A citation-based method for searching scientific literature

Maria Selmer, Christine M Dunham, Frank V Murphy, Albert Weixlbaumer, Sabine Petry, Ann C Kelley, John R Weir, V Ramakrishnan. Science 2006
Times Cited: 931







List of co-cited articles
1099 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
22

Structures of the bacterial ribosome at 3.5 A resolution.
Barbara S Schuwirth, Maria A Borovinskaya, Cathy W Hau, Wen Zhang, Antón Vila-Sanjurjo, James M Holton, Jamie H Doudna Cate. Science 2005
966
20

PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Paul D Adams, Pavel V Afonine, Gábor Bunkóczi, Vincent B Chen, Ian W Davis, Nathaniel Echols, Jeffrey J Headd, Li-Wei Hung, Gary J Kapral, Ralf W Grosse-Kunstleve,[...]. Acta Crystallogr D Biol Crystallogr 2010
20

Features and development of Coot.
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
17

Crystal structure of the ribosome at 5.5 A resolution.
M M Yusupov, G Z Yusupova, A Baucom, K Lieberman, T N Earnest, J H Cate, H F Noller. Science 2001
16

Structure of the 30S ribosomal subunit.
B T Wimberly, D E Brodersen, W M Clemons, R J Morgan-Warren, A P Carter, C Vonrhein, T Hartsch, V Ramakrishnan. Nature 2000
16

Selection of tRNA by the ribosome requires a transition from an open to a closed form.
James M Ogle, Frank V Murphy, Michael J Tarry, V Ramakrishnan. Cell 2002
460
15


Structural aspects of messenger RNA reading frame maintenance by the ribosome.
Lasse B Jenner, Natalia Demeshkina, Gulnara Yusupova, Marat Yusupov. Nat Struct Mol Biol 2010
200
15

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy.
Shawn Q Zheng, Eugene Palovcak, Jean-Paul Armache, Kliment A Verba, Yifan Cheng, David A Agard. Nat Methods 2017
14

Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements.
Andrei Korostelev, Sergei Trakhanov, Martin Laurberg, Harry F Noller. Cell 2006
364
14

A new understanding of the decoding principle on the ribosome.
Natalia Demeshkina, Lasse Jenner, Eric Westhof, Marat Yusupov, Gulnara Yusupova. Nature 2012
206
13

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
N Ban, P Nissen, J Hansen, P B Moore, T A Steitz. Science 2000
13

The structural basis of ribosome activity in peptide bond synthesis.
P Nissen, J Hansen, N Ban, P B Moore, T A Steitz. Science 2000
13

Crystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation.
Jie Zhou, Laura Lancaster, John Paul Donohue, Harry F Noller. Science 2013
154
13

Recognition of cognate transfer RNA by the 30S ribosomal subunit.
J M Ogle, D E Brodersen, W M Clemons , M J Tarry, A P Carter, V Ramakrishnan. Science 2001
835
12

Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.
Maria A Borovinskaya, Raj D Pai, Wen Zhang, Barbara S Schuwirth, James M Holton, Go Hirokawa, Hideko Kaji, Akira Kaji, Jamie H Doudna Cate. Nat Struct Mol Biol 2007
225
12

The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
709
12


Structural insights into the role of rRNA modifications in protein synthesis and ribosome assembly.
Yury S Polikanov, Sergey V Melnikov, Dieter Söll, Thomas A Steitz. Nat Struct Mol Biol 2015
115
12

Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics.
A P Carter, W M Clemons, D E Brodersen, R J Morgan-Warren, B T Wimberly, V Ramakrishnan. Nature 2000
11

XDS.
Wolfgang Kabsch. Acta Crystallogr D Biol Crystallogr 2010
11

Ribosome. The structure of the human mitochondrial ribosome.
Alexey Amunts, Alan Brown, Jaan Toots, Sjors H W Scheres, V Ramakrishnan. Science 2015
270
11

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding.
Jack A Dunkle, Leyi Wang, Michael B Feldman, Arto Pulk, Vincent B Chen, Gary J Kapral, Jonas Noeske, Jane S Richardson, Scott C Blanchard, Jamie H Doudna Cate. Science 2011
251
11

How the ribosome hands the A-site tRNA to the P site during EF-G-catalyzed translocation.
Jie Zhou, Laura Lancaster, John Paul Donohue, Harry F Noller. Science 2014
104
11

Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites.
Andreas H Ratje, Justus Loerke, Aleksandra Mikolajka, Matthias Brünner, Peter W Hildebrand, Agata L Starosta, Alexandra Dönhöfer, Sean R Connell, Paola Fucini, Thorsten Mielke,[...]. Nature 2010
245
11

Elongation factor G bound to the ribosome in an intermediate state of translocation.
David S Tourigny, Israel S Fernández, Ann C Kelley, V Ramakrishnan. Science 2013
159
11

Structure of the E. coli ribosome-EF-Tu complex at <3 Å resolution by Cs-corrected cryo-EM.
Niels Fischer, Piotr Neumann, Andrey L Konevega, Lars V Bock, Ralf Ficner, Marina V Rodnina, Holger Stark. Nature 2015
239
10

The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA.
T Martin Schmeing, Rebecca M Voorhees, Ann C Kelley, Yong-Gui Gao, Frank V Murphy, John R Weir, V Ramakrishnan. Science 2009
345
10

Ensemble cryo-EM elucidates the mechanism of translation fidelity.
Anna B Loveland, Gabriel Demo, Nikolaus Grigorieff, Andrei A Korostelev. Nature 2017
85
11

Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome.
Rebecca M Voorhees, Albert Weixlbaumer, David Loakes, Ann C Kelley, V Ramakrishnan. Nat Struct Mol Biol 2009
245
10

Coot: model-building tools for molecular graphics.
Paul Emsley, Kevin Cowtan. Acta Crystallogr D Biol Crystallogr 2004
10

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Yury S Polikanov, Thomas A Steitz, C Axel Innis. Nat Struct Mol Biol 2014
108
10

Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation.
Tanweer Hussain, Jose L Llácer, Brian T Wimberly, Jeffrey S Kieft, V Ramakrishnan. Cell 2016
65
13

Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code.
Alexey Rozov, Natalia Demeshkina, Iskander Khusainov, Eric Westhof, Marat Yusupov, Gulnara Yusupova. Nat Commun 2016
84
10

Structural insights into translational fidelity.
James M Ogle, V Ramakrishnan. Annu Rev Biochem 2005
395
9


Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome.
Basil J Greber, Philipp Bieri, Marc Leibundgut, Alexander Leitner, Ruedi Aebersold, Daniel Boehringer, Nenad Ban. Science 2015
238
9

High-resolution structure of the Escherichia coli ribosome.
Jonas Noeske, Michael R Wasserman, Daniel S Terry, Roger B Altman, Scott C Blanchard, Jamie H D Cate. Nat Struct Mol Biol 2015
131
9

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.
Eva Kummer, Marc Leibundgut, Oliver Rackham, Richard G Lee, Daniel Boehringer, Aleksandra Filipovska, Nenad Ban. Nature 2018
48
18

Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Samuel Hong, S Sunita, Tatsuya Maehigashi, Eric D Hoffer, Jack A Dunkle, Christine M Dunham. Proc Natl Acad Sci U S A 2018
17
52

The structure of the ribosome with elongation factor G trapped in the posttranslocational state.
Yong-Gui Gao, Maria Selmer, Christine M Dunham, Albert Weixlbaumer, Ann C Kelley, V Ramakrishnan. Science 2009
345
9

One core, two shells: bacterial and eukaryotic ribosomes.
Sergey Melnikov, Adam Ben-Shem, Nicolas Garreau de Loubresse, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Nat Struct Mol Biol 2012
220
9

Translation in Prokaryotes.
Marina V Rodnina. Cold Spring Harb Perspect Biol 2018
79
11

New tools for automated high-resolution cryo-EM structure determination in RELION-3.
Jasenko Zivanov, Takanori Nakane, Björn O Forsberg, Dari Kimanius, Wim Jh Hagen, Erik Lindahl, Sjors Hw Scheres. Elife 2018
9

Structural basis for translation termination on the 70S ribosome.
Martin Laurberg, Haruichi Asahara, Andrei Korostelev, Jianyu Zhu, Sergei Trakhanov, Harry F Noller. Nature 2008
243
8

High resolution structure of the large ribosomal subunit from a mesophilic eubacterium.
J Harms, F Schluenzen, R Zarivach, A Bashan, S Gat, I Agmon, H Bartels, F Franceschi, A Yonath. Cell 2001
676
8

The mechanism for activation of GTP hydrolysis on the ribosome.
Rebecca M Voorhees, T Martin Schmeing, Ann C Kelley, V Ramakrishnan. Science 2010
250
8


A new system for naming ribosomal proteins.
Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton,[...]. Curr Opin Struct Biol 2014
312
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.