberg, Maria Falkenberg, Johannes N Spelbrink, Anja T Rovio, Carl E Bruder, Mohammad Bohlooly-Y, Sebastian Gidlöf, Anders Oldfors, Rolf Wibom,[...]. Nature 2004
16


Failure to produce mitochondrial DNA results in embryonic lethality in Rnaseh1 null mice.
Susana M Cerritelli, Ella G Frolova, Chiguang Feng, Alexander Grinberg, Paul E Love, Robert J Crouch. Mol Cell 2003
223
16

Replication of mitochondrial DNA. Circular replicative intermediates in mouse L cells.
D L Robberson, H Kasamatsu, J Vinograd. Proc Natl Acad Sci U S A 1972
201
16

Mitochondrial DNA replication proceeds via a 'bootlace' mechanism involving the incorporation of processed transcripts.
Aurelio Reyes, Lawrence Kazak, Stuart R Wood, Takehiro Yasukawa, Howard T Jacobs, Ian J Holt. Nucleic Acids Res 2013
74
20

Super-resolution microscopy reveals that mammalian mitochondrial nucleoids have a uniform size and frequently contain a single copy of mtDNA.
Christian Kukat, Christian A Wurm, Henrik Spåhr, Maria Falkenberg, Nils-Göran Larsson, Stefan Jakobs. Proc Natl Acad Sci U S A 2011
299
16

TEFM is a potent stimulator of mitochondrial transcription elongation in vitro.
Viktor Posse, Saba Shahzad, Maria Falkenberg, B Martin Hällberg, Claes M Gustafsson. Nucleic Acids Res 2015
49
30

Mitochondrial biology. Replication-transcription switch in human mitochondria.
Karen Agaronyan, Yaroslav I Morozov, Michael Anikin, Dmitry Temiakov. Science 2015
97
16



Termination factor-mediated DNA loop between termination and initiation sites drives mitochondrial rRNA synthesis.
Miguel Martin, Jaehyoung Cho, Anthony J Cesare, Jack D Griffith, Giuseppe Attardi. Cell 2005
131
15


Identification of initiation sites for heavy-strand and light-strand transcription in human mitochondrial DNA.
J Montoya, T Christianson, D Levens, M Rabinowitz, G Attardi. Proc Natl Acad Sci U S A 1982
210
15

Loss-of-function mutations in MGME1 impair mtDNA replication and cause multisystemic mitochondrial disease.
Cornelia Kornblum, Thomas J Nicholls, Tobias B Haack, Susanne Schöler, Viktoriya Peeva, Katharina Danhauser, Kerstin Hallmann, Gábor Zsurka, Joanna Rorbach, Arcangela Iuso,[...]. Nat Genet 2013
133
15

Mammalian mitochondrial DNA replication intermediates are essentially duplex but contain extensive tracts of RNA/DNA hybrid.
Jaakko L O Pohjoismäki, J Bradley Holmes, Stuart R Wood, Ming-Yao Yang, Takehiro Yasukawa, Aurelio Reyes, Laura J Bailey, Tricia J Cluett, Steffi Goffart, Smaranda Willcox,[...]. J Mol Biol 2010
89
14

In D-loop: 40 years of mitochondrial 7S DNA.
Thomas J Nicholls, Michal Minczuk. Exp Gerontol 2014
120
14

Cross-strand binding of TFAM to a single mtDNA molecule forms the mitochondrial nucleoid.
Christian Kukat, Karen M Davies, Christian A Wurm, Henrik Spåhr, Nina A Bonekamp, Inge Kühl, Friederike Joos, Paola Loguercio Polosa, Chan Bae Park, Viktor Posse,[...]. Proc Natl Acad Sci U S A 2015
168
14

In vivo occupancy of mitochondrial single-stranded DNA binding protein supports the strand displacement mode of DNA replication.
Javier Miralles Fusté, Yonghong Shi, Sjoerd Wanrooij, Xuefeng Zhu, Elisabeth Jemt, Örjan Persson, Nasim Sabouri, Claes M Gustafsson, Maria Falkenberg. PLoS Genet 2014
85
15


Replication and transcription of mammalian mitochondrial DNA.
Patricio Fernández-Silva, José A Enriquez, Julio Montoya. Exp Physiol 2003
249
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.