A citation-based method for searching scientific literature

Shyam Prabhakar, James P Noonan, Svante Pääbo, Edward M Rubin. Science 2006
Times Cited: 249







List of co-cited articles
1199 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


An RNA gene expressed during cortical development evolved rapidly in humans.
Katherine S Pollard, Sofie R Salama, Nelle Lambert, Marie-Alexandra Lambot, Sandra Coppens, Jakob S Pedersen, Sol Katzman, Bryan King, Courtney Onodera, Adam Siepel,[...]. Nature 2006
558
53

Forces shaping the fastest evolving regions in the human genome.
Katherine S Pollard, Sofie R Salama, Bryan King, Andrew D Kern, Tim Dreszer, Sol Katzman, Adam Siepel, Jakob S Pedersen, Gill Bejerano, Robert Baertsch,[...]. PLoS Genet 2006
258
49


Many human accelerated regions are developmental enhancers.
John A Capra, Genevieve D Erwin, Gabriel McKinsey, John L R Rubenstein, Katherine S Pollard. Philos Trans R Soc Lond B Biol Sci 2013
94
40

A high-resolution map of human evolutionary constraint using 29 mammals.
Kerstin Lindblad-Toh, Manuel Garber, Or Zuk, Michael F Lin, Brian J Parker, Stefan Washietl, Pouya Kheradpour, Jason Ernst, Gregory Jordan, Evan Mauceli,[...]. Nature 2011
670
36

Fast-evolving noncoding sequences in the human genome.
Christine P Bird, Barbara E Stranger, Maureen Liu, Daryl J Thomas, Catherine E Ingle, Claude Beazley, Webb Miller, Matthew E Hurles, Emmanouil T Dermitzakis. Genome Biol 2007
99
36

Human-specific loss of regulatory DNA and the evolution of human-specific traits.
Cory Y McLean, Philip L Reno, Alex A Pollen, Abraham I Bassan, Terence D Capellini, Catherine Guenther, Vahan B Indjeian, Xinhong Lim, Douglas B Menke, Bruce T Schaar,[...]. Nature 2011
260
34

Human-specific gain of function in a developmental enhancer.
Shyam Prabhakar, Axel Visel, Jennifer A Akiyama, Malak Shoukry, Keith D Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R Fitzpatrick, Veena Afzal,[...]. Science 2008
202
34

Human-chimpanzee differences in a FZD8 enhancer alter cell-cycle dynamics in the developing neocortex.
J Lomax Boyd, Stephanie L Skove, Jeremy P Rouanet, Louis-Jan Pilaz, Tristan Bepler, Raluca Gordân, Gregory A Wray, Debra L Silver. Curr Biol 2015
110
26

Comprehensive identification and analysis of human accelerated regulatory DNA.
Rachel M Gittelman, Enna Hun, Ferhat Ay, Jennifer Madeoy, Len Pennacchio, William S Noble, R David Hawkins, Joshua M Akey. Genome Res 2015
48
54



Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
Adam Siepel, Gill Bejerano, Jakob S Pedersen, Angie S Hinrichs, Minmei Hou, Kate Rosenbloom, Hiram Clawson, John Spieth, Ladeana W Hillier, Stephen Richards,[...]. Genome Res 2005
21



Evolutionary genomics. Evolutionary changes in promoter and enhancer activity during human corticogenesis.
Steven K Reilly, Jun Yin, Albert E Ayoub, Deena Emera, Jing Leng, Justin Cotney, Richard Sarro, Pasko Rakic, James P Noonan. Science 2015
121
21

A draft sequence of the Neandertal genome.
Richard E Green, Johannes Krause, Adrian W Briggs, Tomislav Maricic, Udo Stenzel, Martin Kircher, Nick Patterson, Heng Li, Weiwei Zhai, Markus Hsi-Yang Fritz,[...]. Science 2010
20

The developmental brain gene NPAS3 contains the largest number of accelerated regulatory sequences in the human genome.
Gretel B Kamm, Francisco Pisciottano, Rafi Kliger, Lucía F Franchini. Mol Biol Evol 2013
50
40

