A citation-based method for searching scientific literature

Kevin Donnelly. Stud Health Technol Inform 2006
Times Cited: 162







List of co-cited articles
247 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Disease Ontology: a backbone for disease semantic integration.
Lynn Marie Schriml, Cesar Arze, Suvarna Nadendla, Yu-Wei Wayne Chang, Mark Mazaitis, Victor Felix, Gang Feng, Warren Alden Kibbe. Nucleic Acids Res 2012
396
10

Medical Subject Headings (MeSH).
C E Lipscomb. Bull Med Libr Assoc 2000
319
10


MIMIC-III, a freely accessible critical care database.
Alistair E W Johnson, Tom J Pollard, Lu Shen, Li-Wei H Lehman, Mengling Feng, Mohammad Ghassemi, Benjamin Moody, Peter Szolovits, Leo Anthony Celi, Roger G Mark. Sci Data 2016
9

The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease.
Peter N Robinson, Sebastian Köhler, Sebastian Bauer, Dominik Seelow, Denise Horn, Stefan Mundlos. Am J Hum Genet 2008
507
8

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
M Ashburner, C A Ball, J A Blake, D Botstein, H Butler, J M Cherry, A P Davis, K Dolinski, S S Dwight, J T Eppig,[...]. Nat Genet 2000
8

LOINC, a universal standard for identifying laboratory observations: a 5-year update.
Clement J McDonald, Stanley M Huff, Jeffrey G Suico, Gilbert Hill, Dennis Leavelle, Raymond Aller, Arden Forrey, Kathy Mercer, Georges DeMoor, John Hook,[...]. Clin Chem 2003
267
8

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data.
Warren A Kibbe, Cesar Arze, Victor Felix, Elvira Mitraka, Evan Bolton, Gang Fu, Christopher J Mungall, Janos X Binder, James Malone, Drashtti Vasant,[...]. Nucleic Acids Res 2015
331
7

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.
Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J Mungall,[...]. Nat Biotechnol 2007
7

2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text.
Özlem Uzuner, Brett R South, Shuying Shen, Scott L DuVall. J Am Med Inform Assoc 2011
379
7

BioBERT: a pre-trained biomedical language representation model for biomedical text mining.
Jinhyuk Lee, Wonjin Yoon, Sungdong Kim, Donghyeon Kim, Sunkyu Kim, Chan Ho So, Jaewoo Kang. Bioinformatics 2020
474
7

Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.
Guergana K Savova, James J Masanz, Philip V Ogren, Jiaping Zheng, Sunghwan Sohn, Karin C Kipper-Schuler, Christopher G Chute. J Am Med Inform Assoc 2010
773
6

An overview of MetaMap: historical perspective and recent advances.
Alan R Aronson, François-Michel Lang. J Am Med Inform Assoc 2010
555
6

Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers.
George Hripcsak, Jon D Duke, Nigam H Shah, Christian G Reich, Vojtech Huser, Martijn J Schuemie, Marc A Suchard, Rae Woong Park, Ian Chi Kei Wong, Peter R Rijnbeek,[...]. Stud Health Technol Inform 2015
449
6



DNorm: disease name normalization with pairwise learning to rank.
Robert Leaman, Rezarta Islamaj Dogan, Zhiyong Lu. Bioinformatics 2013
184
5

Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders.
Ada Hamosh, Alan F Scott, Joanna S Amberger, Carol A Bocchini, Victor A McKusick. Nucleic Acids Res 2005
5

The SIDER database of drugs and side effects.
Michael Kuhn, Ivica Letunic, Lars Juhl Jensen, Peer Bork. Nucleic Acids Res 2016
398
4

DrugBank 4.0: shedding new light on drug metabolism.
Vivian Law, Craig Knox, Yannick Djoumbou, Tim Jewison, An Chi Guo, Yifeng Liu, Adam Maciejewski, David Arndt, Michael Wilson, Vanessa Neveu,[...]. Nucleic Acids Res 2014
4

Mining electronic health records: towards better research applications and clinical care.
Peter B Jensen, Lars J Jensen, Søren Brunak. Nat Rev Genet 2012
586
4

Entrez Gene: gene-centered information at NCBI.
Donna Maglott, Jim Ostell, Kim D Pruitt, Tatiana Tatusova. Nucleic Acids Res 2005
620
4

Uberon, an integrative multi-species anatomy ontology.
Christopher J Mungall, Carlo Torniai, Georgios V Gkoutos, Suzanna E Lewis, Melissa A Haendel. Genome Biol 2012
301
4

BioPortal: ontologies and integrated data resources at the click of a mouse.
Natalya F Noy, Nigam H Shah, Patricia L Whetzel, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Daniel L Rubin, Margaret-Anne Storey, Christopher G Chute,[...]. Nucleic Acids Res 2009
310
4

Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2).
Shawn N Murphy, Griffin Weber, Michael Mendis, Vivian Gainer, Henry C Chueh, Susanne Churchill, Isaac Kohane. J Am Med Inform Assoc 2010
546
4

BioCreative V CDR task corpus: a resource for chemical disease relation extraction.
Jiao Li, Yueping Sun, Robin J Johnson, Daniela Sciaky, Chih-Hsuan Wei, Robert Leaman, Allan Peter Davis, Carolyn J Mattingly, Thomas C Wiegers, Zhiyong Lu. Database (Oxford) 2016
83
4