The complete genome sequence of a Neanderthal from the Altai Mountains.
Kay Prüfer, Fernando Racimo, Nick Patterson, Flora Jay, Sriram Sankararaman, Susanna Sawyer, Anja Heinze, Gabriel Renaud, Peter H Sudmant, Cesare de Filippo,[...]. Nature 2014
882
19

Inhibition of SRGAP2 function by its human-specific paralogs induces neoteny during spine maturation.
Cécile Charrier, Kaumudi Joshi, Jaeda Coutinho-Budd, Ji-Eun Kim, Nelle Lambert, Jacqueline de Marchena, Wei-Lin Jin, Pierre Vanderhaeghen, Anirvan Ghosh, Takayuki Sassa,[...]. Cell 2012
219
19

Molecular evolution of FOXP2, a gene involved in speech and language.
Wolfgang Enard, Molly Przeworski, Simon E Fisher, Cecilia S L Lai, Victor Wiebe, Takashi Kitano, Anthony P Monaco, Svante Pääbo. Nature 2002
639
18

Detection of nonneutral substitution rates on mammalian phylogenies.
Katherine S Pollard, Melissa J Hubisz, Kate R Rosenbloom, Adam Siepel. Genome Res 2010
18

Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication.
Megan Y Dennis, Xander Nuttle, Peter H Sudmant, Francesca Antonacci, Tina A Graves, Mikhail Nefedov, Jill A Rosenfeld, Saba Sajjadian, Maika Malig, Holland Kotkiewicz,[...]. Cell 2012
199
17

GREAT improves functional interpretation of cis-regulatory regions.
Cory Y McLean, Dave Bristor, Michael Hiller, Shoa L Clarke, Bruce T Schaar, Craig B Lowe, Aaron M Wenger, Gill Bejerano. Nat Biotechnol 2010
17

The evolution of lineage-specific regulatory activities in the human embryonic limb.
Justin Cotney, Jing Leng, Jun Yin, Steven K Reilly, Laura E DeMare, Deena Emera, Albert E Ayoub, Pasko Rakic, James P Noonan. Cell 2013
127
17

In vivo enhancer analysis of human conserved non-coding sequences.
Len A Pennacchio, Nadav Ahituv, Alan M Moses, Shyam Prabhakar, Marcelo A Nobrega, Malak Shoukry, Simon Minovitsky, Inna Dubchak, Amy Holt, Keith D Lewis,[...]. Nature 2006
816
17

Cortical evolution: judge the brain by its cover.
Daniel H Geschwind, Pasko Rakic. Neuron 2013
282
17

Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion.
Marta Florio, Mareike Albert, Elena Taverna, Takashi Namba, Holger Brandl, Eric Lewitus, Christiane Haffner, Alex Sykes, Fong Kuan Wong, Jula Peters,[...]. Science 2015
284
17

Functional and evolutionary insights into human brain development through global transcriptome analysis.
Matthew B Johnson, Yuka Imamura Kawasawa, Christopher E Mason, Zeljka Krsnik, Giovanni Coppola, Darko Bogdanović, Daniel H Geschwind, Shrikant M Mane, Matthew W State, Nenad Sestan. Neuron 2009
400
16

Transcriptional landscape of the prenatal human brain.
Jeremy A Miller, Song-Lin Ding, Susan M Sunkin, Kimberly A Smith, Lydia Ng, Aaron Szafer, Amanda Ebbert, Zackery L Riley, Joshua J Royall, Kaylynn Aiona,[...]. Nature 2014
634
16

Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution.
Ralph Haygood, Olivier Fedrigo, Brian Hanson, Ken-Daigoro Yokoyama, Gregory A Wray. Nat Genet 2007
194
16

Contrasts between adaptive coding and noncoding changes during human evolution.
Ralph Haygood, Courtney C Babbitt, Olivier Fedrigo, Gregory A Wray. Proc Natl Acad Sci U S A 2010
63
25