NCBI disease corpus: a resource for disease name recognition and concept normalization.
Rezarta Islamaj Doğan, Robert Leaman, Zhiyong Lu. J Biomed Inform 2014
135
4

The human disease network.
Kwang-Il Goh, Michael E Cusick, David Valle, Barton Childs, Marc Vidal, Albert-László Barabási. Proc Natl Acad Sci U S A 2007
4

BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications.
Patricia L Whetzel, Natalya F Noy, Nigam H Shah, Paul R Alexander, Csongor Nyulas, Tania Tudorache, Mark A Musen. Nucleic Acids Res 2011
282
4

Research electronic data capture (REDCap)--a metadata-driven methodology and workflow process for providing translational research informatics support.
Paul A Harris, Robert Taylor, Robert Thielke, Jonathon Payne, Nathaniel Gonzalez, Jose G Conde. J Biomed Inform 2009
4

Dermatologist-level classification of skin cancer with deep neural networks.
Andre Esteva, Brett Kuprel, Roberto A Novoa, Justin Ko, Susan M Swetter, Helen M Blau, Sebastian Thrun. Nature 2017
4

Development of the Logical Observation Identifier Names and Codes (LOINC) vocabulary.
S M Huff, R A Rocha, C J McDonald, G J De Moor, T Fiers, W D Bidgood, A W Forrey, W G Francis, W R Tracy, D Leavelle,[...]. J Am Med Inform Assoc 1998
140
3

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013.
Janna Hastings, Paula de Matos, Adriano Dekker, Marcus Ennis, Bhavana Harsha, Namrata Kale, Venkatesh Muthukrishnan, Gareth Owen, Steve Turner, Mark Williams,[...]. Nucleic Acids Res 2013
345
3

The Ontology for Biomedical Investigations.
Anita Bandrowski, Ryan Brinkman, Mathias Brochhausen, Matthew H Brush, Bill Bug, Marcus C Chibucos, Kevin Clancy, Mélanie Courtot, Dirk Derom, Michel Dumontier,[...]. PLoS One 2016
92
3

Auditing the semantic completeness of SNOMED CT using formal concept analysis.
Guoqian Jiang, Christopher G Chute. J Am Med Inform Assoc 2009
34
8

Diagnosis code assignment: models and evaluation metrics.
Adler Perotte, Rimma Pivovarov, Karthik Natarajan, Nicole Weiskopf, Frank Wood, Noémie Elhadad. J Am Med Inform Assoc 2014
60
5

NCI Thesaurus: a semantic model integrating cancer-related clinical and molecular information.
Nicholas Sioutos, Sherri de Coronado, Margaret W Haber, Frank W Hartel, Wen-Ling Shaiu, Lawrence W Wright. J Biomed Inform 2007
181
3

Text summarization in the biomedical domain: a systematic review of recent research.
Rashmi Mishra, Jiantao Bian, Marcelo Fiszman, Charlene R Weir, Siddhartha Jonnalagadda, Javed Mostafa, Guilherme Del Fiol. J Biomed Inform 2014
56
5

A simple algorithm for identifying negated findings and diseases in discharge summaries.
W W Chapman, W Bridewell, P Hanbury, G F Cooper, B G Buchanan. J Biomed Inform 2001
442
3

Large-scale, Exhaustive Lattice-based Structural Auditing of SNOMED CT.
Guo-Qiang Zhang, Olivier Bodenreider. AMIA Annu Symp Proc 2010
32
9

Mining non-lattice subgraphs for detecting missing hierarchical relations and concepts in SNOMED CT.
Licong Cui, Wei Zhu, Shiqiang Tao, James T Case, Olivier Bodenreider, Guo-Qiang Zhang. J Am Med Inform Assoc 2017
26
11

The DDI corpus: an annotated corpus with pharmacological substances and drug-drug interactions.
María Herrero-Zazo, Isabel Segura-Bedmar, Paloma Martínez, Thierry Declerck. J Biomed Inform 2013
110
3

Building a semantically annotated corpus of clinical texts.
Angus Roberts, Robert Gaizauskas, Mark Hepple, George Demetriou, Yikun Guo, Ian Roberts, Andrea Setzer. J Biomed Inform 2009
56
5

Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features.
Azadeh Nikfarjam, Abeed Sarker, Karen O'Connor, Rachel Ginn, Graciela Gonzalez. J Am Med Inform Assoc 2015
174
3

Corpus annotation for mining biomedical events from literature.
Jin-Dong Kim, Tomoko Ohta, Jun'ichi Tsujii. BMC Bioinformatics 2008
106
3


On the creation of a clinical gold standard corpus in Spanish: Mining adverse drug reactions.
Maite Oronoz, Koldo Gojenola, Alicia Pérez, Arantza Díaz de Ilarraza, Arantza Casillas. J Biomed Inform 2015
26
11

node2vec: Scalable Feature Learning for Networks.
Aditya Grover, Jure Leskovec. KDD 2016
463
3

The Human Phenotype Ontology in 2017.
Sebastian Köhler, Nicole A Vasilevsky, Mark Engelstad, Erin Foster, Julie McMurry, Ségolène Aymé, Gareth Baynam, Susan M Bello, Cornelius F Boerkoel, Kym M Boycott,[...]. Nucleic Acids Res 2017
440
3


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.