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
15

A humanized version of Foxp2 affects cortico-basal ganglia circuits in mice.
Wolfgang Enard, Sabine Gehre, Kurt Hammerschmidt, Sabine M Hölter, Torsten Blass, Mehmet Somel, Martina K Brückner, Christiane Schreiweis, Christine Winter, Reinhard Sohr,[...]. Cell 2009
282
15

VISTA Enhancer Browser--a database of tissue-specific human enhancers.
Axel Visel, Simon Minovitsky, Inna Dubchak, Len A Pennacchio. Nucleic Acids Res 2007
622
15

Function and regulation of AUTS2, a gene implicated in autism and human evolution.
Nir Oksenberg, Laurie Stevison, Jeffrey D Wall, Nadav Ahituv. PLoS Genet 2013
89
15

Evolution of genetic and genomic features unique to the human lineage.
Majesta O'Bleness, Veronica B Searles, Ajit Varki, Pascal Gagneux, James M Sikela. Nat Rev Genet 2012
82
17

ChIP-seq accurately predicts tissue-specific activity of enhancers.
Axel Visel, Matthew J Blow, Zirong Li, Tao Zhang, Jennifer A Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen,[...]. Nature 2009
14

Development and evolution of the human neocortex.
Jan H Lui, David V Hansen, Arnold R Kriegstein. Cell 2011
705
14

Human-specific transcriptional networks in the brain.
Genevieve Konopka, Tara Friedrich, Jeremy Davis-Turak, Kellen Winden, Michael C Oldham, Fuying Gao, Leslie Chen, Guang-Zhong Wang, Rui Luo, Todd M Preuss,[...]. Neuron 2012
150
14

Mutations in Human Accelerated Regions Disrupt Cognition and Social Behavior.
Ryan N Doan, Byoung-Il Bae, Beatriz Cubelos, Cindy Chang, Amer A Hossain, Samira Al-Saad, Nahit M Mukaddes, Ozgur Oner, Muna Al-Saffar, Soher Balkhy,[...]. Cell 2016
112
14

Spatio-temporal transcriptome of the human brain.
Hyo Jung Kang, Yuka Imamura Kawasawa, Feng Cheng, Ying Zhu, Xuming Xu, Mingfeng Li, André M M Sousa, Mihovil Pletikos, Kyle A Meyer, Goran Sedmak,[...]. Nature 2011
13

The evolution of gene expression levels in mammalian organs.
David Brawand, Magali Soumillon, Anamaria Necsulea, Philippe Julien, Gábor Csárdi, Patrick Harrigan, Manuela Weier, Angélica Liechti, Ayinuer Aximu-Petri, Martin Kircher,[...]. Nature 2011
691
13

A fast-evolving human NPAS3 enhancer gained reporter expression in the developing forebrain of transgenic mice.
Gretel B Kamm, Rodrigo López-Leal, Juan R Lorenzo, Lucía F Franchini. Philos Trans R Soc Lond B Biol Sci 2013
24
54


A forkhead-domain gene is mutated in a severe speech and language disorder.
C S Lai, S E Fisher, J A Hurst, F Vargha-Khadem, A P Monaco. Nature 2001
996
12


A high-coverage genome sequence from an archaic Denisovan individual.
Matthias Meyer, Martin Kircher, Marie-Theres Gansauge, Heng Li, Fernando Racimo, Swapan Mallick, Joshua G Schraiber, Flora Jay, Kay Prüfer, Cesare de Filippo,[...]. Science 2012
851
12

An integrated map of genetic variation from 1,092 human genomes.
Goncalo R Abecasis, Adam Auton, Lisa D Brooks, Mark A DePristo, Richard M Durbin, Robert E Handsaker, Hyun Min Kang, Gabor T Marth, Gil A McVean. Nature 2012
12

The role of GC-biased gene conversion in shaping the fastest evolving regions of the human genome.
Dennis Kostka, Melissa J Hubisz, Adam Siepel, Katherine S Pollard. Mol Biol Evol 2012
47
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.